pdzd3b (LOC108260234)


Basic Information

Item Value
gene id pdzd3b
gene name LOC108260234
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8338508 ~ 8348269 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922069.2
TGTTCCATGTGTAGCCTTGGAAGAGAAGGTGCTTTTGTTGAAGTCAGATAGTGggaacacattacacacacacacacacacgcacacacattccaGCCATTATGAGACTAACTCAATCCACAGGCCCTGCCTATTTCAGCGGATTGAGGGTTCAGCGATCAACAAAGTGTTGGGAAATGCAATGGAATTGACTGCATTCGTCTTCAATCCGAAGGAGGGAGTAGACAATCCAGCCATGGTGATTTCTGAAGATGCAGGGAATTTTAGTGGCCCCTTGCCccgggtgtgtgtgctgaaaagAGAGGAGGGCCAGAATTTCGGCTTCCATCTGCGCTTGGAGAAAGGACGACCAGGTCATATCATCAGGCAGGTGGAATTATTGGGGGCGGCTGAGAAGAGTGGACTGAGGGATGGGGATCGTCTCCTGGAGGTCAATGAACACTTTGTGGATGACATTGAACATATGGAGGCTGCCCACAGGATCCAGATAAGTGGGCCTCAGCTGTGCCTCCTGGTGCTGAGGAGTGATGAATACGAGCAGGCTGTGGCTCAGGGCTGGAACCTGAAGGAACTGTGCAGAGCTCAGCGTGGTGAGGAGTGGAAGCCTCCTCGTCTCTGCCATATCATCAGAAACCATGTGAGCGGCCTGGGCTTTAGCATCCATCCGGTGGAGGGTGAGAAAGGGAAGTTCTCTGTAAGCACAATAACAGAAGGCCCTGCTGAGAAGGCAGGACTGAGAAAAGGAGACCGGCTGATTTGGATCAATGGTGCCATGGCTTCTGAACTCACGCATTCTGCTATTAACAAGATGGTGAAGAAATGCACTGATCACATGACCGTGCTGGTGATAGACAGCAACAGTGAGAAGAGCTACATCCGTAGGAAGATGGCCATTGTGCCAGCCATGGCTGATGCCCCGAGCATGCCATACAAACCCAAAAGAGTGCATCTGGTACAGGGGCCAGATGGCTATGGCTTCCTGCTTAGGCATGAAAATATATCAACAGGACGCAAAGttCATATGGTGCGGGAGATTGATGCAGGCAGTCCTGCAGAAGTGGCAGATATTAAGGATGGAGAGATCCTGTTGGAGGTGAATGGGGAGTCTGTTGATCATTTGTCTCATGAAGAAGTTGTCAGCAAAATCAGAAACAGTGGACTTCAAGTCAGCTTCACCACTATGGCCCTAGAAGGCCAAAATTTCTACACTAAGCTGGGTCTGTCTCCCCTGCTGTTCTGTGAAGATCATTCCTCTGGAGAGGAGCAGCAGGAAACGCCGACTCCAGATGAACAGAGTCCAGAAGCTCTGAGGCTGTTAGAGTCCTTAGTTGAAgcccaggaggagctggaagtCGAGCCCAGACCAAGACTGTGTGAGCTACAGAGAAGCCCTGTGGGATTCGGCTTCCATTTGGGTTGGGTCCAACAGAAACCTGGCACATTTATCAACCAGGTGGCACCTGGAGGTCCAGGAGAAAGTTCTGGCCTCCTGCAGGGTGATGTACTGCTGGAGGTGAATGGACAGAATGTAGAGGATCTGTGTCTAGAAGATGTGATTTTGCTCATGAAGAAAGGAggcagctctctctctttgctaGTGATAGACAGACCAGGTTATGAGTGGATGAAAAAGACTAGAAAGCCCATCACTACTGAAAAAGAAGCAAAGGCCTCCGAGGAGgTACAGGAGCATGAGAGCTCATCTCCCACAAAGCAGTCAGCTCCTGACGAGTGATGCAAGTTCCTTCCTGAGGATTCAGGAAAAGCATTCGGATCCATGGAACAACAATGCTGGGAAATGTGTAACATCACTGGGTGGAAGTTTAGATGACTGTTGAGTCCCCAAATAAAACTTGGCAATTTTTGTCAAAGCAA
