f11r.1 (f11r)


Basic Information

Item Value
gene id f11r.1
gene name f11r
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9073752 ~ 9084084 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU455035
tctttatttttatttttgtacatgaATGAGCTACTTCTTAACAACAGAACAAACTCATTTTGACATGAGAGAAATGTGCTCGCTTAAATATGTAAACCTTTTAAACCTTGTGAAGTCTTTCTTGCTTTGACATTGTACAggtatgtacgtgtgtgtgtgtgtgtgagagcgcgTGTGAGTGCGTGTTTGCATTTGAATAACTACATTTGTatatctttttccaccttcatTTGGCATACAGTAGCTGGAGTATTTAAAATGAGAGGCAAGTTAGTCAACAGCAGTTCTAATATTTATGTGAAGGAAAAAGATCCATACTGTTTACTCATTTGAAATTTTTAAGTTGAACTTAAAACTTTGGtctagttttgtttttctctgtaaaatatgtatatgCAATTTAGTCTTCtaacttttctgtgttttatttgagcCACCCAATAAGCTGTTTAACTAAGCTCGTAGCCTGTGTGACCGGACGTTTGGTGGCCTGGGAGCATTATAATCCATTACCCTTAATATCAATATGTACACTAACATGCACAAAtttgatccaaaaaaaaaaaaaaaaaataaatcctgtgAAACTTGGTTATATTA
>XM_026922452.2
ACTCTCACTACGTCACGAACTGGGCGTGTCCTACCACAGGGCACCTCAGCTGGAGCTCAGGTAGCGAGTTTCAGTCGGAAGGGCGTTTTCGTGTTAAACACCTCGCTGTGAACATTTCAGCTCTTAAGCTCGGAAAACAGACCCAAATTTCTTCAGTGAAACGTGTTTATCATCTTTTCCCACTTGAAAGACGACAGTTTGAAGCGGAATATTTCGTCTAGCCGTCATGTTCTTTGTGTTTGTACTTCTGTGCTGGCAGGCAACAGGCCTCCATGCCTTTAGTGCCTCCACAACTACGCCCAACATTATGGTCAAAGAAAACAGTGGAGCTGATCTGAAATGTGATTATTCGGCTGATTTTGGGGCATCACCTCGAGTGGAATGGAAATTTAGGAGTCTAAAGGGTTCACAGTCCTTCATCTACTTTGATGGCCAGATTACAGATAAGTATAAGGGACTGATGACTCAGTACCAAGGTGGTTTGAGGATTGAAAAAGCCACCAGACAAGACACTGGTGATTATTCCTGTGAAGTGTCTGGTAACATGGGCTACGCAGAAGCTACGATTAAACTAACAGTGCTCGTTCCTCCTTCTGTGCCGATCAGCCAAATCCCCACCTCAGCCACAACAGGCCGGAACGTTCTCCTGACTTGTAACGATAAGGATGGTTCTCCTCCATCCACCTATAAATGGTATAAAGATGGCACCCCTTTGCCTGAAGACCCCAGCAAGTTCCCCGCATTTAAGAACTTGACATACAAAATGAACATGCAGAATGGCAACCTGGAGTTTCCCAGTGTGAGTAAGGCAGACAGTGGAAGTTATTACTGCGAAGCTTCCAATGGCCAGGGGACTCAGCGTGGAGCAGCCGTGGTCATGGAAGTCCGTGATCTGAACGTAGGAGGTATTGTGGCCGGAGTTATTGTAGCACTGCTTGCTGCTGGGTTGCTTTGCTTTGCCCTGTGGTACGCCAGTAGGAAGGGATATCTGCCCAAAATGTCTGAAAGCAAGCCCAAATCAGCAGTGTATACACAGCCTGCGCAGGACTATGGTAATGAGGATGATggGGAGTTCAGACAGAAGCAGTCGTTTGTGGTGTAGCCTCGGTTTGCACTGTCGCAGGTGTAAAGGGTTTTTCCTGCTATAGTCTTTTTCTACAACTCCAGCTCTGggatgtctgtgtgtctatttAAACTGCGTCTTGTCGTTCTGAACTGTTTGCACTGACTCTACGGTAGCAGCGTGATTTTAGAACCATCCACTGAATCATCTTTTTGCACCTTACCAGATGAAATCATGGACCAGCAATAAGATCAATAGTTTCCCCCCACCCCAGTGTAGTAcagaattaaaatgagaatCCTGGCTTTCATCCTGAGAAAGGTGAAAAGAatgagcttttcttttttttttttttttttttttttctctcatttagatttgcagtttttgtctttatttttatttttgtacatgaATGAGCTACTTCTTAACAACAGAACAAACTCATTTTGACATGAGAGAAATGTGCTCGCTTAAATATGTAAACCTTTTAAACCTTGTGAAGTCTTTCTTGCTTTGACATTGTACAggtatgtacgtgtgtgtgtgtgtgtgagagcgcgTGTGAGTGCGTGTTTGCATTTGAATAACTACATTTGTatatctttttccaccttcatTTGGCATACAGTAGCTGGAGTATTTAAAATGAGAGGCAAGTTAGTCAACAGCAGTTCTAATATTTATGTGAAGGAAAAAGATCCATACTGTTTACTCATTTGAAATTTTTAAGTTGAACTTAAAACTTTGGtctagttttgtttttctctgtaaaatatgtatatgCAATTTAGTCTTCtaacttttctgtgttttatttgagcCACCCAATAAGCTGTTTAACTAAGCTCGTAGCCTGTGTGACCGGACGTTTGGTGGCCTGGGAGCATTATAATCCATTACCCTTAATATCAATATGTACACTAACATGCACAAAtttgatccaaaaaaaaaaaaaaaaaataaatcctgtgAAAC

