G381463


Basic Information

Item Value
gene id G381463
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 5228878 ~ 5234240 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU452289
tggacagcatttcttttgttttattacatattaaacatccttttttaaatgaaagcatCACCCCAgagttctttttaaaaaaatgtttgctaaaaaaataaaccctTCTAATTTTCAATGCCACATTTTATACTAATATATTTGATGCCCCATaacatgaaaacataaaaaaatcctttaaaaaaacacatgtaaacaaataaacactctttccCTTATGTTTCCACAGTAGTCATAGATGCATGTATATCCCAAATAAGATATGTGAATATTCAGGTAGATAGAAAGTAATAGTTCACCtatatagaataaaaaatattcactaTTTCTGTTTTTGGCATCACAGCCACCTCTATGCTGGGACGAACTACGGTTTCACATCTTTTTCATGTCTTTGCTAGAATTTAAAATCAgctaaaatgtacatatttgcAACTTATGGCTTGGTGTCTTTTGCATAGTGTGCTCTCAAACCTTCACAACTTTCTCAATTATGTTCTCCAACAACCATCTGGACGTTTCGATATAATGCACCGAGGTACAACTAAGTCAAATATTATGCACTGATTATGTCAGGTATAGCAACTTAacatacattttacagtaatgttttcGTTGGCTTTATCTAGGAATATATCAGACTAAAGATTAGCAAGGCAAATACAACTGTCTGAGGGAAAACTTTCAATATGAcactacaattaaaaaaaaaaaaagacatcaagtGACACTAAGGAACCGGGATCCTGTGCAAGAGACTATAGTTGTTCATATTGTGACATACACACAACAAATGTTGAAGCCAGCTACAGCCAGTAATACAGCTACACTCTtaatgaaccttttttttcttacaccataacaaattttttttagcattatcACACAACAACATTAATGTTGTGTTTCTTACAGTATATGAAACTCATAGGAGTGTAACGATACGCAAAATTCAAATTCGATACGATGTTATGGTGGTGTCTCGAAACATTTTCGATACAGCAGAAATAAGCATcacctgaataataataataataataataataataataataataataataataagtcttGTATGTTTGTTCAAGTGTTTGTTCAGACTCTtagcattatactgtatatatgctgtattttatgaaaaatatgaaaaatgatcTACATTATTATGCAGTCTAACAAATCATCATATCATATCGGATCGGATCGAGAGCCTCATATCACACTACAGGTACgctgtatcgttacacccctagaAACTTGATGAGGTTGTGCGTCTTGGTGAAACAatatgatggaaatgaaaaatcagtctttgctgctgctgtaatctgATGAGGCTTTACTTGGACGTGTGTACATCGGCTCCATGTCAGCTTCCTGGTCTTCATTCGTGCTTTTCCCCTCCACCGTAAACCTTCCTCAAGCTGGAATCCAGGAGGAAGTTTTACGGTGGAGTTGTACTTTAATTAACACCAATAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU452289 True 1480 lncRNA 0.33 2 5228878 5234240

Neighbor

gene id symbol gene type direction distance location
lman2la lman2l,LOC102299173,LOC102779830,LOC107095700 coding downstream 2189 5219896 ~ 5226689 (-)
pax8 pax8,LOC106566842,LOC106563295 coding downstream 49657 5165215 ~ 5179221 (-)
bspry bspry coding downstream 159317 5058226 ~ 5069561 (-)
traf2b traf2,LOC107697985 coding downstream 175893 5023375 ~ 5052985 (-)
tmem203 tmem203,LOC106566747,LOC107730349 coding downstream 233312 4992259 ~ 4995566 (-)
ddx54 ddx54,LOC107729212,LOC107674901,LOC102784149,LOC107597958,LOC107566861 coding upstream 361678 5595918 ~ 5606473 (-)
abl1 abl1,LOC107597931,LOC107674916 coding upstream 401060 5635300 ~ 5668547 (-)
exosc2 exosc2,exos2 coding upstream 437180 5671420 ~ 5677414 (-)
oxt LOC108260424 coding upstream 472890 5707130 ~ 5709601 (-)
LOC113531443 edf1,LOC108260092,LOC102798323 coding upstream 489184 5723424 ~ 5729111 (-)
G381366 NA non-coding downstream 111889 5115429 ~ 5116989 (-)
G381355 NA non-coding downstream 134259 5094404 ~ 5094619 (-)
G381353 NA non-coding downstream 145089 5083539 ~ 5083789 (-)
G381352 NA non-coding downstream 147504 5079772 ~ 5081374 (-)
G381343 NA non-coding downstream 171156 5057508 ~ 5057722 (-)
G381493 NA non-coding upstream 113815 5348055 ~ 5348267 (-)
G381543 NA non-coding upstream 265847 5500087 ~ 5500313 (-)
LOC117596288 NA non-coding upstream 345484 5579724 ~ 5585968 (-)
G381685 smyd1 non-coding upstream 458057 5692297 ~ 5695115 (-)
G381676 NA non-coding upstream 515271 5749511 ~ 5801494 (-)
LOC113531542 znf596 other downstream 96751 5121668 ~ 5132127 (-)
cdc26 cdc26,LOC107691734,LOC107603191,LOC107743800 other downstream 919866 4307458 ~ 4309012 (-)
G380922 LOC108259978 other downstream 1035966 4184874 ~ 4192912 (-)
G380833 mob3b,LOC108414757,LOC107721040,LOC107684196,LOC107558072,LOC106572798 other downstream 1161261 4067030 ~ 4067617 (-)
hook3 hook3 other downstream 1271104 3885884 ~ 3957774 (-)
G382036 NA other upstream 870291 6104531 ~ 6107994 (-)
LOC113531448 lrrc75a,LOC108430414 other upstream 914040 6148280 ~ 6173767 (-)
LOC113531562 LOC108260327 other upstream 990204 6224444 ~ 6237605 (-)
LOC113531045 NA other upstream 1026376 6260616 ~ 6262466 (-)
G382054 ubb,ubc,UBC,LOC107553588,LOC107567755,LOC104616321,LOC107658630 other upstream 1084737 6318977 ~ 6383684 (-)

Expression


Co-expression Network