>XM_026922070.2
ATTCGTCTTCAATCCGAAGGAGGGAGTAGACAATCCAGCCATGGTGATTTCTGAAGATGCAGGGAATTTTAGTGGCCCCTTGCCccgggtgtgtgtgctgaaaagAGAGGAGGGCCAGAATTTCGGCTTCCATCTGCGCTTGGAGAAAGGACGACCAGGTCATATCATCAGGCAGGTGGAATTATTGGGGGCGGCTGAGAAGAGTGGACTGAGGGATGGGGATCGTCTCCTGGAGGTCAATGAACACTTTGTGGATGACATTGAACATATGGAGGTGCCACAGGATCCAGATAAGTGGGCCTCAGCTGTGCCTCCTGGTGCTGAGGAGTGATGAATACGAGCAGGCTGTGGCTCAGGGCTGGAACCTGAAGGAACTGTGCAGAGCTCAGCGTGGTGAGGAGTGGAAGCCTCCTCGTCTCTGCCATATCATCAGAAACCATGTGAGCGGCCTGGGCTTTAGCATCCATCCGGTGGAGGGTGAGAAAGGGAAGTTCTCTGTAAGCACAATAACAGAAGGCCCTGCTGAGAAGGCAGGACTGAGAAAAGGAGACCGGCTGATTTGGATCAATGGTGCCATGGCTTCTGAACTCACGCATTCTGCTATTAACAAGATGGTGAAGAAATGCACTGATCACATGACCGTGCTGGTGATAGACAGCAACAGTGAGAAGAGCTACATCCGTAGGAAGATGGCCATTGTGCCAGCCATGGCTGATGCCCCGAGCATGCCATACAAACCCAAAAGAGTGCATCTGGTACAGGGGCCAGATGGCTATGGCTTCCTGCTTAGGCATGAAAATATATCAACAGGACGCAAAGttCATATGGTGCGGGAGATTGATGCAGGCAGTCCTGCAGAAGTGGCAGATATTAAGGATGGAGAGATCCTGTTGGAGGTGAATGGGGAGTCTGTTGATCATTTGTCTCATGAAGAAGTTGTCAGCAAAATCAGAAACAGTGGACTTCAAGTCAGCTTCACCACTATGGCCCTAGAAGGCCAAAATTTCTACACTAAGCTGGGTCTGTCTCCCCTGCTGTTCTGTGAAGATCATTCCTCTGGAGAGGAGCAGCAGGAAACGCCGACTCCAGATGAACAGAGTCCAGAAGCTCTGAGGCTGTTAGAGTCCTTAGTTGAAgcccaggaggagctggaagtCGAGCCCAGACCAAGACTGTGTGAGCTACAGAGAAGCCCTGTGGGATTCGGCTTCCATTTGGGTTGGGTCCAACAGAAACCTGGCACATTTATCAACCAGGTGGCACCTGGAGGTCCAGGAGAAAGTTCTGGCCTCCTGCAGGGTGATGTACTGCTGGAGGTGAATGGACAGAATGTAGAGGATCTGTGTCTAGAAGATGTGATTTTGCTCATGAAGAAAGGAggcagctctctctctttgctaGTGATAGACAGACCAGGTTATGAGTGGATGAAAAAGACTAGAAAGCCCATCACTACTGAAAAAGAAGCAAAGGCCTCCGAGGAGgTACAGGAGCATGAGAGCTCATCTCCCACAAAGCAGTCAGCTCCTGACGAGTGATGCAAGTTCCTTCCTGAGGATTCAGGAAAAGCATTCGGATCCATGGAACAACAATGCTGGGAAATGTGTAACATCACTGGGTGGAAGTTTAGATGACTGTTGAGTCCCCAAATAAAACTTGGCAATTTTTGTCAAAGCAA
