vkorc1l1 (vkorc1l1,LOC107719344)


Basic Information

Item Value
gene id vkorc1l1
gene name vkorc1l1,LOC107719344
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7244648 ~ 7256667 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922142.2
TCTTCCACGTCTCCGCTCCCGCGGGCCCAATGGTCGGAGAAGGCTGCGTGTGCGAGCAAGGCCGGGAAAAAACATGGCGGCGCCCGTCTTGAGAGTGTCCACCCCTCGATGGGAAAGAATAGCCAGGTTCCTCGTTTGCCTGCTAGGAATACTGCTGTCCGTTTACGCGTTTCACGTGGAGCGGGAGATATCCCGGGATGCGAACTATCGGGCTCTTTGCGACCTGAGCAACTCTATAAGCTGTTCCAAAGTGTTCGGCTCAAGaTGGGGTCGGGGATTCGGCTTGTTGGGGTCCATCTTTGGTAACAACAGTGCAATAAATCAGCCAAACAGTGTCTACGGACTGTTGTTTTATGTCTTTCAGCTGTTATTAGGCTTGACTGTGAGTGCGATGGCCGCCCTGATTCTCATGACCACGTCCATCGTCTCAGTGATAGGCTCGGTGTACCTGGCCTACATCCTCTACTTTGTCCTGAAAGACTTCTGCATCATCTGCATTACCACATATGCACTGAACTTCATTCTACTCGTGCTTAACTACAAGAGGCTGGTCTACTTGAATGAGGCCTGGAAGCAACAGCTAAAGCGggactaaaagaaaaaagtgaaaatacaaggattaaaaaaaaaacaaaagaaatgtgaCCTCCGAACGTTTGACTTGCCACCGGGAGACCTTGCTTCCAAACCAGTGTCTATTCTGCGTACATGTAATAACGAAAATACCCAAtctgaagaaaattaaaatccTAGGGCCGCAGATCACAagttcatttgcatttacaaaGGAAGGatctaaaacagattttttttttttttttttggttcagtttatttttttttggtgttctgtgtttcttgCTCATGAGGGATGGGGCCAGGATAAGCGGAGTCAAAGAAAGATCACGAAAGCACTCACAGAGAAACAGCTACGAGTATGGACAGAGGAAATCCTGTGAAGAACAAAGCGAACAGGAGAAGTGTAGAGAAGGCATAGGCCTGTCAAATGGTGCTTACTTGAATCCAGTGGAAAAGTCTTGTTTTTGTAGAGCTGTACATCAACTGAATTATGGgctttttaatgaataaaagtgCATGATCATGAGGTTTATGTACGGTTCACAGAGGTAATTCcattaaaagacagaaaaaggatAGAAATcgttaaaaaacaaataaattgtaattttatgtttacagttttttatttctttttgagtAAGACCACTAATTTTTAACTATGGGAGAATTGTGAGATGTTGGTGTGTAGATCAAAATCATTATATCATctacagttttgttttattctgcaGTTCCCTAGGTAGATATTGTGTCAGAGTTACTTGgacagtttttgttttagtgttattaaaaaaaatggacaaagtaCAGCAACATTACTTCTgataagtaaaaacaaaaatgtttgtctTGAGATGATTTCATCTTACAATTGTGTTGTAGATCTGCACCAAGCTCTCACATTCCAGTTTTTACTCATTGTAGCGATTAATAGGCATCCGTTAAGTTTAGTCATAATTTGGTTAAATTGCACCTAAGAAGGAGTAAGGTTCCTTCTTAGTCCTAGGTCAGGCGTagtgtttgtttggggaaactCGGAGTTCACAGTCATGAAAAGGCTAACTTGTGAACGAGTCTGCAGCGCAGTGCGTACTTCTCTCCACCCTGCTGAGACAGCTCTTCAGACAAGCTCCCTTTTCTGTACTCTATTGTAAATACTCTTGTATGTCAGCATTCCTGTACACACAGTAACATTCACTAGAGAATAATGTGcctaaaattcttttttttgtccttgaCTCGAAATGTGTTGTACTTAAAAGTATTTCATTGTG

Function

symbol description
vkorc1l1 Predicted to enable vitamin-K-epoxide reductase (warfarin-sensitive) activity. Predicted to be involved in peptidyl-glutamic acid carboxylation and vitamin K metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; liver; muscle; and vertebra. Orthologous to human VKORC1L1 (vitamin K epoxide reductase complex subunit 1 like 1).

