exosc2 (exosc2,exos2)


Basic Information

Item Value
gene id exosc2
gene name exosc2,exos2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 5671420 ~ 5677414 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921664.2
CCAGCACATAGATGGCGGTATTTGTGCTAAGGAACTCTCACTCGGCCATTTTAGTGTAAACTCACATGGTTCAGGCATGGCGGTAGATATGAGATTGCCTGCGAGGAAACAAGCGTCTCTGCCAGCTTCTCTTTCTAGCTCGGACGGTAAACACTTGGTGGTTCCGGGGGATGTGATCACATCAGACACAGGCTTTATGAGaGGCCATGGAACGTACATGGATGATGAAAAACTCACTGCTTCGGTGGCTGGTGAGGTGGAACGAGTCAACAAACTCATCTGTGTGAGGCCACTGAAGACGAGgttcaATGGTGAAGTCGGTGATGTGGTTGTTGGTCGGATCACTGAGGTTCAACAGAAACGCTGGAAAGTGGAGACGAACTCGCGGCTGGACTCTGTATTGCTTCTGTCTTCGGTTAATCTTCCTGGAGGAGAGTTGAGGAGGCGTTCGGCAGAAGATGAACTTGCCATGAGAGACTATCTTCAAGAAGGGGACCTCATTAGTGCAGAGGTACAGTCTGTGTTTTCAGATGGAGccctctctctccacacacgcAGCTTAAAGTACGGCAAGCTGGGTCAGGGTGTGGTCGTGCAAGTATCGCCCTCGCTCATCAAGAGACAGAAAACCCATTTCCACAATCTGACATGTGGAGCGTCCGTAATACTAGGGAACAACGGCTATATTTGGATTTACCCCACACCGGGGCAACAAGATGAAGAGGCAGGAGGATATTACACAAGCCTAGAGCCCGTCCCTCTCTCAGACCGGGAAGTCATTTCTAGACTGAGAAACTGTTTACTGGCTCTGGCAGCCCACAAAGTGATGCTGTACGACACCAGCATACTCTACTGCTATGAATCCTCTCTGACACACCAGATCAAAGACATCTTGAAACCAGAGATCATGGACGAAATTGTGATGGAGACACGGCAACGACTTCTTGACCAGGAGGGTTAGAATGCTCGCAGTCAGCAACACGCATATGAGAACGATTTCTCACAAAAGGATTCACACCAGTGTTAAGAACAAGACTTGCCTTTTCATCtttctgattaaaaacaaaaagactcaGGGACAACATAAAGTCACCAGTAACACTCTGATGCTATTCCTGGTTATAATTATTCTGTGTCACATCTCTGAGATTCTTTCTGAAATACAGATCACAGTCTActgagtgtcccaaaagtctccatacataggggcaGGGGTAGCTCAGTGAGTAAGACAGATCGGactgatcggaaggtcgtgATttgaaatcccagcactgccactgctagacccttgagcaagacccttaaccctcaactgcccAGTTCCTCAAGTCGTTGTGGACTTCTcccaaatgccataaaatatcagtgtaaataggggaaattaacactttttctCAAAAcatcttccaaaatttttcatattttcattagtttatattattattatttttttcagatagcctttaagaatgcctttgacaaaagaaggtTGTGGTGCGCCAGGAAAAGATACAGCACAAAGATCATTTAAAGAAACGCATTCGAAGTGcagttacatgcataacaccagatgtgttaaaacGAGATCATCgtgagtgggagagacgactccgtttgtgtttacaaagaaatggctgtttgtaaataaagttacattttgctaaaaagtggtaATTTTCCTGTTTgtatagagacttttgggacaccatgTACAGATTTTGACTAATatcgccaaaaaaaaaacatgcttaaaGGAAAGCTCCAGAATTT

Function

symbol description
exosc2 Predicted to enable RNA binding activity. Predicted to be involved in RNA metabolic process. Predicted to act upstream of or within rRNA processing. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Is expressed in immature eye; midbrain hindbrain boundary; and optic tectum. Orthologous to human EXOSC2 (exosome component 2).

NR:

description
PREDICTED: exosome complex component RRP4

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0000178 exosome (RNase complex) cellular_component
GO:0004527 exonuclease activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03679 RRP4, EXOSC2; exosome complex component RRP4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921664.2 True 1773 mRNA 0.45 9 5671420 5677414

Neighbor

gene id symbol gene type direction distance location
abl1 abl1,LOC107597931,LOC107674916 coding downstream 2873 5635300 ~ 5668547 (-)
ddx54 ddx54,LOC107729212,LOC107674901,LOC102784149,LOC107597958,LOC107566861 coding downstream 64947 5595918 ~ 5606473 (-)
lman2la lman2l,LOC102299173,LOC102779830,LOC107095700 coding downstream 444731 5219896 ~ 5226689 (-)
pax8 pax8,LOC106566842,LOC106563295 coding downstream 492199 5165215 ~ 5179221 (-)
bspry bspry coding downstream 601859 5058226 ~ 5069561 (-)
oxt LOC108260424 coding upstream 29716 5707130 ~ 5709601 (-)
LOC113531443 edf1,LOC108260092,LOC102798323 coding upstream 46010 5723424 ~ 5729111 (-)
zgc:171967 LOC108260090,LOC108427707,LOC107702959 coding upstream 53105 5730519 ~ 5745039 (-)
zfpl1 zfpl1 coding upstream 73106 5750520 ~ 5756110 (-)
kat5b kat5,kat5b,LOC108427799,LOC108427738 coding upstream 281734 5959148 ~ 5969820 (-)
LOC117596288 NA non-coding downstream 85452 5579724 ~ 5585968 (-)
G381543 NA non-coding downstream 171107 5500087 ~ 5500313 (-)
G381493 NA non-coding downstream 323153 5348055 ~ 5348267 (-)
G381463 NA non-coding downstream 437180 5228878 ~ 5234240 (-)
G381366 NA non-coding downstream 554431 5115429 ~ 5116989 (-)
G381685 smyd1 non-coding upstream 14883 5692297 ~ 5695115 (-)
G381676 NA non-coding upstream 72097 5749511 ~ 5801494 (-)
G381806 NA non-coding upstream 212374 5889788 ~ 5890410 (-)
G381817 LOC108259745,LOC108427774,LOC107695997,LOC107741023 non-coding upstream 228810 5906224 ~ 5908422 (-)
G381987 NA non-coding upstream 434132 6111546 ~ 6115317 (-)
LOC113531542 znf596 other downstream 539293 5121668 ~ 5132127 (-)
cdc26 cdc26,LOC107691734,LOC107603191,LOC107743800 other downstream 1362408 4307458 ~ 4309012 (-)
G380922 LOC108259978 other downstream 1478508 4184874 ~ 4192912 (-)
G380833 mob3b,LOC108414757,LOC107721040,LOC107684196,LOC107558072,LOC106572798 other downstream 1603803 4067030 ~ 4067617 (-)
hook3 hook3 other downstream 1713646 3885884 ~ 3957774 (-)
G382036 NA other upstream 427117 6104531 ~ 6107994 (-)
LOC113531448 lrrc75a,LOC108430414 other upstream 470866 6148280 ~ 6173767 (-)
LOC113531562 LOC108260327 other upstream 547030 6224444 ~ 6237605 (-)
LOC113531045 NA other upstream 583202 6260616 ~ 6262466 (-)
G382054 ubb,ubc,UBC,LOC107553588,LOC107567755,LOC104616321,LOC107658630 other upstream 641563 6318977 ~ 6383684 (-)

Expression


Co-expression Network