G381353


Basic Information

Item Value
gene id G381353
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 5083539 ~ 5083789 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU452156
GCAGCCTCAACTGAACCTGACTCCCGAAATTCATTCATAATATCAACATTAAATTATAGCTAGATGTTTGAGTAAAAACACtggtgttagggttaaagcagTTCTGACAGTGTTTCCTGTGCAAAAACCGTCCCAAAGCTTTGCCATGGAGACTGAAGGCATGCTAAAGGTTCTTCATGCCATCCTGTAGACTATAGACACACAGGCCATTACTGTCCACGACTCCTGGGTCTGTTATAGCTACATGTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU452156 True 251 lncRNA 0.42 1 5083539 5083789

Neighbor

gene id symbol gene type direction distance location
bspry bspry coding downstream 13978 5058226 ~ 5069561 (-)
traf2b traf2,LOC107697985 coding downstream 30554 5023375 ~ 5052985 (-)
tmem203 tmem203,LOC106566747,LOC107730349 coding downstream 87973 4992259 ~ 4995566 (-)
tprn tprn coding downstream 93556 4964675 ~ 4989983 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107595991,LOC107746468 coding downstream 126716 4945515 ~ 4956823 (-)
pax8 pax8,LOC106566842,LOC106563295 coding upstream 81426 5165215 ~ 5179221 (-)
lman2la lman2l,LOC102299173,LOC102779830,LOC107095700 coding upstream 136107 5219896 ~ 5226689 (-)
ddx54 ddx54,LOC107729212,LOC107674901,LOC102784149,LOC107597958,LOC107566861 coding upstream 512129 5595918 ~ 5606473 (-)
abl1 abl1,LOC107597931,LOC107674916 coding upstream 551511 5635300 ~ 5668547 (-)
exosc2 exosc2,exos2 coding upstream 587631 5671420 ~ 5677414 (-)
G381352 NA non-coding downstream 2165 5079772 ~ 5081374 (-)
G381343 NA non-coding downstream 25817 5057508 ~ 5057722 (-)
G381342 NA non-coding downstream 28198 5054871 ~ 5055341 (-)
G381229 ccnb1,LOC107683704,LOC107738921 non-coding downstream 227935 4851504 ~ 4855604 (-)
G381039 NA non-coding downstream 608150 4474722 ~ 4475389 (-)
G381355 NA non-coding upstream 10615 5094404 ~ 5094619 (-)
G381366 NA non-coding upstream 31640 5115429 ~ 5116989 (-)
G381463 NA non-coding upstream 145089 5228878 ~ 5234240 (-)
G381493 NA non-coding upstream 264266 5348055 ~ 5348267 (-)
G381543 NA non-coding upstream 416298 5500087 ~ 5500313 (-)
cdc26 cdc26,LOC107691734,LOC107603191,LOC107743800 other downstream 774527 4307458 ~ 4309012 (-)
G380922 LOC108259978 other downstream 890627 4184874 ~ 4192912 (-)
G380833 mob3b,LOC108414757,LOC107721040,LOC107684196,LOC107558072,LOC106572798 other downstream 1015922 4067030 ~ 4067617 (-)
hook3 hook3 other downstream 1125765 3885884 ~ 3957774 (-)
LOC113531053 c28h9orf69,cunh9orf69,c5h9orf69,lg14h9orf69,LOC106563262 other downstream 3461747 1617698 ~ 1621792 (-)
LOC113531542 znf596 other upstream 37879 5121668 ~ 5132127 (-)
G382036 NA other upstream 1020742 6104531 ~ 6107994 (-)
LOC113531448 lrrc75a,LOC108430414 other upstream 1064491 6148280 ~ 6173767 (-)
LOC113531562 LOC108260327 other upstream 1140655 6224444 ~ 6237605 (-)
LOC113531045 NA other upstream 1176827 6260616 ~ 6262466 (-)

Expression


Co-expression Network