cenpv (cenpv,LOC107746825,LOC107680877)


Basic Information

Item Value
gene id cenpv
gene name cenpv,LOC107746825,LOC107680877
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6369797 ~ 6376233 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922403.2
TTACACAAGCCTTTTGTTAGGAAACCGAGTCCCGGGTTAACACCTTTCATCCTTACAACAGTTGCTCATTACAAAAGAAACTTCAGTGGGATATGGAGGAGAACAGGAAAGCAGGTCTGGTGAAGCACACAGGCGGCTGCCACTGTGGTGCTATCCGTTTCGAGGTGTGGAATTCTGCGGATTTGCACGTATTTGATTGCAATTGTAGCGTTTGTACCAAGAAGCAGAACCGCCATTTTATTGTTCCCAAGGCCCACTTTACATTGCTTCAGGGCTCAGCGAACATAACCACGTACACATTCAATACACACGCAGCCAAGCACACCTTTTGCAAGATATGCGGCGTGCAAAGTTTCTACACACCCCGATCGAATCCTGACGGCTTTGGTGTGGCTCCGCATTGCCTGGACCCTGGAACTGTAAAGAGTGTGATGGTTGAACATTTCTGTGGGGAGAACTGGGAGGAAAGCATGCAGAAACACAAAACTATCAGGAGCATGTCCAAGCCTACAAAAGAAGCCAAATAATCTATCAATACACAAAtatgacctttaaaaaaatgattaatcaTTAATTTAGTTTTGGTCAGATTTAAAGGATAAGCTACACTAGCTACCTCTAAAGCAATGGTTCTGAAAGTAGAGGTATCACTTGGGATAATTATGAGGCCATCTCTGAGTTAATACAGGTGCATAAGGCACAGCTGGAATAGAGAACCTCTGTTTTAAATCGCATATTATTGTTGAATTACTCATATTCTGTAGTGTTTCACACACTGTGTAGCATGGTGAGATGGTGTGCATGCTAACACACTTGGAAACTAACACAGGTATTTCCAGAGAAATAATCATCAAGATTTATCAGCATCACttatatgtggaaaaaaaatatctgactAAACAGTCAGTCAGATTATAACAATCTGTTGGCTGTTATCTGTTGGTTGATCTGTTGATCCCCATGTTCATCTGGTTAAATCTTaggattttaatgaaataacagTGACACAAACTATTTACAAAGTGTATTCAGGTATACAAAGTTAtttggtacagtacacagtctTACTCTTGTGCACAGCAgattaaaaacagaacaaagtCTTAAGCTGCTTTCACACTGCATGTTTGGCTGTATATATGGTTTTAGCAAACATTCCACGTAAGatggaatgaaatgtttaaataatgttccACTTGAACAGGTTATGTAGTTTTGAAGGTATTTAAAGTCCAAGAATAACTGAACTGTGGAGTGTGAAAGTGGTATTAAAGTAGTAGTGTAAGAAAACACAGAACATGTAACagctgtaaacatttttaaacatttttttaaataaagcagaatTTCAGTAAattgatttttgtgtgtgcaggGCATTGATGAAGGATGAAATTgtaaaaaattgtgaaaaaaaatcagtgcttTAGTTTGGACAGTCACAGTGTACTTTCATTAGAGATCATTCCTTCTAGTAGAACTTCAGATCCTTTTTCTCCACGGGCACGGCTCGGAAGGTGTTGACGAACATGTAGCGTGAGAACAGAATGTAGAGACGTCTGAACCAGAGGAGCTGGGAGCGGTGACGCAACATGGCCTCCTGTTTGTGAAAGAGAGATGGCAATTAATAAA

Function

symbol description
cenpv Predicted to enable carbon-sulfur lyase activity and metal ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head; motor neurons; muscle; retinal outer nuclear layer; and trunk musculature. Orthologous to human CENPV (centromere protein V).

NR:

description
centromere protein V isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016846 carbon-sulfur lyase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922403.2 True 1632 mRNA 0.39 5 6369797 6376233

Neighbor

gene id symbol gene type direction distance location
ncor1 ncor1 coding downstream 26489 6266788 ~ 6343308 (-)
LOC113531046 NA coding downstream 109536 6256584 ~ 6260261 (-)
LOC113531044 NA coding downstream 118365 6247885 ~ 6251432 (-)
LOC113531102 LOC108260326 coding downstream 146038 6211030 ~ 6223759 (-)
sebox LOC108259801 coding downstream 164187 6202046 ~ 6205610 (-)
fam222ba fam222b,LOC108437643,LOC106603497,LOC106567988,LOC107680824 coding upstream 78708 6454941 ~ 6517466 (-)
LOC113531624 flot2,flot2a,LOC102783242,LOC102192314,LOC100700865 coding upstream 170676 6546909 ~ 6572843 (-)
dhrs11a dhrs11,LOC107562199,LOC107654319,LOC107591475,LOC107665172 coding upstream 202877 6579110 ~ 6609963 (-)
ggnbp2 ggnbp2 coding upstream 235607 6611840 ~ 6625651 (-)
pigw pigw coding upstream 252515 6628748 ~ 6632668 (-)
G382066 NA non-coding downstream 68641 6300629 ~ 6301156 (-)
LOC113531450 NA non-coding downstream 122954 6243362 ~ 6246843 (-)
G382040 NA non-coding downstream 235372 6132107 ~ 6134425 (-)
G381987 NA non-coding downstream 254480 6111546 ~ 6115317 (-)
G381817 LOC108259745,LOC108427774,LOC107695997,LOC107741023 non-coding downstream 461375 5906224 ~ 5908422 (-)
LOC117596268 NA non-coding upstream 148736 6524969 ~ 6533699 (-)
LOC113531571 NA non-coding upstream 157876 6534109 ~ 6535434 (-)
G382199 NA non-coding upstream 165109 6541342 ~ 6541545 (-)
G382200 NA non-coding upstream 166334 6542567 ~ 6542844 (-)
G382202 LOC108260093 non-coding upstream 168043 6544276 ~ 6544860 (-)
LOC113531045 NA other downstream 107331 6260616 ~ 6262466 (-)
LOC113531562 LOC108260327 other downstream 132192 6224444 ~ 6237605 (-)
LOC113531448 lrrc75a,LOC108430414 other downstream 196030 6148280 ~ 6173767 (-)
G382036 NA other downstream 261803 6104531 ~ 6107994 (-)
LOC113531542 znf596 other downstream 1237670 5121668 ~ 5132127 (-)
LOC113531451 LOC108260064 other upstream 433192 6809425 ~ 6824444 (-)
G382719 cit other upstream 899438 7275671 ~ 7359971 (-)
si:dkey-220k22.3 NA other upstream 1273060 7649293 ~ 7656124 (-)
camkk1a camkk1,LOC107664416,LOC107587369,LOC107664519 other upstream 1423405 7799638 ~ 7895729 (-)
atp2a3 atp2a3,LOC107587360,LOC107597397,LOC107712375,LOC107664518,LOC107748501 other upstream 1512827 7889060 ~ 7986733 (-)

Expression


Co-expression Network