G385171


Basic Information

Item Value
gene id G385171
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11541789 ~ 11544560 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456640
aagaattggctttgctgttccaatactttcataGAGGACAGTATATCCTgaataaagctgaaaaaaaaattcttcttgaaattcaaaatattttttattaccacacttttttaaaaagcatgatttTCAAGTGGTTTCAGTTAAATGGGTTATAAGTGATAGTTTCTACGTTGTGTACTTTGTTTAATCTAAAGgctttgttgtttattaatttataatacctttttatttttttagtgtagCCAAAGTATAGTCAACTTGATTGTCGCACACTACTGTGAGACTTGAATTGGTTTTTAATGGCATTGTTCCATCACCCCCTAAAAGTACTTGGCAAAGCACTGAGTATGGATAGCCAAAAGGGTGACATAGattcaaaatgcattttttaaatgaaatatatatatatgtgtgtgtgtttattctaatttatttgtttattaatttaactcTAAGATATACGTTACTAATAATTAAATAGTGCATTAATGTATATTGTaggtattatttattaaatatgatctCACACTGACTACAGGTTTTCAATGTAATAAAGCTGCTATCTGATAGTGTCTGGGGTTGAATATTGTTTCTGACAAATTGTGTGGTAtagaaagtttaaaaagtttaataatgtgcatacacttttatttatttatttatttatttatttatttatttacaatgctCAACTATTTCAGAATTACATGGTAAAACCTGGTGTTACACCATATAGTTACAAACACAAGCATATAACCTTCTATAGTTTAGAGATATAATCAGAGCAATATGATACCGCATATCCAGTCCTGTTCCCAAACTTGATTCACACCACTTTGTTATCAATATTTGAGTGAGTTTAAGTCACTCTAATTATGAAATATTCCATAGTTCGTAGATCCAGTCAGCATAATAGAGTACCTTACTATTTACTTTGAGTGAgaatccacctcaaagtttgcCTATCTATTCTAGATATCAATAACTGACATTCAGGTGGCTCCAATTTAGAAATATTCCTGTTCTcccatttatatttcataaatgCCGTAAGGATAATAGAGTAGAGGACCTCCCAAACTGTGACCATAACTCACCTTAAACTTTGTTATATTGCTGTATTATAGACATCAATCACTGGTTATTTGGGTGGCTCTAATTATGAAATATTCCACAGTTCACAGGTACAATTAGCATAATATAGTAGAGAATTAAATTTACTACTAAATTTGAACCCATACTAACTTTAAACCCATTTTACTGTCAATTTGTTTGACACACCCACCTTAAACGTAGGCTTTTAGACATCATTCACTGATATTTGGGCAGCTCTAATTATGAACTATTCCAAAGTTAACTGACGTAATCAGCATTATTTAGTAGAGCATCTCCCAGAATGTGACCATACTAAATTTGAGCTTATTTTACTGTCAATTTTTGCAGAAAACCCACCTTAAACTTTGATATATTCCTATATTATAGACATGAGTCACTGTTATTCAGGTGGctttaattatgtaaatttcCACAGTTCATAAATGTAATGAGTAGAGGACCATAAATATCTAGTAGAGGACCTTACTTTATGTGATCATACTAAATCTGAGCCCATTTCACTGTCAGTTTGTGaataaaatttgtttgtttatagaagttggtgaggactaCACAATTGTTATATAgtccctgataaataaaaacagaattgatggagaatattttattttatattaggACCATCAATAAATGATATTTGGGTATGACAAATTATGGAACATTGGTTGCTGGGTTCTTTCAGCTTGATCAGACTTATGGTATGTGAGCAAAATGCAATTAAACGTAAAGCCATCCTATATGGATGACCACACCCAAACTTTAGCAGTCAGTCTTAGAACCTAGTCCTGATTACACCTTTCACATTTTGTTCAAATGTATCTCTTCTACCACTGTTGCTACCATTCAAGATTTGTGATGATTGCacaccctgtcaaatgcctgctgaaaactTACTGGCCGATGCTGCCCATGTTTGGGAAGTACCATGTCATCATCAAATAGCCACTTATAGATTAGCACATAGATGCAAAATGCCACATTTCAGCTTAATCAGACTCACTATTCCTGAGAAAACTTAACTCCACCACAATTGATGACCACACCCCAAACTCTGCACACATCCTCAGAACCTTGTGCTGAACTGGCTATTCAAGTTTTATCTATGCAAAGAATTGTAAGTGACAGATGTTTGAGTGAAATACACTCCATCCATTAGGCAATATTGTTTACAAAGTTCAACAAATTCTTGAGAAAGAAGCTCTCCTGAGTCATTTAACATCAACTTTGTGAAGATAGAACAAAAATCCTAAGACTCCTAGGAAAGAGCATTtcgcatattatgcaaattaactTAAAATATCTGTGGGCAGAGCTAAATGTTCCAGATTGACAATTGGttcaaaattaaatcaataaattttactaataaataaataataaatgtcactaataatatataatggaTAACAGTAGTGTTGCACATTGCGCAAtcactaacaataataataacaataataataataataattctgcgGGGTCCAAGAACTCTTTGTGCATCGTCTGCGGGGTCCAAGAACTCTTTGTGTAACAaggtaaaaaatgaaaatgtaagaaaaGTGTAAATGTTGTGCCTTTCATCAAAATGgctgtttttcctccttttttgtTCAAATAATGATGACCTCTGTTGGTGATTTTAAGTATTTGGTGGGTCGT

