G382202 (LOC108260093)


Basic Information

Item Value
gene id G382202
gene name LOC108260093
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6544276 ~ 6544860 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU453177
CTTTAAGATTATGAAATGTAATAACATGAATGTCTTGTTCAtttaattagtaaataattataattaataagcTAAATAATTAAAGGGGAAATTGATCATGAATAAATATGGTAGGTATTGCAAGAAGAAAGccatgtaatgatttataagtaaataatttactcaatttaatactttatatgtaaaataattaaagctaAATGAGTGTGAtgtatcttaaaaaaaacaaacaaaaaaaaacatcaattaaGTCTTATTATTTTGCGTGTAGTACATCATCATCTCACCTCCTGGAGTCTCTGTTCTTGCTGTTGAGCATATGCTGGGATTGATGGGAAATGGTGCTCTGGCTCAGTTCCTCCTGGCCACAGGCCAATCCAGCACCTCCACTCTTCATAAATGCTGATAAGAAAGGGTTGGAGACAGGCATGGGTGCAGCTTTCATGTGCGGTAGGCACAGTGCACCAGTGGACTCCACTGAGCTGGAGACTTgttcatcttcctcatcatccGTGTCCAGTAGACTTGCTGAGAAGGTGAAAAATGATCATATGCATTATTGAGAGCACTTAAGATTTCCTGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU453177 True 585 lncRNA 0.36 1 6544276 6544860

Neighbor

gene id symbol gene type direction distance location
fam222ba fam222b,LOC108437643,LOC106603497,LOC106567988,LOC107680824 coding downstream 26810 6454941 ~ 6517466 (-)
cenpv cenpv,LOC107746825,LOC107680877 coding downstream 168043 6369797 ~ 6376233 (-)
ncor1 ncor1 coding downstream 200968 6266788 ~ 6343308 (-)
LOC113531046 NA coding downstream 284015 6256584 ~ 6260261 (-)
LOC113531044 NA coding downstream 292844 6247885 ~ 6251432 (-)
LOC113531624 flot2,flot2a,LOC102783242,LOC102192314,LOC100700865 coding upstream 2049 6546909 ~ 6572843 (-)
dhrs11a dhrs11,LOC107562199,LOC107654319,LOC107591475,LOC107665172 coding upstream 34250 6579110 ~ 6609963 (-)
ggnbp2 ggnbp2 coding upstream 66980 6611840 ~ 6625651 (-)
pigw pigw coding upstream 83888 6628748 ~ 6632668 (-)
znhit3 znhit3 coding upstream 109204 6654064 ~ 6657989 (-)
G382200 NA non-coding downstream 1432 6542567 ~ 6542844 (-)
G382199 NA non-coding downstream 2731 6541342 ~ 6541545 (-)
LOC113531571 NA non-coding downstream 8842 6534109 ~ 6535434 (-)
LOC117596268 NA non-coding downstream 10577 6524969 ~ 6533699 (-)
G382066 NA non-coding downstream 243120 6300629 ~ 6301156 (-)
G382515 NA non-coding upstream 385308 6930168 ~ 6933129 (-)
G382514 NA non-coding upstream 388849 6933709 ~ 6934604 (-)
G382550 NA non-coding upstream 391527 6936387 ~ 6936616 (-)
G382715 NA non-coding upstream 557716 7102576 ~ 7179908 (-)
G382855 NA non-coding upstream 900933 7445793 ~ 7446511 (-)
emc6 emc6 other downstream 136438 6321762 ~ 6407838 (-)
G382054 ubb,ubc,UBC,LOC107553588,LOC107567755,LOC104616321,LOC107658630 other downstream 160592 6318977 ~ 6383684 (-)
LOC113531045 NA other downstream 281810 6260616 ~ 6262466 (-)
LOC113531562 LOC108260327 other downstream 306671 6224444 ~ 6237605 (-)
LOC113531448 lrrc75a,LOC108430414 other downstream 370509 6148280 ~ 6173767 (-)
LOC113531451 LOC108260064 other upstream 264565 6809425 ~ 6824444 (-)
G382719 cit other upstream 730811 7275671 ~ 7359971 (-)
si:dkey-220k22.3 NA other upstream 1104433 7649293 ~ 7656124 (-)
camkk1a camkk1,LOC107664416,LOC107587369,LOC107664519 other upstream 1254778 7799638 ~ 7895729 (-)
atp2a3 atp2a3,LOC107587360,LOC107597397,LOC107712375,LOC107664518,LOC107748501 other upstream 1344200 7889060 ~ 7986733 (-)

Expression


Co-expression Network