anapc2 (anapc2,LOC107559737,LOC107730340,LOC107595991,LOC107746468)


Basic Information

Item Value
gene id anapc2
gene name anapc2,LOC107559737,LOC107730340,LOC107595991,LOC107746468
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 4945515 ~ 4956823 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921690.2
AAACGGCGCTGTTTGgaaactgcttttaaaaaaatgcgtTTTGGAGAAACTGTGTTGGTCCGAAAATGAACGACAGCTCGTCGGTTTTACTGCCGCAGGGGCTTCCGGCAGCTTGGGACACTGTGACTGCTGCACTGGTATCTCCATCCACACCCCCTCCAGTTACTGATGAGTCTGTTTCTGAGGCTCTGACACTGCTGTGTAAGAAAGGATTGGTTCAGTATGTGGAAGGTTGGCTGCTGGAGACACTGCAGGTTTCTTTGGCGTCCAACGTGGCTCCGGAGTTCTGGGCCGGACTTCAGCAGCCGGAGGGGGAATcacaagagagagacagagccaGAGCACTTCTGGAAGCCTTTAGGACCCTGCTGCAGCGACTCCAACCTTTTCTCTGTGGTCTTGAGCGACTCGGTTCGTGGCAGGACGAAGGTCGAGCAGGTCTGCTTGGACCCGGAGCCCATGGCCTGCGAGAGAGGGCCTTCTCTATCATCCGTGCCATTCTCCTGTTTTCTCCACCTCCAGTGCTACAACAGCGTGTCCTAGAGTTCTACAGCCGCACTTTCTCCGTGTACATGAGCCAGCTGGGAGAGCAAATCGAGCCTGATGACGTGGCAGCAGAGAGCGATGGGAATGATGTGTGCACGGGTTGCGCCGCTGCGCCACAGGTCTGCTGGTGCCAAGACGCTCTGGAGCAGCTGCAAGAGTTTAGTCACATCCTCTCCAGACTGCAGCTGTTGGAAAGAGTGAGCTCTGAGGCAGTGACCAACATTTTGCACCGCTTGATCGAGCAGAGGATGGAGCAGCGCTGCAGAGGCGAATATGAAAGATCCTTCCTTTCAGACTTCAATGATtggttAGAGCAGGTCCTTGGTTGGCTCAGTAGGGTCTTTGCGAGCGAGGTAGGCGAGGCCAGCTCCAGCTCTTTACCAACAGACGGAAAGCTAGATTACGTTGGCAGTACCATCCTCCAGCGCTGGCGCTGTCATATGCAGCAGTTCTTCTGCCGCATCTACGTCAACATGAGGATTGAGGAGCTTTTCAGCATCATTcgagATTTCCCAGAGTCCACCCCTGCTGTTGAAGACCTGAAGTTCTGTCTGGAGCGGACCAATCAAAGACAGCAACTCCTTACTTCTCTCAAATCTGCTTTTGAGACACGTCTGTTGCACCCAGGAGTTCACACATCTGACATAATAACCGTCTACATCTCAGCCATTAAAGCTTTACGGGAACTCGACCCCTCCATGGTCATCCTTCAGGTGGCCTGCCAACCCATTCGCAAATACCTGAGAACACGTGAAGACACGGTGCGTCAGATTGTCGCGAGTCTAACTGGCGACACTGAGGGCTGTAGTGAGTTAGCCAGTGAGCTCTCTCGGGCCGACCCTGTTACCCTGGAAACACAGGATAGTGAGGATGAGGGAAGCGATCCAGAGGAGTGGACCCCTGACCCTACTGATGCCCTAACAGATAAGACCGGCTCTAAGCGGCGCTCCTCAGACATCATCAGTCTTCTGGTGAGCATCTTTGGCAGTAAGGAGATCTTCATTGATGAGTACAAAACTGTGCTGGCAGACAGGCTGCTGCACCAGCTCAACTACAACACGGCCAGggagatTCGGAATGTGGAGTTGCTGAAGCTGAGATTTGGAGAGTCCCACATGCACTACTGTGAGGTCATGCTGAAGgatGTGGCTGATTCCCGGCGGattaacactaacattcatGAAGAGGAGGCTCGTCTGCCTGAGGAAGAGCAGCCTCCTGTTCCTCTGTCGGCCATGATCCTGTCCTCAGAGTTCTGGCCTCAGCTCAAAGAGGAGAAGTTGGAACTGCCTGCTGCTGTCTCCAAATCCATGGAGACCTACACACACCGCTTTGAAAAGCTCAaggctatGAGGACTCTGAGCTGGAAGCCTCACCTGGGATCAGTAACACTGGATGTGGAGCTGGAGGACCGCACTCTTACCAACCTCTCCGTGTCTCCCATCCACGCTGCCATCATCCTGCACTTCCAGGACAAGGGCACATGGGCCCTGGAGGAGCTGAGTGGAGTTCTGGGTGTGCCCCAGGAGCTCTTGCGCAGAAAGCTAGCGCTGTGGCAGCAGCATGGCGTGCTCCAGGAGGAGTCACCGGGCCGATACAGCGTCCTCGAGAAGGCCTCCAGCCGCGAACGGCCTGACCGAGGCATCATGCTCATAGACAGCGACGAGGAGGGAGACTCCAACACCACCACGCAGTCAGAGCAGAGGGAGGAGAAGCTGCAGTTGTTCTGGGCCTACATTCAGGCCATGCTGACCAATCTGGAGAGCATGACCCTGGAGAGGATTCACTCCATGCTGCGCATGTTTGTGGCTACAGGGCCCAGTGTCACCGAGATGGATGTCAACGAGCTGCAGGCTTTCCTGCAGAAAAAAGTGCGAGATCACCAGCTGATCGTCTCAGCCGGCGTGTACAGATTGCCCAAAACTACTCAGtagagatggacagacaaagTTCTTCTGGTTGGATCGTTtttcacaaataataaaatgctgaatTGTTTATCA

