traf2b (traf2,LOC107697985)


Basic Information

Item Value
gene id traf2b
gene name traf2,LOC107697985
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 5023375 ~ 5052985 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921650.2
GACTCTGTGTGTCTCACCTCCGCAAAACGCCCATCGCGCTGAGCAGGCTCGCTGTAACACTGAACACATCCTCACTCGGATAAAGTGTGTCGCACTGAAGGTTGTCTGCAGAActggATGATCAGCATCGAGGGTAAATGGAAGGGAATGGCGCGTCCATCTTTGCCCTCCTCGATGGACTCCACTTTACCAGGAATATCTCGGCAGGTCTTGTCCGTGTCCATGGAACCTAAATATCAGTGCCAGAAGTGCAAAGAGGTTCTGAGGAAGCCTTTCCAGGCACAGTGTGGACATCGCTTCTGTGTGTACTGTTTTAAACAACTCACCAGctctggccccatcccatgTGAAGCCTGCCGTGATGAGGGAATATTCGAAGAAGAGCACTCGATACTCAACTTTGCTGTGGCTTTTCCAGACAATGCGGCGCGAAGAGAAATCGATGGTTTGCCTGCAAAATGCCCGAACGAGGGCTGTACCTGGTCAGGAACTTTGAAAGATTATGAGGGGCAACACGAAGGCCGATGTGAATTTGAGCGTGTAAAGTGTGATGCGTGCCAAGTCTACATCCTTATTAGCGAGAAAGACCGCCacaatgagagagagtgtgaagcAAGAACTCTTAACTGCAAATACTGCAAAGTCTCCTTCAGCTTCAAAGATATTAAGGCGCATGATGAGATTTGCCAAAAATTTCCAATGCAGTGCAAAGACTGTGGCAAAAAGAAGATTCCCAGAGAAAAGtTTCAAGAGCATAGCAAATCATGTGCGAAATCCAAGTCGGCCTGCCAGTTTAGTGAAATCGGCTGCAGAGCCGTGGTGGACAACGGAAAACAGCAGGAGCACGAACAGAGCAACGTGATGGAGCACTTGCGTCTCATGCTGGGCGTGCTCTCGTCGGTGCGCATTCGCTCTGACGCAGCCGGAGAGTGGCAGGAGGACTCGGGTCTCGGCCTGTACCGCAGCCCCGAAGATGCCGCGCTTCCAGGCAGCCAGGCCGCCGCGGGAGGCCCCGGCATGCAGCAGAAGATGACCGCGCTGGAGAACATCGTGTGTGTGCTGAACAGAGAGGTGGAGCGCACAGCTCTCACCCTCGAAGCTCTCAGCCGCCAGCACCGGCTCGACCAGGAGAAGATCGAAAACTTATCTAACAAGGTGCGTCAGTTGGAGCGAACGTTAAACATGCGAGATCTACAGCTGGTCGAATCAGAGCAGAACTTACGAGAGCTGCAGTTTTGCACTTATGACGGAGTGTTCATTTGGAAAATTTCGGATTTCTCACGCCGCAGACAAGATGCGCTGGCTGGTCGAGCCCCCGCCATGTTCTCACCAGcgTTCTACTCCAGTAAGTACGGCTATAAGATGTGTTTGAGGCTGTACTTGAACGGCGATGGTTCGGGCAGAGGCACTCACCTCTCCCTGTTCTTCGTGGTGATGAGAGGGAAATACGACGCTCTGCTCAAGTGGCCCTTCAGCCAGAAGgtaACTCTGATGCTTTTGGACCAGAATAACCGGGAGCACATCATCGATGCTTTCAGACCTGACATCAGCTCCACGTCTTTCCAAAGACCCATCAGTGAGATGAACATCGCCAGCGGCTGCCCGCTCTTCTGCCCCCTGGCCAAGCTGGCAGGGAAGAGCTCCTATGTCAGAGAtgacacaatttttattaaagCGATTGTAGATCTCACTGggctttaaagtaaaaaaatctaTGGGTATAAAATTTAGAACCCATCAGAAGTTCATTTTGAGCTCTGGAAGTCTAGGATACAACCCTGATTATAGTCCATCTATAATAATCAAGTACTGCTTTAAGGCTCTTTCTTCCAACTTATGTTATATATCTAGGTTCTCTAGTCTATCTAAAGCACAACACAGATCTGATAATTATATATCAGAAAATTATATCAGATCAGTCTGTGAAAGGCTGATTTGATGTAATTggtcatatttatataatttttttatatatacacactatattaaGCATACGTGCTGGTATATAGTTTAAAATAAGTTAATACAGCTAGCTATATTGCTACTAATATAAGTATACAACTATGTATATGATATCtaattatgtataataatatattatcaAGTGTAGTgcaagacaacaaaaaaaaaaattgcactgtAGAAAAATGACCATGTAACTACAGGGTGTCTGttaagtcaggaaccaatgagagtaaaactacatgtaattcagttttttttttttttttttccagtagttattatttacaacatatgcttTACATTTTCAGTCACTATACCATGTTTTTACAGGTTTGGCTCAACATATTCTCATTGGTTCCtcacttttcagacaccctctatacatatacaaa
>XM_026921651.2
gcagcagtgtgtctgAACGCGTCGACTCGAGGACGCTGCTGCGTTTTTCAGCTTTTTCTCGAACAGCTCGCACGCGCTCGGCCTCGCgcgcctgcctgcctgcctgcctctGCAAGATGATCAGCATCGAGGGTAAATGGAAGGGAATGGCGCGTCCATCTTTGCCCTCCTCGATGGACTCCACTTTACCAGGAATATCTCGGCAGGTCTTGTCCGTGTCCATGGAACCTAAATATCAGTGCCAGAAGTGCAAAGAGGTTCTGAGGAAGCCTTTCCAGGCACAGTGTGGACATCGCTTCTGTGTGTACTGTTTTAAACAACTCACCAGctctggccccatcccatgTGAAGCCTGCCGTGATGAGGGAATATTCGAAGAAGAGCACTCGATACTCAACTTTGCTGTGGCTTTTCCAGACAATGCGGCGCGAAGAGAAATCGATGGTTTGCCTGCAAAATGCCCGAACGAGGGCTGTACCTGGTCAGGAACTTTGAAAGATTATGAGGGGCAACACGAAGGCCGATGTGAATTTGAGCGTGTAAAGTGTGATGCGTGCCAAGTCTACATCCTTATTAGCGAGAAAGACCGCCacaatgagagagagtgtgaagcAAGAACTCTTAACTGCAAATACTGCAAAGTCTCCTTCAGCTTCAAAGATATTAAGGCGCATGATGAGATTTGCCAAAAATTTCCAATGCAGTGCAAAGACTGTGGCAAAAAGAAGATTCCCAGAGAAAAGtTTCAAGAGCATAGCAAATCATGTGCGAAATCCAAGTCGGCCTGCCAGTTTAGTGAAATCGGCTGCAGAGCCGTGGTGGACAACGGAAAACAGCAGGAGCACGAACAGAGCAACGTGATGGAGCACTTGCGTCTCATGCTGGGCGTGCTCTCGTCGGTGCGCATTCGCTCTGACGCAGCCGGAGAGTGGCAGGAGGACTCGGGTCTCGGCCTGTACCGCAGCCCCGAAGATGCCGCGCTTCCAGGCAGCCAGGCCGCCGCGGGAGGCCCCGGCATGCAGCAGAAGATGACCGCGCTGGAGAACATCGTGTGTGTGCTGAACAGAGAGGTGGAGCGCACAGCTCTCACCCTCGAAGCTCTCAGCCGCCAGCACCGGCTCGACCAGGAGAAGATCGAAAACTTATCTAACAAGGTGCGTCAGTTGGAGCGAACGTTAAACATGCGAGATCTACAGCTGGTCGAATCAGAGCAGAACTTACGAGAGCTGCAGTTTTGCACTTATGACGGAGTGTTCATTTGGAAAATTTCGGATTTCTCACGCCGCAGACAAGATGCGCTGGCTGGTCGAGCCCCCGCCATGTTCTCACCAGcgTTCTACTCCAGTAAGTACGGCTATAAGATGTGTTTGAGGCTGTACTTGAACGGCGATGGTTCGGGCAGAGGCACTCACCTCTCCCTGTTCTTCGTGGTGATGAGAGGGAAATACGACGCTCTGCTCAAGTGGCCCTTCAGCCAGAAGgtaACTCTGATGCTTTTGGACCAGAATAACCGGGAGCACATCATCGATGCTTTCAGACCTGACATCAGCTCCACGTCTTTCCAAAGACCCATCAGTGAGATGAACATCGCCAGCGGCTGCCCGCTCTTCTGCCCCCTGGCCAAGCTGGCAGGGAAGAGCTCCTATGTCAGAGAtgacacaatttttattaaagCGATTGTAGATCTCACTGggctttaaagtaaaaaaatctaTGGGTATAAAATTTAGAACCCATCAGAAGTTCATTTTGAGCTCTGGAAGTCTAGGATACAACCCTGATTATAGTCCATCTATAATAATCAAGTACTGCTTTAAGGCTCTTTCTTCCAACTTATGTTATATATCTAGGTTCTCTAGTCTATCTAAAGCACAACACAGATCTGATAATTATATATCAGAAAATTATATCAGATCAGTCTGTGAAAGGCTGATTTGATGTAATTggtcatatttatataatttttttatatatacacactatattaaGCATACGTGCTGGTATATAGTTTAAAATAAGTTAATACAGCTAGCTATATTGCTACTAATATAAGTATACAACTATGTATATGATATCtaattatgtataataatatattatcaAGTGTAGTgcaagacaacaaaaaaaaaaattgcactgtAGAAAAATGACCATGTAACTACAGGGTGTCTGttaagtcaggaaccaatgagagtaaaactacatgtaattcagttttttttttttttttttccagtagttattatttacaacatatgcttTACATTTTCAGTCACTATACCATGTTTTTACAGGTTTGGCTCAACATATTCTCATTGGTTCCtcacttttcagacaccctctatacatatacaaa
>XM_026921652.2
CTCTGTGTGTCTCACCTCCGCAAAACGCCCATCGCGCTGAGCAGGCTCGCTGTAACACTGAACACATCCTCACTCGGATAAAGTGTGTCGCACTGAAGGTTGTCTGCAGAActggGTTCTCAAGGGAACTCGATGAGGGCATGTGTTTCCAGCAATAGCACCaccactgggaaaaaaaactattggGCATCTTTAAAGATGATCAGCATCGAGGGTAAATGGAAGGGAATGGCGCGTCCATCTTTGCCCTCCTCGATGGACTCCACTTTACCAGGAATATCTCGGCAGGTCTTGTCCGTGTCCATGGAACCTAAATATCAGTGCCAGAAGTGCAAAGAGGTTCTGAGGAAGCCTTTCCAGGCACAGTGTGGACATCGCTTCTGTGTGTACTGTTTTAAACAACTCACCAGctctggccccatcccatgTGAAGCCTGCCGTGATGAGGGAATATTCGAAGAAGAGCACTCGATACTCAACTTTGCTGTGGCTTTTCCAGACAATGCGGCGCGAAGAGAAATCGATGGTTTGCCTGCAAAATGCCCGAACGAGGGCTGTACCTGGTCAGGAACTTTGAAAGATTATGAGGGGCAACACGAAGGCCGATGTGAATTTGAGCGTGTAAAGTGTGATGCGTGCCAAGTCTACATCCTTATTAGCGAGAAAGACCGCCacaatgagagagagtgtgaagcAAGAACTCTTAACTGCAAATACTGCAAAGTCTCCTTCAGCTTCAAAGATATTAAGGCGCATGATGAGATTTGCCAAAAATTTCCAATGCAGTGCAAAGACTGTGGCAAAAAGAAGATTCCCAGAGAAAAGtTTCAAGAGCATAGCAAATCATGTGCGAAATCCAAGTCGGCCTGCCAGTTTAGTGAAATCGGCTGCAGAGCCGTGGTGGACAACGGAAAACAGCAGGAGCACGAACAGAGCAACGTGATGGAGCACTTGCGTCTCATGCTGGGCGTGCTCTCGTCGGTGCGCATTCGCTCTGACGCAGCCGGAGAGTGGCAGGAGGACTCGGGTCTCGGCCTGTACCGCAGCCCCGAAGATGCCGCGCTTCCAGGCAGCCAGGCCGCCGCGGGAGGCCCCGGCATGCAGCAGAAGATGACCGCGCTGGAGAACATCGTGTGTGTGCTGAACAGAGAGGTGGAGCGCACAGCTCTCACCCTCGAAGCTCTCAGCCGCCAGCACCGGCTCGACCAGGAGAAGATCGAAAACTTATCTAACAAGGTGCGTCAGTTGGAGCGAACGTTAAACATGCGAGATCTACAGCTGGTCGAATCAGAGCAGAACTTACGAGAGCTGCAGTTTTGCACTTATGACGGAGTGTTCATTTGGAAAATTTCGGATTTCTCACGCCGCAGACAAGATGCGCTGGCTGGTCGAGCCCCCGCCATGTTCTCACCAGcgTTCTACTCCAGTAAGTACGGCTATAAGATGTGTTTGAGGCTGTACTTGAACGGCGATGGTTCGGGCAGAGGCACTCACCTCTCCCTGTTCTTCGTGGTGATGAGAGGGAAATACGACGCTCTGCTCAAGTGGCCCTTCAGCCAGAAGgtaACTCTGATGCTTTTGGACCAGAATAACCGGGAGCACATCATCGATGCTTTCAGACCTGACATCAGCTCCACGTCTTTCCAAAGACCCATCAGTGAGATGAACATCGCCAGCGGCTGCCCGCTCTTCTGCCCCCTGGCCAAGCTGGCAGGGAAGAGCTCCTATGTCAGAGAtgacacaatttttattaaagCGATTGTAGATCTCACTGggctttaaagtaaaaaaatctaTGGGTATAAAATTTAGAACCCATCAGAAGTTCATTTTGAGCTCTGGAAGTCTAGGATACAACCCTGATTATAGTCCATCTATAATAATCAAGTACTGCTTTAAGGCTCTTTCTTCCAACTTATGTTATATATCTAGGTTCTCTAGTCTATCTAAAGCACAACACAGATCTGATAATTATATATCAGAAAATTATATCAGATCAGTCTGTGAAAGGCTGATTTGATGTAATTggtcatatttatataatttttttatatatacacactatattaaGCATACGTGCTGGTATATAGTTTAAAATAAGTTAATACAGCTAGCTATATTGCTACTAATATAAGTATACAACTATGTATATGATATCtaattatgtataataatatattatcaAGTGTAGTgcaagacaacaaaaaaaaaaattgcactgtAGAAAAATGACCATGTAACTACAGGGTGTCTGttaagtcaggaaccaatgagagtaaaactacatgtaattcagttttttttttttttttttccagtagttattatttacaacatatgcttTACATTTTCAGTCACTATACCATGTTTTTACAGGTTTGGCTCAACATATTCTCATTGGTTCCtcacttttcagacaccctctatacatatacaaa
>XM_026921654.2
TGCAGCGTGCGCGACTGCCGTTCCGCAAAGCCCACGGCCCGAGAGACGTCACCAGTGTCTGCATACGACTGACACAGGCAAAACAAAAGGGTGTGGATTAAGATGATCAGCATCGAGGGTAAATGGAAGGGAATGGCGCGTCCATCTTTGCCCTCCTCGATGGACTCCACTTTACCAGGAATATCTCGGCAGGTCTTGTCCGTGTCCATGGAACCTAAATATCAGTGCCAGAAGTGCAAAGAGGTTCTGAGGAAGCCTTTCCAGGCACAGTGTGGACATCGCTTCTGTGTGTACTGTTTTAAACAACTCACCAGctctggccccatcccatgTGAAGCCTGCCGTGATGAGGGAATATTCGAAGAAGAGCACTCGATACTCAACTTTGCTGTGGCTTTTCCAGACAATGCGGCGCGAAGAGAAATCGATGGTTTGCCTGCAAAATGCCCGAACGAGGGCTGTACCTGGTCAGGAACTTTGAAAGATTATGAGGGGCAACACGAAGGCCGATGTGAATTTGAGCGTGTAAAGTGTGATGCGTGCCAAGTCTACATCCTTATTAGCGAGAAAGACCGCCacaatgagagagagtgtgaagcAAGAACTCTTAACTGCAAATACTGCAAAGTCTCCTTCAGCTTCAAAGATATTAAGGCGCATGATGAGATTTGCCAAAAATTTCCAATGCAGTGCAAAGACTGTGGCAAAAAGAAGATTCCCAGAGAAAAGtTTCAAGAGCATAGCAAATCATGTGCGAAATCCAAGTCGGCCTGCCAGTTTAGTGAAATCGGCTGCAGAGCCGTGGTGGACAACGGAAAACAGCAGGAGCACGAACAGAGCAACGTGATGGAGCACTTGCGTCTCATGCTGGGCGTGCTCTCGTCGGTGCGCATTCGCTCTGACGCAGCCGGAGAGTGGCAGGAGGACTCGGGTCTCGGCCTGTACCGCAGCCCCGAAGATGCCGCGCTTCCAGGCAGCCAGGCCGCCGCGGGAGGCCCCGGCATGCAGCAGAAGATGACCGCGCTGGAGAACATCGTGTGTGTGCTGAACAGAGAGGTGGAGCGCACAGCTCTCACCCTCGAAGCTCTCAGCCGCCAGCACCGGCTCGACCAGGAGAAGATCGAAAACTTATCTAACAAGGTGCGTCAGTTGGAGCGAACGTTAAACATGCGAGATCTACAGCTGGTCGAATCAGAGCAGAACTTACGAGAGCTGCAGTTTTGCACTTATGACGGAGTGTTCATTTGGAAAATTTCGGATTTCTCACGCCGCAGACAAGATGCGCTGGCTGGTCGAGCCCCCGCCATGTTCTCACCAGcgTTCTACTCCAGTAAGTACGGCTATAAGATGTGTTTGAGGCTGTACTTGAACGGCGATGGTTCGGGCAGAGGCACTCACCTCTCCCTGTTCTTCGTGGTGATGAGAGGGAAATACGACGCTCTGCTCAAGTGGCCCTTCAGCCAGAAGgtaACTCTGATGCTTTTGGACCAGAATAACCGGGAGCACATCATCGATGCTTTCAGACCTGACATCAGCTCCACGTCTTTCCAAAGACCCATCAGTGAGATGAACATCGCCAGCGGCTGCCCGCTCTTCTGCCCCCTGGCCAAGCTGGCAGGGAAGAGCTCCTATGTCAGAGAtgacacaatttttattaaagCGATTGTAGATCTCACTGggctttaaagtaaaaaaatctaTGGGTATAAAATTTAGAACCCATCAGAAGTTCATTTTGAGCTCTGGAAGTCTAGGATACAACCCTGATTATAGTCCATCTATAATAATCAAGTACTGCTTTAAGGCTCTTTCTTCCAACTTATGTTATATATCTAGGTTCTCTAGTCTATCTAAAGCACAACACAGATCTGATAATTATATATCAGAAAATTATATCAGATCAGTCTGTGAAAGGCTGATTTGATGTAATTggtcatatttatataatttttttatatatacacactatattaaGCATACGTGCTGGTATATAGTTTAAAATAAGTTAATACAGCTAGCTATATTGCTACTAATATAAGTATACAACTATGTATATGATATCtaattatgtataataatatattatcaAGTGTAGTgcaagacaacaaaaaaaaaaattgcactgtAGAAAAATGACCATGTAACTACAGGGTGTCTGttaagtcaggaaccaatgagagtaaaactacatgtaattcagttttttttttttttttttccagtagttattatttacaacatatgcttTACATTTTCAGTCACTATACCATGTTTTTACAGGTTTGGCTCAACATATTCTCATTGGTTCCtcacttttcagacaccctctatacatatacaaa

Function

symbol description
traf2 Enables several functions, including enzyme binding activity; tumor necrosis factor binding activity; and tumor necrosis factor receptor binding activity. Involved in several processes, including positive regulation of NF-kappaB transcription factor activity; positive regulation of macromolecule metabolic process; and protein ubiquitination. Located in cytosol. Part of several cellular components, including IRE1-TRAF2-ASK1 complex; TRAF2-GSTP1 complex; and tumor necrosis factor receptor superfamily complex.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0007250 activation of NF-kappaB-inducing kinase activity biological_process
GO:0046328 regulation of JNK cascade biological_process
GO:0033209 tumor necrosis factor-mediated signaling pathway biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03173 TRAF2; TNF receptor-associated factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921650.2 False 2357 mRNA 0.46 11 5023375 5043200
XM_026921651.2 False 2356 mRNA 0.46 11 5023375 5043022
XM_026921652.2 True 2438 mRNA 0.46 12 5023375 5043198
XM_026921654.2 False 2342 mRNA 0.46 11 5023375 5052985

Neighbor

gene id symbol gene type direction distance location
tmem203 tmem203,LOC106566747,LOC107730349 coding downstream 27809 4992259 ~ 4995566 (-)
