G382514


Basic Information

Item Value
gene id G382514
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6933709 ~ 6934604 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU453526
AAACCTTAAAATCAAATTCTTAAATTtatagaaataattttattaatttattctttgtaatatttactaaattactaataatctttgtaatatttatgtattatggcTGGCAAATCTTACGTAACACAAAACGCCAGCCACTTCCTGTTAACTCGATGCagtaaattattacatttttatttttgtaccaTCAAAGTATGTTTCTCCATAATGTAAAAAGTTGTATACTTACATCTGTGTTGTAAGATCTTAGCGTATCctgtaaaaaaatgtttaaaggttCTAAATTGTACGTTGGTTTGCTAGTTAGTTTGCTAGAAACAGCTTACTCATTCCGACAAAGATGGCCGCCACGCTTGATTTAGCATAGCATGGAGTAAAAGAAAGACGTAACAGGTTACACTTGTAACCAATCTTTTAATTAGagaaaagttaaaataaaaaataagttttcAGTGTTTAACAAGATGCTGTTGGTTTCAGTTAGTGAATCTGTTCGTATGATGAAAAGTACTTTCTTTGAACTTTATGTGGAACTTTGTGAACAATTGAGTTTGGACTTTTTGTTGCTGTCCTAAATAGAGGTCTGAAAAATTCTGAGACAtgacaaacaaaaaatcagTCAAAACTGtctgcaaatatttttttgtcaaGAGTTCATATTAATTCAAGAGTAACTGTTTGGGTGTGGTTTACGCAGACAGCTgtaaatgagctggaagtgtgtgtgtgtgtatgtgtgtgagagggggaGGGGAGTCTTAACCACTAACTCTACAGGTGTGACTACAGGCAGATGAACTGAGGACCTGGAGACGGCCGCACTTGGGAAGTACAGTGCAGTCATCCATAAAGTAGAAAGCACTACTAAACCCCTCGCCACAGTGTAGTGTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU453526 True 896 lncRNA 0.34 1 6933709 6934604

Neighbor

gene id symbol gene type direction distance location
ywhag1 143g1,LOC108437655,LOC103041195,LOC101160255 coding downstream 125447 6795319 ~ 6808262 (-)
rpain rpain coding downstream 267589 6662905 ~ 6666120 (-)
znhit3 znhit3 coding downstream 275720 6654064 ~ 6657989 (-)
pigw pigw coding downstream 301041 6628748 ~ 6632668 (-)
ggnbp2 ggnbp2 coding downstream 308058 6611840 ~ 6625651 (-)
supt4h1 supt4h1,LOC107654296,LOC107563417 coding upstream 15670 6950274 ~ 6954912 (-)
hpda LOC108260398,LOC108413266,LOC105896091 coding upstream 125458 7060062 ~ 7070740 (-)
vkorc1l1 vkorc1l1,LOC107719344 coding upstream 310044 7244648 ~ 7256667 (-)
dhx33 dhx33 coding upstream 331281 7265885 ~ 7274856 (-)
LOC113531276 LOC108260270 coding upstream 449904 7384508 ~ 7408506 (-)
G382515 NA non-coding downstream 580 6930168 ~ 6933129 (-)
G382202 LOC108260093 non-coding downstream 388849 6544276 ~ 6544860 (-)
G382200 NA non-coding downstream 390865 6542567 ~ 6542844 (-)
G382199 NA non-coding downstream 392164 6541342 ~ 6541545 (-)
LOC113531571 NA non-coding downstream 398275 6534109 ~ 6535434 (-)
G382550 NA non-coding upstream 1783 6936387 ~ 6936616 (-)
G382715 NA non-coding upstream 167972 7102576 ~ 7179908 (-)
G382855 NA non-coding upstream 511189 7445793 ~ 7446511 (-)
G382880 NA non-coding upstream 587292 7521896 ~ 7527576 (-)
G382879 NA non-coding upstream 597687 7532291 ~ 7536966 (-)
LOC113531451 LOC108260064 other downstream 109265 6809425 ~ 6824444 (-)
emc6 emc6 other downstream 525871 6321762 ~ 6407838 (-)
G382054 ubb,ubc,UBC,LOC107553588,LOC107567755,LOC104616321,LOC107658630 other downstream 550025 6318977 ~ 6383684 (-)
LOC113531045 NA other downstream 671243 6260616 ~ 6262466 (-)
LOC113531562 LOC108260327 other downstream 696104 6224444 ~ 6237605 (-)
G382719 cit other upstream 341067 7275671 ~ 7359971 (-)
si:dkey-220k22.3 NA other upstream 714689 7649293 ~ 7656124 (-)
camkk1a camkk1,LOC107664416,LOC107587369,LOC107664519 other upstream 865034 7799638 ~ 7895729 (-)
atp2a3 atp2a3,LOC107587360,LOC107597397,LOC107712375,LOC107664518,LOC107748501 other upstream 954456 7889060 ~ 7986733 (-)
pdzd3b LOC108260234 other upstream 1403904 8338508 ~ 8348269 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G849666 NA non-coding NC_048574.1 CM023228.2 7077962 ~ 7106112 (-)