Function

symbol description
anapc2 Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within cell division and ubiquitin-dependent protein catabolic process. Predicted to be part of anaphase-promoting complex. Orthologous to human ANAPC2 (anaphase promoting complex subunit 2).

NR:

description
anaphase-promoting complex subunit 2-like

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K03349 APC2, ANAPC2; anaphase-promoting complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921690.2 True 2549 mRNA 0.54 14 4945515 4956823

Neighbor

gene id symbol gene type direction distance location
LOC113531491 npr2,LOC108260050,LOC107730344,LOC107684353,LOC107746469,LOC107559735,LOC107595992,LOC107683705 coding downstream 2508 4897112 ~ 4943007 (-)
pmchl LOC108259803 coding downstream 76019 4868956 ~ 4869496 (-)
srek1 srek1,LOC107681054 coding downstream 106076 4828667 ~ 4839439 (-)
mast4 mast4 coding downstream 141433 4713404 ~ 4804082 (-)
pik3r1 pik3r1,LOC107738919,LOC107681053,LOC107600587,LOC107684350,LOC107595995,LOC107730332 coding downstream 289040 4631885 ~ 4656475 (-)
tprn tprn coding upstream 7852 4964675 ~ 4989983 (-)
tmem203 tmem203,LOC106566747,LOC107730349 coding upstream 35436 4992259 ~ 4995566 (-)
traf2b traf2,LOC107697985 coding upstream 66552 5023375 ~ 5052985 (-)
bspry bspry coding upstream 101403 5058226 ~ 5069561 (-)
pax8 pax8,LOC106566842,LOC106563295 coding upstream 208392 5165215 ~ 5179221 (-)
G381229 ccnb1,LOC107683704,LOC107738921 non-coding downstream 89911 4851504 ~ 4855604 (-)
G381039 NA non-coding downstream 470126 4474722 ~ 4475389 (-)
G381017 NA non-coding downstream 534843 4410084 ~ 4410672 (-)
G380978 NA non-coding downstream 584993 4359528 ~ 4360522 (-)
G380943 NA non-coding downstream 638807 4301092 ~ 4306708 (-)
G381342 NA non-coding upstream 98048 5054871 ~ 5055341 (-)
G381343 NA non-coding upstream 100685 5057508 ~ 5057722 (-)
G381352 NA non-coding upstream 122949 5079772 ~ 5081374 (-)
G381353 NA non-coding upstream 126716 5083539 ~ 5083789 (-)
G381355 NA non-coding upstream 137581 5094404 ~ 5094619 (-)
cdc26 cdc26,LOC107691734,LOC107603191,LOC107743800 other downstream 636503 4307458 ~ 4309012 (-)
G380922 LOC108259978 other downstream 752603 4184874 ~ 4192912 (-)
G380833 mob3b,LOC108414757,LOC107721040,LOC107684196,LOC107558072,LOC106572798 other downstream 877898 4067030 ~ 4067617 (-)
hook3 hook3 other downstream 987741 3885884 ~ 3957774 (-)
LOC113531053 c28h9orf69,cunh9orf69,c5h9orf69,lg14h9orf69,LOC106563262 other downstream 3323723 1617698 ~ 1621792 (-)
LOC113531542 znf596 other upstream 164845 5121668 ~ 5132127 (-)
G382036 NA other upstream 1147708 6104531 ~ 6107994 (-)
LOC113531448 lrrc75a,LOC108430414 other upstream 1191457 6148280 ~ 6173767 (-)
LOC113531562 LOC108260327 other upstream 1267621 6224444 ~ 6237605 (-)
LOC113531045 NA other upstream 1303793 6260616 ~ 6262466 (-)

Expression


Co-expression Network