LOC113531030


Basic Information

Item Value
gene id LOC113531030
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11691234 ~ 11698544 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921484.2
GCGCATGCTCTTTTGGTTCCGAAGTTGGCGCGCAGAGGAAGGTAATGGAAAATTTTCTTGAAGACTGATGTGTTTTTCACACGATTGCACTCACCATTCAAGCTCATGCAAGGTGCCACAGCATGAGGTGGATGtgtaaaaaatgcagctttgagTCAAACAAAAGACTTCAACTTTTAAAACACTTACGGCTCAAGCACGGAAATTCTGGCTGTCAGTCATGCTGATATGCTGATTGCCCttgttcatttaaaacatttaatgctCTACGATTACATTTATCCCGACACCACACAGAATCAGACAAACCAACAGAGGTGCTTTCATTTTGAGTACGAGGTAGTGACTTGTGTATTCAAAAACTGTAGCTTCAGCACAAGCATTTATTCAACCTTTGCTACCCataaacacaggaaacacaataaacactccCTTGAAGATTTTAAAACAGAAGTCTTGAAAAAAATACCCAAATCCCACTGTTTTGCAAAATGATTCAGAGGTCTCTGAGGATGACACAGAACTTGATGAAACTTTGGTTGAAGCAAAAGATAATTTGTCTGACGTTATAAAGAAGAAGTTTGGTCAACTTTTTCTCAAGTTGGAAAGTAATTTCAATGTGTCAAACAGGTGCAATGATCAAATCATAGATGAGCTTCAGTTCATATCCTCCTCTGCATCTGCTCAGTTTTGAATGTTGTTGTTGAGTCCACCATTTGGTGAAAAATCTGTGTGAATCAAACCTTGTCAGTTCAGCTTTAGGGAAAGATGGACCTTTTTCAACTGCATATAAGAGGAGAGAATTtatgaaaacacatttttcagttGTTGAACCAGTAGAATACAtactggacaataaagacaacAGAACATTCCAGTATGTTCCAATACTCCAGTCTTTGTTGCAAGTCTTGAAGAATATCGAAGAAAAGGACCTAGTCACTCAAAAAAACACTGGATGTGCATCACAATACCAGTCCTTCCATGATGGATCTCactttcatgaaaataaatttttcGCAGGCGATGTCAAGATATTAAGTCTTATTCTGTACTTCGATGACTTTGAAGTATGCAATCCCTTGGGAACTTCTCGCAAGATTCACAAAGTCACCGCTGTCTACTGGGTGTTAGGAAACTTTCCAGCACATGCACGATCAACATTGGCATCTATTAATTTAGCCATTCTTTGTAAGGCAGATGACACAAAGCGATTTGGATTTCAGAAAGTACTAGAGCCACTGTTAACCGATCTTCAAAGCTTGGAAAAAGATGGTATTTTTATTCCAAGTCTAGGAAAAGTCATGAAAGGCACTGTGGTGAGCGTGGTTGCTGATAACTTGGGAGCCCATTCTGTGGGAGGATTCGTTGAAAACTTCACGGGATCTCATGTCTGCCAATTTTGTCTTGCAGACAGGTCCCAGTTTCAGACCACAGAAGTAAGATCTGGACTTTTTCTGAGGAGAGATAAAGAGCAGCACACTCTGCATGTTGAGACAGTTTTGTCAAGTCCTACTTCCACTCCTTGCTATGGTGTGAAAAAACAGTGTGCACTGTCTGAAACACTTCATCACTTTCATGTATTACATGACCTTCTTGAAGGTCTTGTTCCAGTGGAACTGGCATTGTCATTTCAAGCCTTTAtcaataagaaatatttttctcttgaGGAGCTCAACAATTGCATTCGACAGTTCCCTTATAAGTGGAGTGACCAAACAAATCGTCCACAAATGATTCTTGCTCATTTTGCCACAAAAAGATCTGTAGGAGGCAATGCGCATGAAAATTGGTGTTTGTTGCGTCTGTTGCCTCTCATGATGGTCTCATGAAAGTACCTGAGGATGATGAAGTGTGGCAGATGTTAATGACCTTAAAAGACATTGTGGAACTTGTGATGGCCCCAGTTCATACAGAGCATTTGCTACCTCGACTCTTTGATTTCTGAGCACCGACACAGATTTCTGGAAGTTTTTCCTCAAGAAAAGCTTCTTCCCAAACACCACTTTCTCGAGCACTACACTGAACTCATTCAGGAATTTGGTCCTCTGGCAGCCTTGTGGACCATGAGATTCAAAGCTAAACATGGCTTTTTCAAAAAAGCTGTCAGACAAACAGGCTGTTTCAAGACCATACTGCTATCCCTTGCAAAAAAACACCAGCTCATGATAGCATTGTATCTCCATGAGTCAAATTTGTACAAGTCATCACTTTCGGTCACAGCAACTTCACAAGTCTCTGTGGATGTCCTAAAGGATGAGATAAAAGATTTGGTGCAACATAGGTATCCACATGTCACAATGGTACATGTACACGACTGACTACCTTAAAGCACTATATTTGCCCCTCTTTTTAGGTGTATGATTATCGAAGTTAATGCTATAGTGAACAAATTTTTAATTAGGATGAATtgttttaattgctttttttttcttttgccgATGTGTACCCCAGCAAAGCTGCCGAATTGTTTTTGAAGAGAATGACATTCACAAATTGGTTCTGCCCTCAGGCATCCCCAGTACTCTTCAGGACCTTAAACGTGTTATCAAAGAGACCTTTAATATTCCAGACTGCTTTACTTTGATGTATGAAGACATGGATTTTGGGGGCCAGTTTCACCTTGAGCTCAATAGATGATGatctcagatcgcaagaccctgcagcagatagtgaggacagctgagaagatcatcggggtctctcttccctcca
>XM_026921485.2
CGAAAACAATTGTCTTGAATTTTACATGTAATCTACGGAGAAATTTAATGTACAGTaaactttaaaatgaactttGCCGGATGCGAGCGGCGCGACGCGTCGCGACAAATGGCAATATAATTCaaggATTGCACTCACCATTCAAGCTCATGCAAGGTGCCACAGCATGAGGTGGATGtgtaaaaaatgcagctttgagTCAAACAAAAGACTTCAACTTTTAAAACACTTACGGCTCAAGCACGGAAATTCTGGCTGTCAGTCATGCTGATATGCTGATTGCCCttgttcatttaaaacatttaatgctCTACGATTACATTTATCCCGACACCACACAGAATCAGACAAACCAACAGAGGTGCTTTCATTTTGAGTACGAGGTAGTGACTTGTGTATTCAAAAACTGTAGCTTCAGCACAAGCATTTATTCAACCTTTGCTACCCataaacacaggaaacacaataaacactccCTTGAAGATTTTAAAACAGAAGTCTTGAAAAAAATACCCAAATCCCACTGTTTTGCAAAATGATTCAGAGGTCTCTGAGGATGACACAGAACTTGATGAAACTTTGGTTGAAGCAAAAGATAATTTGTCTGACGTTATAAAGAAGAAGTTTGGTCAACTTTTTCTCAAGTTGGAAAGTAATTTCAATGTGTCAAACAGGTGCAATGATCAAATCATAGATGAGCTTCAGTTCATATCCTCCTCTGCATCTGCTCAGTTTTGAATGTTGTTGTTGAGTCCACCATTTGGTGAAAAATCTGTGTGAATCAAACCTTGTCAGTTCAGCTTTAGGGAAAGATGGACCTTTTTCAACTGCATATAAGAGGAGAGAATTtatgaaaacacatttttcagttGTTGAACCAGTAGAATACAtactggacaataaagacaacAGAACATTCCAGTATGTTCCAATACTCCAGTCTTTGTTGCAAGTCTTGAAGAATATCGAAGAAAAGGACCTAGTCACTCAAAAAAACACTGGATGTGCATCACAATACCAGTCCTTCCATGATGGATCTCactttcatgaaaataaatttttcGCAGGCGATGTCAAGATATTAAGTCTTATTCTGTACTTCGATGACTTTGAAGTATGCAATCCCTTGGGAACTTCTCGCAAGATTCACAAAGTCACCGCTGTCTACTGGGTGTTAGGAAACTTTCCAGCACATGCACGATCAACATTGGCATCTATTAATTTAGCCATTCTTTGTAAGGCAGATGACACAAAGCGATTTGGATTTCAGAAAGTACTAGAGCCACTGTTAACCGATCTTCAAAGCTTGGAAAAAGATGGTATTTTTATTCCAAGTCTAGGAAAAGTCATGAAAGGCACTGTGGTGAGCGTGGTTGCTGATAACTTGGGAGCCCATTCTGTGGGAGGATTCGTTGAAAACTTCACGGGATCTCATGTCTGCCAATTTTGTCTTGCAGACAGGTCCCAGTTTCAGACCACAGAAGTAAGATCTGGACTTTTTCTGAGGAGAGATAAAGAGCAGCACACTCTGCATGTTGAGACAGTTTTGTCAAGTCCTACTTCCACTCCTTGCTATGGTGTGAAAAAACAGTGTGCACTGTCTGAAACACTTCATCACTTTCATGTATTACATGACCTTCTTGAAGGTCTTGTTCCAGTGGAACTGGCATTGTCATTTCAAGCCTTTAtcaataagaaatatttttctcttgaGGAGCTCAACAATTGCATTCGACAGTTCCCTTATAAGTGGAGTGACCAAACAAATCGTCCACAAATGATTCTTGCTCATTTTGCCACAAAAAGATCTGTAGGAGGCAATGCGCATGAAAATTGGTGTTTGTTGCGTCTGTTGCCTCTCATGATGGTCTCATGAAAGTACCTGAGGATGATGAAGTGTGGCAGATGTTAATGACCTTAAAAGACATTGTGGAACTTGTGATGGCCCCAGTTCATACAGAGCATTTGCTACCTCGACTCTTTGATTTCTGAGCACCGACACAGATTTCTGGAAGTTTTTCCTCAAGAAAAGCTTCTTCCCAAACACCACTTTCTCGAGCACTACACTGAACTCATTCAGGAATTTGGTCCTCTGGCAGCCTTGTGGACCATGAGATTCAAAGCTAAACATGGCTTTTTCAAAAAAGCTGTCAGACAAACAGGCTGTTTCAAGACCATACTGCTATCCCTTGCAAAAAAACACCAGCTCATGATAGCATTGTATCTCCATGAGTCAAATTTGTACAAGTCATCACTTTCGGTCACAGCAACTTCACAAGTCTCTGTGGATGTCCTAAAGGATGAGATAAAAGATTTGGTGCAACATAGGTATCCACATGTCACAATGGTACATGTACACGACTGACTACCTTAAAGCACTATATTTGCCCCTCTTTTTAGGTGTATGATTATCGAAGTTAATGCTATAGTGAACAAATTTTTAATTAGGATGAATtgttttaattgctttttttttcttttgccgATGTGTACCCCAGCAAAGCTGCCGAATTGTTTTTGAAGAGAATGACATTCACAAATTGGTTCTGCCCTCAGGCATCCCCAGTACTCTTCAGGACCTTAAACGTGTTATCAAAGAGACCTTTAATATTCCAGACTGCTTTACTTTGATGTATGAAGACATGGATTTTGGGGGCCAGTTTCACCTTGAGCTCAATAGATGATGatctcagatcgcaagaccctgcagcagatagtgaggacagctgagaagatcatcggggtctctcttccctcca
>XR_003403212.2
GCGCATGCTCTTTTGGTTCCGAAGTTGGCGCGCAGAGGAAGGTAATGGAAAATTTTCTTGAAGACTGATGTGTTTTTCACACGATTGCACTCACCATTCAAGCTCATGCAAGATCAAGAATGAGTTCAGAAGGATAACCACAATTCCCCTGGAGCCAATCTTTCTGCAAAAACTGGACCTCTACACTCCAAAGCTCCtggatttctttaaaatgaaggGTGGGGATACAGGCATAGAAATTAGAAGTGTGCAAGATTCACTCAGCCAGcAAGTTGAAGATAAGTGAGATGCTGTGATTCGCTGCCTGCTTCCCTACCTGGGAGAATCCTATGAGGAGCTCACTGAAGCCTACCAGGATGTCAGCAGAGACAAGATTAAAGATAGCTTCACCAATCATGTAATGAAGATCGTTGTACTGGGCAGCACTGCAGGAGAGGAAGATGCCAACATAGCTGACGTCATCATCGTCATTGAGGGAACTGAGGTGCTGTTGGGATGCAAGAATCTCACAAATGCGTCCCTTCTGCTCATGGGCTTCGTTTACTCCCTGAACTTAAGCTATCCCCCAAAGCTGAgaaacacatttgaagtctTTCAGAAAATCTTTCTTGGGCTGGACGCTTTAAAATTTTCTCTAAAAGTTAGCTCTTagcagttttaaataatatttaaagtaaaGGTTACTCAGGATAACTAAAAAAGATAACTAGGActcttatgtaaaaaaaaaaaaaaaatgcaataaatcataatatatttataagcaTTACTTAAGTAAAATTTCTATACTTGGGAATTCCCAAGTAAACTTAACTAATAATTATGGATAGGCTTTTACTTGGcaaatttttgtaaatttactAGCCTTTTCTGAGTGAAAATTGTTTCCAAGCTTTTTTCAAGTAAATCCTACTccaaatttttttcagtgtaagcGAGTAATAATGATATTGTGATCAATAGTATCGAATGCTGCACTTAGATCtagtaaaattaaaatcacagagtcACCAGAGCCAACTGAagttaaaatgtcatttattactTTGAGCAAGGccgtctctgtgctgtggtttgCTTTAAATCCAGATTGAAACTTTTCAGAGATATCATTTTGAACTAGAAAAGCATGTAATTGATTTAAAACGGCCTTTTCTAAGACCTTAGATAAGAAAGGTAATTTAGAAATGGGACGGTAGTTTGATAAAACACTTGGAtctaaatttgatttttttcaagaATGTATGTGACTGTAACTGTATGTTACTATGGTTACaattgtttattgtattattatattaatttagaATGGTGATTAAActgcaatatataaaaaatataacatgCAAGAGATATGTACATTGTATATACAACAGTACCCAGATTATCCATGGataatatagattatatatagaTACAGATTATATAGAGATGTATAAAGATAACCTAGGATATATATGATCACTATTTCAATTATGTAGAGATAATACAGAATatatagtatagaatagaaCTGCAGTATAATTACAGGCAGTAAAACATCAGTGGCCTAATGGTATAGTGTAGAGTTCAACAGGTTAATGGTTGTGGGGAACAAGCTGGCCCTGAGCCTGCTAGTTCTGGTGCGAATGTTCCTGAATGGAAGGAGGTTGAACAATGTGTGACTGGGAAGGGTGGAGTCCCTAATAAATGTTGCATGCTCTAAGCAGACATCTCCTGTGGTGAAGATGTTCAATGGCTGGGAGTTGGGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921484.2 False 2715 mRNA 0.40 3 11694702 11698544
