LOC113531664


Basic Information

Item Value
gene id LOC113531664
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9240716 ~ 9255445 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU455285
GGAGATCTAAACACAGCGGCTGTCACGTGCCGTGACGTGAGGTAGCGAGTGAGTGATCTAGCTTGTCTCAGGAGTAGCAGTAAGCTAATCGCGAGAAGGTTCGAGAAGGAGAGGATGGAGGGTAAAAAGAGGACAAGAGGAGCTGACAAAGCCAGGTTTAAAACAGAAAGGGCGTTGGAGGATGACGCGGCCAAAGGTCCCAAACCGACAGATACCTTTTCAAGAGGACAAAGCGACTTAcattcaagCCTTGTGACTCACTTTGAATGCAGTTTAATACAGATGAGTCTGATGCTGAgggaagagggaaagagaaagggacCCAGACAGTGATCTTCAGTGAGACAACAGCTCAGGTTCCTGAGCCACATGTGAATGCTAGTGTAGATAAGGAGACTGAGTAAGACACGTTTGGAATAGCTCTgctgattttcatttaaatttcattaaaacaagGCAAATGCAATCGGCTATTGACGGCCACCATACAACTCTCAAACATCTTGAACAAGCCGCAACACCTTCATTGGATGCTGTCGCAACCCTTCAGGCTCAAGTAAAACGTATGTCGGCAGAAATATCTGAGGAGAAATGTATTGATCTGGAAGGCCATGCTAAGAGGCAAAATCTCAGGTTTGGTTTGAAGTGTTTGGCTTGGAAGAGTTACCTCTTTTAGACTGAGTGTACTGAGCCCTTTGCTCCTGTCCCGAGGACACTGAGTCACCATGGCAGTTCATTGACCGGCTGCACTATTGCCATGTTTTGGAGAATATAATGCACAGAGTGTCATTGCTAGGCAAGCTGTCTTTCAACGGCTGTCCCATCCAGATATTCAGAGACTTCCCTGCTGCTGTGGTCAAACGTCGAGCGGCATTTGGCAAAGTAAGACAAGTGCTTCAGAACAAACCTGGGGTTAAGTTTGTAATCGTGTACCCAGCAAACCTTCGTGTGATGTACTCTGATGGAGAGAAAGTTTTCACCGACCCTGACGAGGCACTGAAATTTGCAAACGAATATTTTGGGgtagataaataaatgcatgttgAGTGTCAGAGTCGAGATGAGTGAccgttgttttgtttgtttcgtTTATTAAGTGGACTTGCTGTTGGACTATTGTGAGGTCTCAGAAGGCTAACATACGGAGGA
>XM_026922533.2
AGGTAGCGAGTGAGTGATCTAGCTTGTCTCAGGAGTAGCAGTAAGCTAATCGCGAGAAGGTTCGAGAAGGAGAGGATGGAGGGTAAAAAGAGGACAAGAGGAGCTGACAAAGCCAGGTTTAAAACAGAAAGGGCGTTGGAGGATGACGCGGCCAAAGGTCCCAAACCGACAGATACCTTTTCAAGAGGACAAAGCGACTTAcattcaagATGGTCATGCAGAAGATCGCCATGGTGATGGCAATTGTAGGAGGGTCTAAATGGGGAGAGCTGTTTGGGTATAAAAACAAGGAACCAGAAGGGGTCAAACTTCACACCAACCCAAagcagagaggaacagagaagaATCCATCTGAATAAAAGCACTTCCCGTCTCACTGAACTATGTCTGGAAGCCTGTACGTCATTTTGTACATCATGCTGCTCAAAGCAGTTTCCTGTACTACTGTCTTACCCCCAGTCACTGAAAGTGCTACAACAGAGAGCACCACTACTTTATCCACTCCTGTAACTGATCcacctactactactactactactactactactactactactcctcctcctcctactacgactactactcctactacaactactactcctactacgagtactactaatactactactaatactactactacccCTGAGcctgaaacaaacacaaactccaCTGGAACTCCAGACCCAGGTACAATCGAACCCATGACCAACTCCACTGTCGGCCCCGGTGGCAATACACAGAGTGGTTTAACCGCAGGCGAGGCAGCAGGAGTAGCAGTAGGCACAATCGCCGGGGTGGGCTTGCTGGgtgGAGGGATATATGCTGGCTTGAAGTACAGTGGAAAACTAGGCTAACCTCACCTTTACATTCTTCTTATTCGTCATATTTTCCGCCACCTGGAATGTGCTCAGGCCAAGAGAACAGTTGTTCTTCCACAGAAGAGCGATGGACTTATACAAGTTCTGTGACATGACCTGCAGTTGCCATGCAATCATAcaaaacttttaaattaaatgtataacaATAAGTTTCAtacaaattcattttatttgaatattttgtaattttacatttgacattttattcatatatacatttattttatttctcagtaTCAGTGTTCGTGCCTGCTCCATGTTTACATTTCATTCTTGTTCTACTGATCGATGTTAGGCTCAAATAAGAAGTTTATGGTACGCCAATTTAACCATCACATTGTCAACATGTACCAAATGTACGTGCAGCATTACAGGAACAGCGGAGATAATGCCAAGAGATAACagggtatatgtgtgtgtgtgcatgtgtgtgtgtccaaacaGACATTTGAGTTTAGTGTAATGACGTTAGAACAATGGTGTGAGATTAGAGCAGGTAGTAGGGCATCTTTTTAAATGGAATGTAAATCAATAAACGCTTTTCCtcttaaagaagaaaaaagcagaaaacaaaaaaggagagatatttatttcttcttcacTTTTTAACAGATCATTTCCTCATTTTAGATCACTTAAATTCTATTCTGATGAATAATCACTACAATAAATTAGATTAAAGCC
>XR_004577368.1
aagttcagtTTCATCATTAAGTTTTTCAGTGGCTGCTCTGATGATCTGTTTGCATGAAATCTCTGTGCTTACAGCCTTGTGACTCACTTTGAATGCAGTTTAATACAGATGAGTCTGATGCTGAgggaagagggaaagagaaagggacCCAGACAGTGATCTTCAGTGAGACAACAGCTCAGGTTCCTGAGCCACATGTGAATGCTAGTGTAGATAAGGAGACTGAGTAAGACACGTTTGGAATAGCTCTgctgattttcatttaaatttcattaaaacaagGCAAATGCAATCGGCTATTGACGGCCACCATACAACTCTCAAACATCTTGAACAAGCCGCAACACCTTCATTGGATGCTGTCGCAACCCTTCAGGCTCAAGTAAAACGTATGTCGGCAGAAATATCTGAGGAGAAATGTATTGATCTGGAAGGCCATGCTAAGAGGCAAAATCTCAGGTTTGGTTTGAAGTGTTTGGCTTGGAAGAGTTACCTCTTTTAGACTGAGTGTACTGAGCCCTTTGCTCCTGTCCCGAGGACACTGAGTCACCATGGCAGTTCATTGACCGGCTGCACTATTGCCATGTTTTGGAGAATATAATGCACAGAGTGTCATTGCTAGGCAAGCTGTCTTTCAACGGCTGTCCCATCCAGATATTCAGAGACTTCCCTGCTGCTGTGGTCAAACGTCGAGCGGCATTTGGCAAAATGGTCATGCAGAAGATCGCCATGGTGATGGCAATTGTAGGAGGGTCTAAATGGGGAGAGCTGTTTGGGTATAAAAACAAGGAACCAGAAGGGGTCAAACTTCACACCAACCCAAagcagagaggaacagagaagaATCCATCTGAATAAAAGCACTTCCCGTCTCACTGAACTATGTCTGGAAGCCTGTACGTCATTTTGTACATCATGCTGCTCAAAGCAGTTTCCTGTACTACTGTCTTACCCCCAGTCACTGAAAGTGCTACAACAGAGAGCACCACTACTTTATCCACTCCTGTAACTGATCcacctactactactactactactactactactactactactcctcctcctcctactacgactactactcctactacaactactactcctactacgagtactactaatactactactaatactactactacccCTGAGcctgaaacaaacacaaactccaCTGGAACTCCAGACCCAGGTACAATCGAACCCATGACCAACTCCACTGTCGGCCCCGGTGGCAATACACAGAGTGGTTTAACCGCAGGCGAGGCAGCAGGAGTAGCAGTAGGCACAATCGCCGGGGTGGGCTTGCTGGgtgGAGGGATATATGCTGGCTTGAAGTACAGTGGAAAACTAGGCTAACCTCACCTTTACATTCTTCTTATTCGTCATATTTTCCGCCACCTGGAATGTGCTCAGGCCAAGAGAACAGTTGTTCTTCCACAGAAGAGCGATGGACTTATACAAGTTCTGTGACATGACCTGCAGTTGCCATGCAATCATAcaaaacttttaaattaaatgtataacaATAAGTTTCAtacaaattcattttatttgaatattttgtaattttacatttgacattttattcatatatacatttattttatttctcagtaTCAGTGTTCGTGCCTGCTCCATGTTTACATTTCATTCTTGTTCTACTGATCGATGTTAGGCTCAAATAAGAAGTTTATGGTACGCCAATTTAACCATCACATTGTCAACATGTACCAAATGTACGTGCAGCATTACAGGAACAGCGGAGATAATGCCAAGAGATAACagggtatatgtgtgtgtgtgcatgtgtgtgtgtccaaacaGACATTTGAGTTTAGTGTAATGACGTTAGAACAATGGTGTGAGATTAGAGCAGGTAGTAGGGCATCTTTTTAAATGGAATGTAAATCAATAAACGCTTTTCCtcttaaagaagaaaaaagcagaaaacaaaaaaggagagatatttatttcttcttcacTTTTTAACAGATCATTTCCTCATTTTAGATCACTTAAATTCTATTCTGATGAATAATCACTACAATAAATTAGATTAAAGCC
