G385170


Basic Information

Item Value
gene id G385170
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11544646 ~ 11545941 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456639
ACACCTTTGGcacagaccacccaattttttgGTGAGCAAAATTTTAGGAACAGATAggcttaaagtaaataataattttttttttttttttttgcatatcccATCCtagcaataactgcatcaagctagTAAGCCACtagtacatttatatttatggcatttggcagatgcccttatccagagtgacttacaattatctcatttatacaactgggCAGTTGCATTAAGGggcttgctcaaggacccagcagtggtagcttggtggtgctgggatttgaactctcaaccttccaatcagaaggcCAATGTCTTAATCCATTGATGTATGTTTGGGCGTTTCTCCCTACAGTCTTCTcctcaggaggtgaaatgcatgctcactTGGGTTatggtctggtgattgacttggccaataaaaaccttccacttttttgtATGAAGAGGATGAAGTCCTttgtcattgtcttgctggatGATGAAGTTCTgtccaattagattggatgcatttttctgtaatttggcaGACAGACAGTTTCTGTAGACCTctgaatttattctgctgccaccatcatttgttacatcatcaataaagattagtcaGCACCTTCCAGAAGCaaccatgcaagcccaagccatgacactacctccactgtgcttgacctatgagctcgtatgttttggatcatgagcagatcctttctttctgcacactttggcctttcgattcttactgctgatgagtggttcacatcttgtggtatggcctctatatttctgctcttgaagtcttcttcaaaagatggattgtgatatcttcacccctgccctgtggaggttgttgttgatgtcactgactgttgattttgggtttttcttaacaactctcacaatgtttctgtcatcaactgctgacCAGTTCAGTGTCTgcttgttagtacaccagtggtttctttctttttcagcacattccaaattgttgtattggctatgatGATTTTCCCTCTTAGCTTCAAAGtggcttgtttttctcccacagacagctctctggtcttcatgtagGTTTATCCTTtgtaacaacaaatgcagtcttcacaggtgaaaccccgGGCTCAAAACAAGAGTAGACAtttagagctattaattgtttaaacactcaatctaacagggtacacctgggcaacaagaaacacccgtcagtcacatgttccgctatttttgatcacttgaaaaatgggtgggtcaaacaaaaggtgccatgttctaagttgttcaGAACATCTAGATGTGAAGGCcggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456639 True 1296 lncRNA 0.41 1 11544646 11545941

Neighbor

gene id symbol gene type direction distance location
mvb12ba mvb12b,mvb12ba,LOC107557586,LOC107654329 coding downstream 91727 11355674 ~ 11452919 (-)
LOC113523726 NA coding downstream 393622 11147131 ~ 11151024 (-)
mcc mcc,LOC106565572 coding downstream 562732 10834457 ~ 10981914 (-)
coro1cb coro1c,LOC108280777,LOC107740952,LOC108413414 coding downstream 761656 10691244 ~ 10782990 (-)
ssh1b NA coding downstream 877524 10558236 ~ 10667122 (-)
foxd1 foxd1 coding upstream 444136 11990077 ~ 11991776 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107718646,LOC107596806 coding upstream 465268 12011209 ~ 12019955 (-)
LOC113531392 LOC108259787,LOC108259744,LOC108280851,LOC108427436,LOC108260584,LOC108260664,LOC108260580,LOC108427435,LOC108260581 coding upstream 673153 12219094 ~ 12220034 (-)
enc1 enc1,LOC107655934,LOC107757521,LOC107570861 coding upstream 690200 12236141 ~ 12247565 (-)
gfm2 gfm2 coding upstream 739915 12285856 ~ 12309620 (-)
G385171 NA non-coding downstream 86 11541789 ~ 11544560 (-)
G385109 NA non-coding downstream 98119 11445861 ~ 11446527 (-)
G385091 NA non-coding downstream 180854 11361533 ~ 11363792 (-)
G385067 NA non-coding downstream 259091 11285329 ~ 11285555 (-)
G385061 mapkap1,LOC107661227 non-coding downstream 267672 11219956 ~ 11276974 (-)
G385177 NA non-coding upstream 17667 11563608 ~ 11564563 (-)
G385200 NA non-coding upstream 99944 11645885 ~ 11647144 (-)
G385206 NA non-coding upstream 126919 11672860 ~ 11674555 (-)
G385212 NA non-coding upstream 158615 11704556 ~ 11704757 (-)
G385229 NA non-coding upstream 287897 11833838 ~ 11835008 (-)
G384960 NA other downstream 460705 11078712 ~ 11083941 (-)
G384811 NA other downstream 938374 10605990 ~ 10606272 (-)
LOC113531664 NA other downstream 2289201 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 2460562 9073752 ~ 9084084 (-)
ubash3ba ubash3b,ubash3ba,LOC108259961,LOC106602883,LOC107597727,LOC101074361 other downstream 2474387 9020715 ~ 9070259 (-)
map1b map1b,LOC107597920 other upstream 368 11546309 ~ 11627686 (-)
LOC113531030 NA other upstream 145293 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 1261260 12807201 ~ 12891295 (-)
selenow1 LOC103044489 other upstream 2070181 13616122 ~ 13680525 (-)
ccdc84 ccdc84 other upstream 3370721 14916662 ~ 14923390 (-)

Expression


Co-expression Network