LOC117596218


Basic Information

Item Value
gene id LOC117596218
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8270854 ~ 8284311 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577386.1
GTTCCTCTAACACCACCATGCCTACTGCAGCTGTGACAAACAAATCCGGGGAGATGGAAAGGTACTGATGGAGCATGTTGCAATGAACagactgaaaacaggaaaaagAAGCCTGTGGGAGGTGTTCTGTTCCTAGCAGTTGGGAAAAGCCTTGATCATGTGTGCCGGCTCATCTGTGTGTTTACCTGGCACAGTGAGGTAGTCCCGTAGCCACATTGTTTACTTCAGCTAATTTCAGAAACCTACTGGGCGACTGAGGTGCAGAACAAATTTCTTCACAATGTAGGACTTCATTCAGGTCCCCCAACATCCGGATTGACTCTTTCAGTGCCTGATGAAAATTCAgcctctctccacctctctgtTTGGAGGAATGAAGAAGAGAAACGCTTCTGTTCGGAGCCTGTGAAAGTCTCCATTCTTCCTTCTCAGGTATTTGCAGTACGCACTTTTCACATTAGGGCCCATTCATGCATGACATGCACCCTTTCTGTGAAGTCCCCTAGATCAAATGTCCTGCCCAAGATTATTGActgagatttgttttgttttttttgactcAGTTTGTGTCATTTAGTCTTTTCCTTATTCCAGATTTGTATTTCAAAGTCTTAAACTATCCATGCACAGCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577386.1 True 634 lncRNA 0.44 3 8270854 8284311

Neighbor

gene id symbol gene type direction distance location
ube2g1a ube2g1,ube2g1a,UBE2G1,LOC107597432 coding downstream 132456 8126267 ~ 8138398 (-)
ankfy1 ankfy1,LOC107597410,LOC107664513,LOC107587357 coding downstream 148013 8105031 ~ 8122841 (-)
zzef1 zzef1,LOC107664510,LOC107598082 coding downstream 173712 8022985 ~ 8097142 (-)
si:dkey-220k22.1 LOC108260280 coding downstream 512635 7663108 ~ 7758219 (-)
slc25a25b slc25a25,LOC107587368 coding downstream 784230 7455590 ~ 7486624 (-)
ruvbl2 ruvbl2,LOC105888489,LOC107664527,LOC107722783 coding upstream 4257 8288568 ~ 8303964 (-)
ftr83 LOC108260410,LOC108429748,LOC107712363,LOC107587475,LOC107677412,LOC107664511,LOC107722782 coding upstream 22063 8306374 ~ 8312415 (-)
atp5l atp5l,LOC107664523,LOC107597515,LOC108233819,LOC107098727,LOC107587353,LOC107387014 coding upstream 48121 8332432 ~ 8336247 (-)
abcg4a abcg4,abcg4a,LOC108261268,LOC108429752,LOC107717882,LOC107722792,LOC107677424,LOC107587350 coding upstream 68089 8352400 ~ 8379442 (-)
dpagt1 dpagt1,LOC107587348,LOC107722798,LOC107717886,LOC107597531 coding upstream 123279 8407590 ~ 8416180 (-)
G383366 NA non-coding downstream 107689 8162782 ~ 8163165 (-)
G383362 NA non-coding downstream 116847 8151418 ~ 8154007 (-)
G383359 NA non-coding downstream 122498 8147877 ~ 8148356 (-)
G383356 NA non-coding downstream 125261 8145389 ~ 8145593 (-)
G383343 NA non-coding downstream 147184 8123442 ~ 8123670 (-)
G383386 NA non-coding upstream 35274 8319585 ~ 8319793 (-)
G383515 NA non-coding upstream 226280 8510591 ~ 8510815 (-)
G383522 NA non-coding upstream 232050 8516361 ~ 8517669 (-)
G383523 NA non-coding upstream 234133 8518444 ~ 8518890 (-)
G383526 NA non-coding upstream 237386 8521697 ~ 8522292 (-)
atp2a3 atp2a3,LOC107587360,LOC107597397,LOC107712375,LOC107664518,LOC107748501 other downstream 284121 7889060 ~ 7986733 (-)
camkk1a camkk1,LOC107664416,LOC107587369,LOC107664519 other downstream 375125 7799638 ~ 7895729 (-)
si:dkey-220k22.3 NA other downstream 614730 7649293 ~ 7656124 (-)
G382719 cit other downstream 910883 7275671 ~ 7359971 (-)
LOC113531451 LOC108260064 other downstream 1446410 6809425 ~ 6824444 (-)
pdzd3b LOC108260234 other upstream 54197 8338508 ~ 8348269 (-)
hinfp hinfp,LOC107677425,LOC107662995 other upstream 98384 8382695 ~ 8398355 (-)
G383467 h2afx,LOC106516344,LOC107677420,LOC104950138,LOC100693699,LOC108260105,LOC106527800 other upstream 182048 8466359 ~ 8467012 (-)
timm8b timm8b,LOC107598437,LOC107717885 other upstream 553367 8837678 ~ 8839764 (-)
LOC113531288 NA other upstream 635099 8919410 ~ 9008686 (-)

Expression


Co-expression Network