>XR_003403254.2
TGTTCCATGTGTAGCCTTGGAAGAGAAGGTGCTTTTGTTGAAGTCAGATAGTGggaacacattacacacacacacacacacgcacacacattccaGCCATTATGAGACTAACTCAATCCACAGGCCCTGCCTATTTCAGCGGATTGAGGGTTCAGCGATCAACAAAGTGTTGGGAAATGCAATGGAATTGACTGCATTCGTCTTCAATCCGAAGGAGGGAGTAGACAATCCAGCCATGGTGATTTCTGAAGATGCAGGGAATTTTAGTGGCCCCTTGCCccgggtgtgtgtgctgaaaagAGAGGAGGGCCAGAATTTCGGCTTCCATCTGCGCTTGGAGAAAGGACGACCAGGTCATATCATCAGGCAGGTGGAATTATTGGGGGCGGCTGAGAAGAGTGGACTGAGGGATGGGGATCGTCTCCTGGAGGTCAATGAACACTTTGTGGATGACATTGAACATATGGAGGCTGCCCACAGGATCCAGATAAGTGGGCCTCAGCTGTGCCTCCTGGTGCTGAGGAGTGATGAATACGAGCAGGCTGTGGCTCAGGGCTGGAACCTGAAGGAACTGTGCAGAGCTCAGCGTGGTGAGGAGTGGAAGCCTCCTCGTCTCTGCCATATCATCAGAAACCATGTGAGCGGCCTGGGCTTTAGCATCCATCCGGTGGAGGGTGAGAAAGGGAAGTTCTCTGTAAGCACAATAACAGAAGGCCCTGCTGAGAAGGCAGGACTGAGAAAAGGAGACCGGCTGATTTGGATCAATGGTGCCATGGCTTCTGAACTCACGCATTCTGCTATTAACAAGATGGTGAAGAAATGCACTGATCACATGACCGTGCTGGTGATAGACAGCAACAGTGAGAAGAGCTACATCCGTAGGAAGATGGCCATTGTGCCAGCCATGGCTGATGCCCCGAGCATGCCATACAAACCCAAAAGAGTGCATCTGGTACAGGGGCCAGATGGCTATGGCTTCCTGCTTAGGCATGAAAATATATCAACAGGACGCAAAGttCATATGGTGCGGGAGATTGATGCAGGCAGTCCTGCAGAAGTGGCAGATATTAAGGATGGAGAGATCCTGTTGGAGGTGAATGGGGAGTCTGTTGATCATTTGTCTCATGAAGAAGTTGTCAGCAAAATCAGAAACAGTGGACTTCAAGTCAGCTTCACCACTATGGCCCTAGAAGGCCAAAATTTCTACACTAAGCTGGGTCTGTCTCCCCTGCTGTTCTGTGAAGATCATTCCTCTGGAGAGGAGCAGCAGGAAACGCCGACTCCAGATGAACAGAGTCCAGAAGCTCTGAGGCTGTTAGAGTCCTTAGTTGAAgcccaggaggagctggaagtCGAGCCCAGACCAAGACTGTGTGAGCTACAGAGAAGCCCTGTGGGATTCGGCTTCCATTTGGGTTGGGTCCAACAGAAACCTGGCACATTTATCAAcaGGTGGCACCTGGAGGTCCAGGAGAAAGTTCTGGCCTCCTGCAGGGTGATGTACTGCTGGAGGTGAATGGACAGAATGTAGAGGATCTGTGTCTAGAAGATGTGATTTTGCTCATGAAGAAAGGAggcagctctctctctttgctaGTGATAGACAGACCAGGTTATGAGTGGATGAAAAAGACTAGAAAGCCCATCACTACTGAAAAAGAAGCAAAGGCCTCCGAGGAGgTACAGGAGCATGAGAGCTCATCTCCCACAAAGCAGTCAGCTCCTGACGAGTGATGCAAGTTCCTTCCTGAGGATTCAGGAAAAGCATTCGGATCCATGGAACAACAATGCTGGGAAATGTGTAACATCACTGGGTGGAAGTTTAGATGACTGTTGAGTCCCCAAATAAAACTTGGCAATTTTTGTCAAAGCAA