tprn tprn coding downstream 33392 4964675 ~ 4989983 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107595991,LOC107746468 coding downstream 66552 4945515 ~ 4956823 (-)
LOC113531491 npr2,LOC108260050,LOC107730344,LOC107684353,LOC107746469,LOC107559735,LOC107595992,LOC107683705 coding downstream 80368 4897112 ~ 4943007 (-)
pmchl LOC108259803 coding downstream 153879 4868956 ~ 4869496 (-)
bspry bspry coding upstream 5241 5058226 ~ 5069561 (-)
pax8 pax8,LOC106566842,LOC106563295 coding upstream 112230 5165215 ~ 5179221 (-)
lman2la lman2l,LOC102299173,LOC102779830,LOC107095700 coding upstream 166911 5219896 ~ 5226689 (-)
ddx54 ddx54,LOC107729212,LOC107674901,LOC102784149,LOC107597958,LOC107566861 coding upstream 542933 5595918 ~ 5606473 (-)
abl1 abl1,LOC107597931,LOC107674916 coding upstream 582315 5635300 ~ 5668547 (-)
G381229 ccnb1,LOC107683704,LOC107738921 non-coding downstream 167771 4851504 ~ 4855604 (-)
G381039 NA non-coding downstream 547986 4474722 ~ 4475389 (-)
G381017 NA non-coding downstream 612703 4410084 ~ 4410672 (-)
G380978 NA non-coding downstream 662853 4359528 ~ 4360522 (-)
G380943 NA non-coding downstream 716667 4301092 ~ 4306708 (-)
G381342 NA non-coding upstream 1886 5054871 ~ 5055341 (-)
G381343 NA non-coding upstream 4523 5057508 ~ 5057722 (-)
G381352 NA non-coding upstream 26787 5079772 ~ 5081374 (-)
G381353 NA non-coding upstream 30554 5083539 ~ 5083789 (-)
G381355 NA non-coding upstream 41419 5094404 ~ 5094619 (-)
cdc26 cdc26,LOC107691734,LOC107603191,LOC107743800 other downstream 714363 4307458 ~ 4309012 (-)
G380922 LOC108259978 other downstream 830463 4184874 ~ 4192912 (-)
G380833 mob3b,LOC108414757,LOC107721040,LOC107684196,LOC107558072,LOC106572798 other downstream 955758 4067030 ~ 4067617 (-)
hook3 hook3 other downstream 1065601 3885884 ~ 3957774 (-)
LOC113531053 c28h9orf69,cunh9orf69,c5h9orf69,lg14h9orf69,LOC106563262 other downstream 3401583 1617698 ~ 1621792 (-)
LOC113531542 znf596 other upstream 68683 5121668 ~ 5132127 (-)
G382036 NA other upstream 1051546 6104531 ~ 6107994 (-)
LOC113531448 lrrc75a,LOC108430414 other upstream 1095295 6148280 ~ 6173767 (-)
LOC113531562 LOC108260327 other upstream 1171459 6224444 ~ 6237605 (-)
LOC113531045 NA other upstream 1207631 6260616 ~ 6262466 (-)

Expression


Co-expression Network