G385109


Basic Information

Item Value
gene id G385109
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11445861 ~ 11446527 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456563
gtcagagtgcccatgctgacccctgtccactcctgaaagcacctacaatgagcacatgagcatcagaactgcaccatggagcaatggaagaaggtagcctggtctgatgcatcatgttttcttttagatcatgtggacagccgggtgtgtgtgcatcgcaTACCTGCGGAGGAGATGGCACCTGGATGCACTATTGGAAGCAGGCAAGCCGGCCagggcagtgtgatgctctgggcaatgttctgcagTGGGtgctggcattcatgtggatgttactttgacatgtaccacctacataaacattgttgcagaccaagtatacCCTTTCATGGCAaaagtattccctaatggcagtagcctctttcagcaggataatgtgccctccCATACAACCCAGTTTATTGTATATCTATTTGTCAGCACAATAATAGTGCTTTTGTAAGAAATTATTTAGCATGTCGTACTAGGGTTGTCACAGTATCAGACTTTTGACTTTGTTACCAATACCAACACCAACGTTGGTAACTGTTAccaagtatgaaaaaaaaaaaaacaaataaaatatatatatatacaccacttaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456563 True 587 lncRNA 0.43 2 11445861 11446527

Neighbor

gene id symbol gene type direction distance location
LOC113523726 NA coding downstream 294837 11147131 ~ 11151024 (-)
mcc mcc,LOC106565572 coding downstream 463947 10834457 ~ 10981914 (-)
coro1cb coro1c,LOC108280777,LOC107740952,LOC108413414 coding downstream 662871 10691244 ~ 10782990 (-)
ssh1b NA coding downstream 778739 10558236 ~ 10667122 (-)
ungb LOC108280186 coding downstream 934151 10507836 ~ 10511710 (-)
foxd1 foxd1 coding upstream 543550 11990077 ~ 11991776 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107718646,LOC107596806 coding upstream 564682 12011209 ~ 12019955 (-)
LOC113531392 LOC108259787,LOC108259744,LOC108280851,LOC108427436,LOC108260584,LOC108260664,LOC108260580,LOC108427435,LOC108260581 coding upstream 772567 12219094 ~ 12220034 (-)
enc1 enc1,LOC107655934,LOC107757521,LOC107570861 coding upstream 789614 12236141 ~ 12247565 (-)
gfm2 gfm2 coding upstream 839329 12285856 ~ 12309620 (-)
G385091 NA non-coding downstream 82069 11361533 ~ 11363792 (-)
G385067 NA non-coding downstream 160306 11285329 ~ 11285555 (-)
G385061 mapkap1,LOC107661227 non-coding downstream 168887 11219956 ~ 11276974 (-)
G385060 NA non-coding downstream 226371 11219061 ~ 11219490 (-)
LOC117596259 NA non-coding downstream 343049 11101827 ~ 11102812 (-)
G385171 NA non-coding upstream 95262 11541789 ~ 11544560 (-)
G385170 NA non-coding upstream 98119 11544646 ~ 11545941 (-)
G385177 NA non-coding upstream 117081 11563608 ~ 11564563 (-)
G385200 NA non-coding upstream 199358 11645885 ~ 11647144 (-)
G385206 NA non-coding upstream 226333 11672860 ~ 11674555 (-)
G384960 NA other downstream 361920 11078712 ~ 11083941 (-)
G384811 NA other downstream 839589 10605990 ~ 10606272 (-)
LOC113531664 NA other downstream 2190416 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 2361777 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 2375602 9020715 ~ 9070259 (-)
map1b map1b,LOC107597920 other upstream 99782 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 244707 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 1360674 12807201 ~ 12891295 (-)
selenow1 LOC103044489 other upstream 2169595 13616122 ~ 13680525 (-)
ccdc84 ccdc84 other upstream 3470135 14916662 ~ 14923390 (-)

Expression


Co-expression Network