Function

NR:

description
PREDICTED: Na(+)/H(+) exchange regulatory cofactor NHE-RF4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922069.2 True 1875 mRNA 0.50 12 8338508 8348269
XM_026922070.2 False 1678 mRNA 0.50 9 8338508 8346243
XR_003403254.2 False 1874 misc_RNA 0.50 12 8338508 8348269

Neighbor

gene id symbol gene type direction distance location
atp5l atp5l,LOC107664523,LOC107597515,LOC108233819,LOC107098727,LOC107587353,LOC107387014 coding downstream 2261 8332432 ~ 8336247 (-)
ftr83 LOC108260410,LOC108429748,LOC107712363,LOC107587475,LOC107677412,LOC107664511,LOC107722782 coding downstream 26093 8306374 ~ 8312415 (-)
ruvbl2 ruvbl2,LOC105888489,LOC107664527,LOC107722783 coding downstream 34544 8288568 ~ 8303964 (-)
ube2g1a ube2g1,ube2g1a,UBE2G1,LOC107597432 coding downstream 200110 8126267 ~ 8138398 (-)
ankfy1 ankfy1,LOC107597410,LOC107664513,LOC107587357 coding downstream 215667 8105031 ~ 8122841 (-)
abcg4a abcg4,abcg4a,LOC108261268,LOC108429752,LOC107717882,LOC107722792,LOC107677424,LOC107587350 coding upstream 4131 8352400 ~ 8379442 (-)
dpagt1 dpagt1,LOC107587348,LOC107722798,LOC107717886,LOC107597531 coding upstream 59321 8407590 ~ 8416180 (-)
hmbsa hmbs,hmbsa,LOC107717875,LOC107722788 coding upstream 118944 8467213 ~ 8482453 (-)
stk36 LOC108260317,LOC108271363,LOC107722762,LOC107598122 coding upstream 219016 8567285 ~ 8579445 (-)
c27h11orf53 c28h11orf53,cunh11orf53,LOC107597648 coding upstream 231828 8580097 ~ 8590527 (-)
G383386 NA non-coding downstream 18715 8319585 ~ 8319793 (-)
LOC117596218 NA non-coding downstream 54197 8270854 ~ 8284311 (-)
G383366 NA non-coding downstream 175343 8162782 ~ 8163165 (-)
G383362 NA non-coding downstream 184501 8151418 ~ 8154007 (-)
G383359 NA non-coding downstream 190152 8147877 ~ 8148356 (-)
G383515 NA non-coding upstream 162322 8510591 ~ 8510815 (-)
G383522 NA non-coding upstream 168092 8516361 ~ 8517669 (-)
G383523 NA non-coding upstream 170175 8518444 ~ 8518890 (-)
G383526 NA non-coding upstream 173428 8521697 ~ 8522292 (-)
G383527 LOC108260305 non-coding upstream 177039 8525308 ~ 8526588 (-)
atp2a3 atp2a3,LOC107587360,LOC107597397,LOC107712375,LOC107664518,LOC107748501 other downstream 351775 7889060 ~ 7986733 (-)
camkk1a camkk1,LOC107664416,LOC107587369,LOC107664519 other downstream 442779 7799638 ~ 7895729 (-)
si:dkey-220k22.3 NA other downstream 682384 7649293 ~ 7656124 (-)
G382719 cit other downstream 978537 7275671 ~ 7359971 (-)
LOC113531451 LOC108260064 other downstream 1514064 6809425 ~ 6824444 (-)
hinfp hinfp,LOC107677425,LOC107662995 other upstream 34426 8382695 ~ 8398355 (-)
G383467 h2afx,LOC106516344,LOC107677420,LOC104950138,LOC100693699,LOC108260105,LOC106527800 other upstream 118090 8466359 ~ 8467012 (-)
timm8b timm8b,LOC107598437,LOC107717885 other upstream 489409 8837678 ~ 8839764 (-)
LOC113531288 NA other upstream 571141 8919410 ~ 9008686 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other upstream 672446 9020715 ~ 9070259 (-)

Expression


Co-expression Network