LOC113531451 (LOC108260064)


Basic Information

Item Value
gene id LOC113531451
gene name LOC108260064
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6809425 ~ 6824444 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU453500
ATCAATAGTACAGGTATCCTGGTGGCTCCTTCCTCAGACTGCCATGCGAGGCCAGCGTGTGTCCAATAGTGTGTGCAGGTGCTCGAAAGCCTTCACATGCGTCCTCATCTCTCTACTGgcctcactgctgctgctggcctTTAACATGCGCCTACCACTCAGTGAATACACAAaacatgcagATCACAAAGTGATGAGACGATCAGTTCTTAG
>XM_034300658.1
CCTTCCTCAGACTGCCATGCGAGGCCAGCGTGTGTCCAATAGTGTGTGCAGGTGCTCGAAAGCCTTCACATGCGTCCTCATCTCTCTACTGgcctcactgctgctgctggcctTTAACATGCGCCTACCACTCAGTGAATACACAAaacatgcagATCACAAAGTGATGAGACGATCAGTTCTTAgcaaTAACAACAGGACAGTCTACACCCAGAGTCTATTGCGGCTGGTGAACGGCAGGAGTCGGTGTGAAGGCCGTGTCGAGGTTCAGCACAATGGTACATGGGGCACGGTATGCGATGATGACTGGGACATGGTGGACGCCAACGTGGTGTGCCGACAGCTGGAGTGTGGTCTGGCTGTTGCAGTCGGAACAAGCTCCCGCTTTGGACAGGGCTCTGGGCCTATCCTGCTCGATAACGTTGACTGCAAAGGGGGAGAGACAGAATTGAGCCAGTGTGGCAATCAAGGCTGGGGCATCCACAACTGCTACCATTATGAGGATGTGGCTGTCACCTGCAAAGGTAACACTGTGTTAGGGCTTCAAGGACTTTCTGAGGAGCCCAGCACTCCAGCTCGTAGGAACTCTGGTTTATCAGGGGATGGTTCAATCCGGTTGGTGGGTGGTTTGGACCGCTGCCAGGGCCGCGTAGAAATCTACTACCGGGGCAgctggggaacagtgtgtgacgATGACTGGGGCATGCGAGATGCGGCTGTGGTGTGCCAGCAGGTTGGATGTGGCCCTGTCGTCACCTACACCACCAACGCCTACTTTGGCTATGGCAAAGGTCTCATCCTCTTGGACAATGTACACTGCAGTGGCTCAGAGAGCCAACTGGCCACATGCTACAGCCTTGGATGGGGGATTCATAACTGCGGTCATCACGAggatgctggagtcatctgcaCAAGACTGACCACCACCACTGCTCCTCCTGTGAATACAGAAACCATAGACAATGCTTTCTTCCATACTGAGATCCCAGCAGAGACAGGAATGACTATTCCAGTTACAGAGACAACACCAGCTAATCCAACCACATCCTTTACCACAAAAGAGCAGCCCACCGTCCGTGTAGTGAATGGGAACAGCAGCTGTCAGGGCCGTGTGGAGGTCTTCTACGAAAACATCTGGggcacagtgtgtgatgatgagtGGGATATGGAGAAcgctcaggtggtgtgcaggCAGCTGGGGTGTGGCCCGGCCATGGCGGCCATCTCCCTGGCATACTTTGGCTACGGCTCTGGTCCCATCCTGCTCGACAACGTGGACTGTGAGGGCAATGAGAGGCTGCTGGCTGACTGCTTCAACTTGGGTTGGGGACAGCACAACTGTGGACATCAtgaagatgctggagtcatctgctcAACTTCCCCAGCCTGGGCAGGAACATCAAGAAGCTTTGGAGTGACTGATAGGATCATCACCACTCCCCCACCAGTGGAGGgtgcTCTGAGGCTCTCAGGTGGTCCGCACCGCTGCGAGGGCCGAGTAGAGCTGTATCAAAGTGGCACATGGGGCACTGTGTGTGACGATGCCTGGGACCTCCCCGATGCCCAGGTGGTATGCAGGCTGCTGGGCTGCGGTGATGCCATAGCCGCACAGGTGgagtccttctttggaccaggCGTTGGCAACATTCTCCTGGACAATGTGAAGTGCACAGGCACAGAGCTGTCCCTCCAGCAGTGCTCCCACATACCATGGGACGTGCACAACTGTGACCACTCAGAGGATGCCGGTGTGACGTGCTCACTCACATGACTTCGCCCATCCACAGAAGCCACTCCCCTTCTACCTGTGGTCTACAGAGCAGCGGGGAATGGAGTATGTAGACAACAGGACatgtacattttgtaaatatCCACTCACATTGATACGCTGAAGATATAAAAAGCTACTGGATGATCTGAAACCAaaagaaatgacaaattatGCTTATATACAGAAATTggtcaattttattttatttatgcactttatgaatgtatgaataCCAAATGCGTATAAACTGTATGTACAAATATGACACACcaaatttttccacatttcttaTGTAAAAGTAATTGATACACAATGGAAATACAAACTGTTATCCCctatttttttcctatataCAATATTAAGATATTTAATATGCAAGTATGTTATGCTAGTCATGCTTGCCATTGCATTGTGGAGATGCTGGGACATTCATTATTCACATCACTATAAAAGTTTTGGCTAAACCCTAAAATACTCAAAATACGAATAGATGGGTAATCAGAAAGtgtttttatattctatatattctaaataaacagctataaatattACACCAAAGGTCATCTAGAAAAAGATAACCTGAAAACATATGTCTATAGATATCTagaatatttagatttaaaaaaagatattctcAGGTTTAAAGATCTCTAATTACATTAAgtaaaaatgatgtaaacatCTCGCAAATCGAGAGCTTCTGTTATCACATGAACGTTCTTTATCCTTATCTAAAGCCACTCAAAGCTGCCCGAGTAGCCAGAGCTGACTGATCGGGGTTCTGGAAGCATAAATTGTTCTGTAAAGCATGTGTGggcttttttctttgtttttagaAGTGATCACATTCATTGCAGGATGTAATGATTCCTAATTTAACATTTGACCGCTGTGACTGGACCATTTTTGAACAACATGGGAAATACGGTGTACGCAACTGGACTTTTTTGTTGCACAGATATTTACAAAATGTTGGGGAATAAAGTATCTCTTGTATTCTATCAGATGCTCTTTTTCAAGGGGAAAAAGCTTCGTGAATAAGACATCTCTAAAATACTTTTTGATAAAACCTACAATAAGACTTTAGATGTTTATTCTACAAACTTGGTGCTTAAAGATATTAAACGTTTCATCACATTTTCGGCACTagctttatgtgtgtatgtttcctttcctttcttccttcctttctttagGTTCATGGCATTAATGACTTTGTCAGGTTAAGAAGAGGGAGGTCCTGATTATCGACACTCATTATAGGTATCAGGGtgatatgaaaatgaaattctgTGCTGGTATTGGATTAGATTTGACATATTCTTTAATATGATTCACTGATGTAGGTGTACAAATTGTATGACGTTGCTTGACAAAGGTGCAGAGCGTCAGCTTGGGTACTAAGAGAATGTCAGTTGGCTCAATATTGGGTATTGGCCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU453500 False 213 lncRNA 0.51 3 6819608 6824444
XM_034300658.1 True 3214 mRNA 0.46 11 6809425 6820384

