G384020


Basic Information

Item Value
gene id G384020
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9208632 ~ 9208835 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU455257
cagagagtgaaacagaCTGTCCTCTTGACATCAGtcttaaaaaacataaacacatactGAATCAGAGAGAGCCGgacacagtgctgtgtgtgaggTTAAAGTTCTGTGCTAGGAAATGAATGGTTGTTACTTTAAATCCATAGTGTTGGGATTTAAAAAGTGAGATCCATTGTTAGGTTCCACCGCTGGGTTCTTGAACAAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455257 True 204 lncRNA 0.41 1 9208632 9208835

Neighbor

gene id symbol gene type direction distance location
si:ch211-215c18.3 NA coding downstream 85153 9113444 ~ 9123479 (-)
thy1 NA coding downstream 99851 9105576 ~ 9108781 (-)
usf1l LOC108259962,LOC103042741 coding downstream 107343 9089727 ~ 9101289 (-)
adamts15a LOC108260351 coding downstream 433390 8755639 ~ 8775242 (-)
c27h11orf53 c28h11orf53,cunh11orf53,LOC107597648 coding downstream 618105 8580097 ~ 8590527 (-)
timm22 timm22,LOC107740820,LOC107665041,LOC107731058,LOC107688620,LOC107587673 coding upstream 80176 9289011 ~ 9292581 (-)
ptges ptges,LOC107710751,LOC107693847,LOC107587481,LOC107726289 coding upstream 92339 9301174 ~ 9308503 (-)
usp20 usp20 coding upstream 111822 9320657 ~ 9346311 (-)
med22 med22,LOC107726295,LOC107596962,LOC107693846,LOC107587409,LOC107710756,LOC107691021 coding upstream 149826 9358661 ~ 9367616 (-)
LOC113531509 surf1,LOC107725413 coding upstream 164656 9373491 ~ 9380542 (-)
G384015 NA non-coding downstream 10640 9197783 ~ 9197992 (-)
G384011 NA non-coding downstream 16178 9192255 ~ 9192454 (-)
G384008 LOC108260071 non-coding downstream 19108 9188985 ~ 9189524 (-)
G384007 NA non-coding downstream 21752 9186651 ~ 9186880 (-)
G383893 NA non-coding downstream 36514 9171838 ~ 9172118 (-)
G384027 NA non-coding upstream 9155 9217990 ~ 9218198 (-)
LOC113531656 LOC106579430,LOC107088658 non-coding upstream 47660 9256495 ~ 9258816 (-)
LOC117596217 NA non-coding upstream 102938 9311773 ~ 9316605 (-)
LOC117596221 NA non-coding upstream 216145 9424980 ~ 9426269 (-)
G384260 NA non-coding upstream 571748 9780583 ~ 9786099 (-)
f11r.1 f11r other downstream 124548 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 138373 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 199946 8919410 ~ 9008686 (-)
timm8b timm8b,LOC107598437,LOC107717885 other downstream 368868 8837678 ~ 8839764 (-)
G383467 h2afx,LOC106516344,LOC107677420,LOC104950138,LOC100693699,LOC108260105,LOC106527800 other downstream 741620 8466359 ~ 8467012 (-)
LOC113531664 NA other upstream 31881 9240716 ~ 9255445 (-)
G384811 NA other upstream 1397155 10605990 ~ 10606272 (-)
G384960 NA other upstream 1869877 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 2337474 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 2482399 11691234 ~ 11698544 (-)

Expression


Co-expression Network