Function

NR:

description
transmembrane protein 132D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456640 True 2772 lncRNA 0.32 1 11541789 11544560

Neighbor

gene id symbol gene type direction distance location
mvb12ba mvb12b,mvb12ba,LOC107557586,LOC107654329 coding downstream 88870 11355674 ~ 11452919 (-)
LOC113523726 NA coding downstream 390765 11147131 ~ 11151024 (-)
mcc mcc,LOC106565572 coding downstream 559875 10834457 ~ 10981914 (-)
coro1cb coro1c,LOC108280777,LOC107740952,LOC108413414 coding downstream 758799 10691244 ~ 10782990 (-)
ssh1b NA coding downstream 874667 10558236 ~ 10667122 (-)
foxd1 foxd1 coding upstream 445517 11990077 ~ 11991776 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107718646,LOC107596806 coding upstream 466649 12011209 ~ 12019955 (-)
LOC113531392 LOC108259787,LOC108259744,LOC108280851,LOC108427436,LOC108260584,LOC108260664,LOC108260580,LOC108427435,LOC108260581 coding upstream 674534 12219094 ~ 12220034 (-)
enc1 enc1,LOC107655934,LOC107757521,LOC107570861 coding upstream 691581 12236141 ~ 12247565 (-)
gfm2 gfm2 coding upstream 741296 12285856 ~ 12309620 (-)
G385109 NA non-coding downstream 95262 11445861 ~ 11446527 (-)
G385091 NA non-coding downstream 177997 11361533 ~ 11363792 (-)
G385067 NA non-coding downstream 256234 11285329 ~ 11285555 (-)
G385061 mapkap1,LOC107661227 non-coding downstream 264815 11219956 ~ 11276974 (-)
G385060 NA non-coding downstream 322299 11219061 ~ 11219490 (-)
G385170 NA non-coding upstream 86 11544646 ~ 11545941 (-)
G385177 NA non-coding upstream 19048 11563608 ~ 11564563 (-)
G385200 NA non-coding upstream 101325 11645885 ~ 11647144 (-)
G385206 NA non-coding upstream 128300 11672860 ~ 11674555 (-)
G385212 NA non-coding upstream 159996 11704556 ~ 11704757 (-)
G384960 NA other downstream 457848 11078712 ~ 11083941 (-)
G384811 NA other downstream 935517 10605990 ~ 10606272 (-)
LOC113531664 NA other downstream 2286344 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 2457705 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 2471530 9020715 ~ 9070259 (-)
map1b map1b,LOC107597920 other upstream 1749 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 146674 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 1262641 12807201 ~ 12891295 (-)
selenow1 LOC103044489 other upstream 2071562 13616122 ~ 13680525 (-)
ccdc84 ccdc84 other upstream 3372102 14916662 ~ 14923390 (-)

Expression


Co-expression Network