Neighbor

gene id symbol gene type direction distance location
ywhag1 143g1,LOC108437655,LOC103041195,LOC101160255 coding downstream 1163 6795319 ~ 6808262 (-)
rpain rpain coding downstream 143305 6662905 ~ 6666120 (-)
znhit3 znhit3 coding downstream 151436 6654064 ~ 6657989 (-)
pigw pigw coding downstream 176757 6628748 ~ 6632668 (-)
ggnbp2 ggnbp2 coding downstream 183774 6611840 ~ 6625651 (-)
supt4h1 supt4h1,LOC107654296,LOC107563417 coding upstream 125830 6950274 ~ 6954912 (-)
hpda LOC108260398,LOC108413266,LOC105896091 coding upstream 235618 7060062 ~ 7070740 (-)
vkorc1l1 vkorc1l1,LOC107719344 coding upstream 420204 7244648 ~ 7256667 (-)
dhx33 dhx33 coding upstream 441441 7265885 ~ 7274856 (-)
LOC113531276 LOC108260270 coding upstream 560064 7384508 ~ 7408506 (-)
G382202 LOC108260093 non-coding downstream 264565 6544276 ~ 6544860 (-)
G382200 NA non-coding downstream 266581 6542567 ~ 6542844 (-)
G382199 NA non-coding downstream 267880 6541342 ~ 6541545 (-)
LOC113531571 NA non-coding downstream 273991 6534109 ~ 6535434 (-)
LOC117596268 NA non-coding downstream 275726 6524969 ~ 6533699 (-)
G382515 NA non-coding upstream 105724 6930168 ~ 6933129 (-)
G382514 NA non-coding upstream 109265 6933709 ~ 6934604 (-)
G382550 NA non-coding upstream 111943 6936387 ~ 6936616 (-)
G382715 NA non-coding upstream 278132 7102576 ~ 7179908 (-)
G382855 NA non-coding upstream 621349 7445793 ~ 7446511 (-)
emc6 emc6 other downstream 401587 6321762 ~ 6407838 (-)
G382054 ubb,ubc,UBC,LOC107553588,LOC107567755,LOC104616321,LOC107658630 other downstream 425741 6318977 ~ 6383684 (-)
LOC113531045 NA other downstream 546959 6260616 ~ 6262466 (-)
LOC113531562 LOC108260327 other downstream 571820 6224444 ~ 6237605 (-)
LOC113531448 lrrc75a,LOC108430414 other downstream 635658 6148280 ~ 6173767 (-)
G382719 cit other upstream 451227 7275671 ~ 7359971 (-)
si:dkey-220k22.3 NA other upstream 824849 7649293 ~ 7656124 (-)
camkk1a camkk1,LOC107664416,LOC107587369,LOC107664519 other upstream 975194 7799638 ~ 7895729 (-)
atp2a3 atp2a3,LOC107587360,LOC107597397,LOC107712375,LOC107664518,LOC107748501 other upstream 1064616 7889060 ~ 7986733 (-)
pdzd3b LOC108260234 other upstream 1514064 8338508 ~ 8348269 (-)

Expression


Co-expression Network