>XR_004577369.1
AGTTACCATGGAGATCTAAACACAGCGGCTGTCACGTGCCGTGACGTGAGGTAGCGAGTGAGTGATCTAGCTTGTCTCAGGAGTAGCAGTAAGCTAATCGCGAGAAGGTTCGAGAAGGAGAGGATGGAGGGTAAAAAGAGGACAAGAGGAGCTGACAAAGCCAGGTTTAAAACAGAAAGGGCGTTGGAGGATGACGCGGCCAAAGGTCCCAAACCGACAGATACCTTTTCAAGAGGACAAAGCGACTTAcattcaagTTTAATACAGATGAGTCTGATGCTGAgggaagagggaaagagaaagggacCCAGACAGTGATCTTCAGTGAGACAACAGCTCAGGTTCCTGAGCCACATGTGAATGCTAGTGTAGATAAGGAGACTGAGTAAGACACGTTTGGAATAGCTCTgctgattttcatttaaatttcattaaaacaagGCAAATGCAATCGGCTATTGACGGCCACCATACAACTCTCAAACATCTTGAACAAGCCGCAACACCTTCATTGGATGCTGTCGCAACCCTTCAGGCTCAAGTAAAACGTATGTCGGCAGAAATATCTGAGGAGAAATGTATTGATCTGGAAGGCCATGCTAAGAGGCAAAATCTCAGGTTTGGTTTGAAGTGTTTGGCTTGGAAGAGTTACCTCTTTTAGACTGAGTGTACTGAGCCCTTTGCTCCTGTCCCGAGGACACTGAGTCACCATGGCAGTTCATTGACCGGCTGCACTATTGCCATGTTTTGGAGAATATAATGCACAGAGTGTCATTGCTAGGCAAGCTGTCTTTCAACGGCTGTCCCATCCAGATATTCAGAGACTTCCCTGCTGCTGTGGTCAAACGTCGAGCGGCATTTGGCAAAATGGTCATGCAGAAGATCGCCATGGTGATGGCAATTGTAGGAGGGTCTAAATGGGGAGAGCTGTTTGGGTATAAAAACAAGGAACCAGAAGGGGTCAAACTTCACACCAACCCAAagcagagaggaacagagaagaATCCATCTGAATAAAAGCACTTCCCGTCTCACTGAACTATGTCTGGAAGCCTGTACGTCATTTTGTACATCATGCTGCTCAAAGCAGTTTCCTGTACTACTGTCTTACCCCCAGTCACTGAAAGTGCTACAACAGAGAGCACCACTACTTTATCCACTCCTGTAACTGATCcacctactactactactactactactactactactactactcctcctcctcctactacgactactactcctactacaactactactcctactacgagtactactaatactactactaatactactactacccCTGAGcctgaaacaaacacaaactccaCTGGAACTCCAGACCCAGGTACAATCGAACCCATGACCAACTCCACTGTCGGCCCCGGTGGCAATACACAGAGTGGTTTAACCGCAGGCGAGGCAGCAGGAGTAGCAGTAGGCACAATCGCCGGGGTGGGCTTGCTGGgtgGAGGGATATATGCTGGCTTGAAGTACAGTGGAAAACTAGGCTAACCTCACCTTTACATTCTTCTTATTCGTCATATTTTCCGCCACCTGGAATGTGCTCAGGCCAAGAGAACAGTTGTTCTTCCACAGAAGAGCGATGGACTTATACAAGTTCTGTGACATGACCTGCAGTTGCCATGCAATCATAcaaaacttttaaattaaatgtataacaATAAGTTTCAtacaaattcattttatttgaatattttgtaattttacatttgacattttattcatatatacatttattttatttctcagtaTCAGTGTTCGTGCCTGCTCCATGTTTACATTTCATTCTTGTTCTACTGATCGATGTTAGGCTCAAATAAGAAGTTTATGGTACGCCAATTTAACCATCACATTGTCAACATGTACCAAATGTACGTGCAGCATTACAGGAACAGCGGAGATAATGCCAAGAGATAACagggtatatgtgtgtgtgtgcatgtgtgtgtgtccaaacaGACATTTGAGTTTAGTGTAATGACGTTAGAACAATGGTGTGAGATTAGAGCAGGTAGTAGGGCATCTTTTTAAATGGAATGTAAATCAATAAACGCTTTTCCtcttaaagaagaaaaaagcagaaaacaaaaaaggagagatatttatttcttcttcacTTTTTAACAGATCATTTCCTCATTTTAGATCACTTAAATTCTATTCTGATGAATAATCACTACAATAAATTAGATTAAAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455285 False 1149 lncRNA 0.46 2 9254201 9255436
XM_026922533.2 False 1568 mRNA 0.41 5 9240716 9255397
XR_004577368.1 False 2067 misc_RNA 0.42 5 9240716 9255175
XR_004577369.1 True 2226 misc_RNA 0.43 6 9240716 9255445

Neighbor

gene id symbol gene type direction distance location
si:ch211-215c18.3 NA coding downstream 117237 9113444 ~ 9123479 (-)
thy1 NA coding downstream 131935 9105576 ~ 9108781 (-)
usf1l LOC108259962,LOC103042741 coding downstream 139427 9089727 ~ 9101289 (-)
adamts15a LOC108260351 coding downstream 465474 8755639 ~ 8775242 (-)
c27h11orf53 c28h11orf53,cunh11orf53,LOC107597648 coding downstream 650189 8580097 ~ 8590527 (-)
timm22 timm22,LOC107740820,LOC107665041,LOC107731058,LOC107688620,LOC107587673 coding upstream 33566 9289011 ~ 9292581 (-)
ptges ptges,LOC107710751,LOC107693847,LOC107587481,LOC107726289 coding upstream 45729 9301174 ~ 9308503 (-)
usp20 usp20 coding upstream 65212 9320657 ~ 9346311 (-)
med22 med22,LOC107726295,LOC107596962,LOC107693846,LOC107587409,LOC107710756,LOC107691021 coding upstream 103216 9358661 ~ 9367616 (-)
LOC113531509 surf1,LOC107725413 coding upstream 118046 9373491 ~ 9380542 (-)
G384027 NA non-coding downstream 22518 9217990 ~ 9218198 (-)
G384020 NA non-coding downstream 31881 9208632 ~ 9208835 (-)
G384015 NA non-coding downstream 42724 9197783 ~ 9197992 (-)
G384011 NA non-coding downstream 48262 9192255 ~ 9192454 (-)
G384008 LOC108260071 non-coding downstream 51192 9188985 ~ 9189524 (-)
LOC113531656 LOC106579430,LOC107088658 non-coding upstream 1050 9256495 ~ 9258816 (-)
LOC117596217 NA non-coding upstream 56328 9311773 ~ 9316605 (-)
LOC117596221 NA non-coding upstream 169535 9424980 ~ 9426269 (-)
G384260 NA non-coding upstream 525138 9780583 ~ 9786099 (-)
G384271 NA non-coding upstream 540481 9795926 ~ 9796654 (-)
f11r.1 f11r other downstream 156632 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 170457 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 232030 8919410 ~ 9008686 (-)
timm8b timm8b,LOC107598437,LOC107717885 other downstream 400952 8837678 ~ 8839764 (-)
G383467 h2afx,LOC106516344,LOC107677420,LOC104950138,LOC100693699,LOC108260105,LOC106527800 other downstream 773704 8466359 ~ 8467012 (-)
G384811 NA other upstream 1350545 10605990 ~ 10606272 (-)
G384960 NA other upstream 1823267 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 2290864 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 2435789 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 3551756 12807201 ~ 12891295 (-)

Expression


Co-expression Network