G383467 (h2afx,LOC106516344,LOC107677420,LOC104950138,LOC100693699,LOC108260105,LOC106527800)


Basic Information

Item Value
gene id G383467
gene name h2afx,LOC106516344,LOC107677420,LOC104950138,LOC100693699,LOC108260105,LOC106527800
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8466359 ~ 8467012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU454625
GCGTGTCAAGTTAGcgaaaaaacatttattcagaaTCGTAGAAaagcacattaacacacatggAAACAATATGGACAATGGAAGTTGCTCTTTTTAGGTAAATTGGGCGGCCCTTAAAAGGGCCTTTGGGTTTTAATGTTAATCAGCACGAGTCCGGGTCATTGTTCAGTATTCTTGCGACTGAGAGGAGCTTTTCTTTCCCGCCTTGCCGGAACTCGGCGCGGCCTGCCCGGTCTTCTTGGGCAGCAGCACGGCCTGGATGTTGGGCAACACACCACCCTGAGCGATGGTCACTCCGCCCAGCAGTTTGTTCAACTCTTCGTCGTTGCGAACAGCGAGCTGAAGATGCCGAGGAATGATGCGGGTCTTCTTGTTGTCCCGGGCTGCGTTACCCGCCAACTCCAGGATCTCAGCGGTCAGATACTCGAGCACGGCGGCCAGGTACACAGGAGCCCCAGCACCGACCCGCTCAGCGTAGTTTCCTTTCCGCAGCAGGCGATGCACACGGCCCACGGGGAACTGAAGACCAGCGCGGGAGCTGCGAGTCTTAGCCTTAGCGCGGGCTTTTCCTCCGGTTTTGCCTCTTCCAGACATGTTCGTGgaagtcttcttcttcttcttcttcttcttctgcttcttccaGCTAAAGAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU454625 True 654 TUCP 0.54 1 8466359 8467012

Neighbor

gene id symbol gene type direction distance location
dpagt1 dpagt1,LOC107587348,LOC107722798,LOC107717886,LOC107597531 coding downstream 50179 8407590 ~ 8416180 (-)
abcg4a abcg4,abcg4a,LOC108261268,LOC108429752,LOC107717882,LOC107722792,LOC107677424,LOC107587350 coding downstream 86917 8352400 ~ 8379442 (-)
atp5l atp5l,LOC107664523,LOC107597515,LOC108233819,LOC107098727,LOC107587353,LOC107387014 coding downstream 130112 8332432 ~ 8336247 (-)
ftr83 LOC108260410,LOC108429748,LOC107712363,LOC107587475,LOC107677412,LOC107664511,LOC107722782 coding downstream 153944 8306374 ~ 8312415 (-)
ruvbl2 ruvbl2,LOC105888489,LOC107664527,LOC107722783 coding downstream 162395 8288568 ~ 8303964 (-)
hmbsa hmbs,hmbsa,LOC107717875,LOC107722788 coding upstream 201 8467213 ~ 8482453 (-)
stk36 LOC108260317,LOC108271363,LOC107722762,LOC107598122 coding upstream 100273 8567285 ~ 8579445 (-)
c27h11orf53 c28h11orf53,cunh11orf53,LOC107597648 coding upstream 113085 8580097 ~ 8590527 (-)
adamts15a LOC108260351 coding upstream 288627 8755639 ~ 8775242 (-)
usf1l LOC108259962,LOC103042741 coding upstream 622715 9089727 ~ 9101289 (-)
G383386 NA non-coding downstream 146566 8319585 ~ 8319793 (-)
LOC117596218 NA non-coding downstream 182048 8270854 ~ 8284311 (-)
G383366 NA non-coding downstream 303194 8162782 ~ 8163165 (-)
G383362 NA non-coding downstream 312352 8151418 ~ 8154007 (-)
G383359 NA non-coding downstream 318003 8147877 ~ 8148356 (-)
G383515 NA non-coding upstream 43579 8510591 ~ 8510815 (-)
G383522 NA non-coding upstream 49349 8516361 ~ 8517669 (-)
G383523 NA non-coding upstream 51432 8518444 ~ 8518890 (-)
G383526 NA non-coding upstream 54685 8521697 ~ 8522292 (-)
G383527 LOC108260305 non-coding upstream 58296 8525308 ~ 8526588 (-)
hinfp hinfp,LOC107677425,LOC107662995 other downstream 68004 8382695 ~ 8398355 (-)
pdzd3b LOC108260234 other downstream 118090 8338508 ~ 8348269 (-)
atp2a3 atp2a3,LOC107587360,LOC107597397,LOC107712375,LOC107664518,LOC107748501 other downstream 479626 7889060 ~ 7986733 (-)
camkk1a camkk1,LOC107664416,LOC107587369,LOC107664519 other downstream 570630 7799638 ~ 7895729 (-)
si:dkey-220k22.3 NA other downstream 810235 7649293 ~ 7656124 (-)
timm8b timm8b,LOC107598437,LOC107717885 other upstream 370666 8837678 ~ 8839764 (-)
LOC113531288 NA other upstream 452398 8919410 ~ 9008686 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other upstream 553703 9020715 ~ 9070259 (-)
f11r.1 f11r other upstream 606740 9073752 ~ 9084084 (-)
LOC113531664 NA other upstream 773704 9240716 ~ 9255445 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031151 h2ax coding NC_007116.7 CM002889.2 30534702 ~ 30535327 (-)
rainbow trout (Oncorhynchus mykiss) G901849 LOC106602874 unknown NC_048574.1 CM023228.2 52450218 ~ 52475365 (+)