XM_026921485.2 True 2759 mRNA 0.40 3 11694702 11698303
XR_003403212.2 False 1753 misc_RNA 0.36 5 11691234 11698544

Neighbor

gene id symbol gene type direction distance location
mvb12ba mvb12b,mvb12ba,LOC107557586,LOC107654329 coding downstream 238315 11355674 ~ 11452919 (-)
LOC113523726 NA coding downstream 540210 11147131 ~ 11151024 (-)
mcc mcc,LOC106565572 coding downstream 709320 10834457 ~ 10981914 (-)
coro1cb coro1c,LOC108280777,LOC107740952,LOC108413414 coding downstream 908244 10691244 ~ 10782990 (-)
ssh1b NA coding downstream 1024112 10558236 ~ 10667122 (-)
foxd1 foxd1 coding upstream 291533 11990077 ~ 11991776 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107718646,LOC107596806 coding upstream 312665 12011209 ~ 12019955 (-)
LOC113531392 LOC108259787,LOC108259744,LOC108280851,LOC108427436,LOC108260584,LOC108260664,LOC108260580,LOC108427435,LOC108260581 coding upstream 520550 12219094 ~ 12220034 (-)
enc1 enc1,LOC107655934,LOC107757521,LOC107570861 coding upstream 537597 12236141 ~ 12247565 (-)
gfm2 gfm2 coding upstream 587312 12285856 ~ 12309620 (-)
G385206 NA non-coding downstream 16679 11672860 ~ 11674555 (-)
G385200 NA non-coding downstream 44090 11645885 ~ 11647144 (-)
G385177 NA non-coding downstream 126671 11563608 ~ 11564563 (-)
G385170 NA non-coding downstream 145293 11544646 ~ 11545941 (-)
G385171 NA non-coding downstream 146674 11541789 ~ 11544560 (-)
G385212 NA non-coding upstream 6012 11704556 ~ 11704757 (-)
G385229 NA non-coding upstream 135294 11833838 ~ 11835008 (-)
G385272 NA non-coding upstream 197013 11895557 ~ 11898390 (-)
G385292 btf3,LOC107655933 non-coding upstream 285590 11984134 ~ 12010223 (-)
G385574 NA non-coding upstream 643878 12342422 ~ 12342631 (-)
map1b map1b,LOC107597920 other downstream 63548 11546309 ~ 11627686 (-)
G384960 NA other downstream 607293 11078712 ~ 11083941 (-)
G384811 NA other downstream 1084962 10605990 ~ 10606272 (-)
LOC113531664 NA other downstream 2435789 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 2607150 9073752 ~ 9084084 (-)
garnl3 garnl3,LOC107700942 other upstream 1108657 12807201 ~ 12891295 (-)
selenow1 LOC103044489 other upstream 1917578 13616122 ~ 13680525 (-)
ccdc84 ccdc84 other upstream 3218118 14916662 ~ 14923390 (-)
nrgna NA other upstream 3320349 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 4183794 15882338 ~ 15888059 (-)

Expression


Co-expression Network