NR:

description
PREDICTED: vitamin K epoxide reductase complex subunit 1-like protein 1

GO: NA

KEGG:

id description
K05357 VKORC1; vitamin-K-epoxide reductase (warfarin-sensitive)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922142.2 True 1856 mRNA 0.41 3 7244648 7256667

Neighbor

gene id symbol gene type direction distance location
hpda LOC108260398,LOC108413266,LOC105896091 coding downstream 173908 7060062 ~ 7070740 (-)
supt4h1 supt4h1,LOC107654296,LOC107563417 coding downstream 289736 6950274 ~ 6954912 (-)
ywhag1 143g1,LOC108437655,LOC103041195,LOC101160255 coding downstream 436386 6795319 ~ 6808262 (-)
rpain rpain coding downstream 578528 6662905 ~ 6666120 (-)
znhit3 znhit3 coding downstream 586659 6654064 ~ 6657989 (-)
dhx33 dhx33 coding upstream 9218 7265885 ~ 7274856 (-)
LOC113531276 LOC108260270 coding upstream 127841 7384508 ~ 7408506 (-)
zdhhc12b zdhhc12,zdhhc12b,LOC103035983,LOC108429732,LOC107712389,LOC107737479,LOC107681847 coding upstream 177348 7434015 ~ 7441994 (-)
uap1l1 LOC108260439,LOC108429733 coding upstream 185544 7442211 ~ 7450541 (-)
slc25a25b slc25a25,LOC107587368 coding upstream 198923 7455590 ~ 7486624 (-)
G382715 NA non-coding downstream 64740 7102576 ~ 7179908 (-)
G382550 NA non-coding downstream 308032 6936387 ~ 6936616 (-)
G382514 NA non-coding downstream 310044 6933709 ~ 6934604 (-)
G382515 NA non-coding downstream 311519 6930168 ~ 6933129 (-)
G382202 LOC108260093 non-coding downstream 699788 6544276 ~ 6544860 (-)
G382855 NA non-coding upstream 189126 7445793 ~ 7446511 (-)
G382880 NA non-coding upstream 265229 7521896 ~ 7527576 (-)
G382879 NA non-coding upstream 275624 7532291 ~ 7536966 (-)
G382930 NA non-coding upstream 389455 7646122 ~ 7646482 (-)
G383328 NA non-coding upstream 698504 7955171 ~ 7955413 (-)
LOC113531451 LOC108260064 other downstream 420204 6809425 ~ 6824444 (-)
emc6 emc6 other downstream 836810 6321762 ~ 6407838 (-)
G382054 ubb,ubc,UBC,LOC107553588,LOC107567755,LOC104616321,LOC107658630 other downstream 860964 6318977 ~ 6383684 (-)
LOC113531045 NA other downstream 982182 6260616 ~ 6262466 (-)
LOC113531562 LOC108260327 other downstream 1007043 6224444 ~ 6237605 (-)
G382719 cit other upstream 19004 7275671 ~ 7359971 (-)
si:dkey-220k22.3 NA other upstream 392626 7649293 ~ 7656124 (-)
camkk1a camkk1,LOC107664416,LOC107587369,LOC107664519 other upstream 542971 7799638 ~ 7895729 (-)
atp2a3 atp2a3,LOC107587360,LOC107597397,LOC107712375,LOC107664518,LOC107748501 other upstream 632393 7889060 ~ 7986733 (-)
pdzd3b LOC108260234 other upstream 1081841 8338508 ~ 8348269 (-)

Expression


Co-expression Network