Function

symbol description
f11r Enables PDZ domain binding activity; integrin binding activity; and protein homodimerization activity. Involved in several processes, including cellular response to mechanical stimulus; regulation of GTPase activity; and regulation of actin cytoskeleton organization. Located in bicellular tight junction and plasma membrane. Part of protein-containing complex. Implicated in hypertension. Biomarker of breast cancer and systemic scleroderma.

NR:

description
junctional adhesion molecule A-like

GO:

id name namespace
GO:0048916 posterior lateral line development biological_process

KEGG:

id description
K06089 F11R, JAM1, CD321; junctional adhesion molecule 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU455035 False 600 lncRNA 0.33 1 9073752 9074351
XM_026922452.2 True 2041 mRNA 0.42 10 9073764 9084084

Neighbor

gene id symbol gene type direction distance location
adamts15a LOC108260351 coding downstream 298510 8755639 ~ 8775242 (-)
c27h11orf53 c28h11orf53,cunh11orf53,LOC107597648 coding downstream 483225 8580097 ~ 8590527 (-)
stk36 LOC108260317,LOC108271363,LOC107722762,LOC107598122 coding downstream 494307 8567285 ~ 8579445 (-)
hmbsa hmbs,hmbsa,LOC107717875,LOC107722788 coding downstream 591299 8467213 ~ 8482453 (-)
dpagt1 dpagt1,LOC107587348,LOC107722798,LOC107717886,LOC107597531 coding downstream 657572 8407590 ~ 8416180 (-)
usf1l LOC108259962,LOC103042741 coding upstream 5643 9089727 ~ 9101289 (-)
thy1 NA coding upstream 21492 9105576 ~ 9108781 (-)
si:ch211-215c18.3 NA coding upstream 29360 9113444 ~ 9123479 (-)
timm22 timm22,LOC107740820,LOC107665041,LOC107731058,LOC107688620,LOC107587673 coding upstream 204927 9289011 ~ 9292581 (-)
ptges ptges,LOC107710751,LOC107693847,LOC107587481,LOC107726289 coding upstream 217090 9301174 ~ 9308503 (-)
LOC117596239 NA non-coding downstream 241473 8814661 ~ 8832279 (-)
G383629 NA non-coding downstream 297179 8776251 ~ 8776573 (-)
G383538 NA non-coding downstream 523218 8549013 ~ 8550534 (-)
G383537 LOC108260305 non-coding downstream 526288 8547182 ~ 8547464 (-)
G383536 NA non-coding downstream 527438 8545431 ~ 8546314 (-)
G383841 NA non-coding upstream 11601 9095685 ~ 9097398 (-)
G383893 NA non-coding upstream 87754 9171838 ~ 9172118 (-)
G384007 NA non-coding upstream 102567 9186651 ~ 9186880 (-)
G384008 LOC108260071 non-coding upstream 104901 9188985 ~ 9189524 (-)
G384011 NA non-coding upstream 108171 9192255 ~ 9192454 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 3493 9020715 ~ 9070259 (-)
LOC113531288 NA other downstream 65066 8919410 ~ 9008686 (-)
timm8b timm8b,LOC107598437,LOC107717885 other downstream 233988 8837678 ~ 8839764 (-)
G383467 h2afx,LOC106516344,LOC107677420,LOC104950138,LOC100693699,LOC108260105,LOC106527800 other downstream 606740 8466359 ~ 8467012 (-)
hinfp hinfp,LOC107677425,LOC107662995 other downstream 675397 8382695 ~ 8398355 (-)
LOC113531664 NA other upstream 156632 9240716 ~ 9255445 (-)
G384811 NA other upstream 1521906 10605990 ~ 10606272 (-)
G384960 NA other upstream 1994628 11078712 ~ 11083941 (-)
map1b map1b,LOC107597920 other upstream 2462225 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 2607150 11691234 ~ 11698544 (-)

Expression


Co-expression Network