G385200


Basic Information

Item Value
gene id G385200
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11645885 ~ 11647144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456679
CAGACATACAAACCTTTTATGTTTTGCAAAGTTACTATACACTATACGATtagccacaacattaaaaccactgacaggtgaattgaatattatcttgttacaatggcacctgtcaaggggtgagatatTAGGCAGCAAGCAAACAGTCAATTCTCAAAGTCGATgagttggaagcaggaaaaagtggcaagcataaggatctgagtgactttgacaagggccaaattatgatggctagatgactgagATGACAGAGCTTCTGCAAAACTGcgggtcttgtggggtgttcccagtatgtaGTGggtagtacctaccaaaagtggtccaaggaaggacaaccggtgaaccggcaacagggtcatgggtgcccaaggctcactgacgCACATGGAacgtgaaggctagcccatctggtctcaTCCCActgaagagctactgtagcacaaattacagaaaaagttcatgctggctatgatagaaaggtgtcagaacaaaAAGtccatcgcagcttgctgcaaatggggctgcatagctgcagactggCGAGTGTGCTCATGCTGACCCCTATCCAccgctgaaagcacctacaatgggcacatgagcatcagaattggatcatggagcaatggaagaaggtgacctggtctgaggaatcacATCTTTTACAACAAGTGGATGGTCGAATGCATGttcgtcgcttacctggggaagagatggcaccaggatgcactatgggaagtaAGTAAGCGGGCAGacgcagtgtgatgctctgctgggaaaccttgggtcctggcatgcATGTATTACTTTACCATGTACCAcccacctaaacattgttgcagaccaagtacaccccttcacggcaacggtattccctaatagcaGTGACCTTTGCAGCAGGACTACAAAGCACAAAGCTTGGCCAACAGAATTCATCAAGGTAAGCTACGCATCAAAACTAACTGGACACAGAGGAGGTTTGTTCAAAAGCATATGTTGCCATAGTAATTGAGCTGGTCTTAAGATTAGCTTCTTCATGGAATCACAATTGGCAGAAATAAGCCTGAGTTATTGAATTATCTTGCTTCGTGGAATACTCCTCAGCtcgctgtcattttgtgtcatctgttcattagccCAATAACATACACCAGACTTACATCACATAGTATCATagtttttttttttttaaaccaagtcATTGGTCTGCAAGTCACAAGTCAGTCTCAAGTCCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456679 True 1237 lncRNA 0.45 2 11645885 11647144

Neighbor

gene id symbol gene type direction distance location
mvb12ba mvb12b,mvb12ba,LOC107557586,LOC107654329 coding downstream 192966 11355674 ~ 11452919 (-)
LOC113523726 NA coding downstream 494861 11147131 ~ 11151024 (-)
mcc mcc,LOC106565572 coding downstream 663971 10834457 ~ 10981914 (-)
coro1cb coro1c,LOC108280777,LOC107740952,LOC108413414 coding downstream 862895 10691244 ~ 10782990 (-)
ssh1b NA coding downstream 978763 10558236 ~ 10667122 (-)
foxd1 foxd1 coding upstream 342933 11990077 ~ 11991776 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107718646,LOC107596806 coding upstream 364065 12011209 ~ 12019955 (-)
LOC113531392 LOC108259787,LOC108259744,LOC108280851,LOC108427436,LOC108260584,LOC108260664,LOC108260580,LOC108427435,LOC108260581 coding upstream 571950 12219094 ~ 12220034 (-)
enc1 enc1,LOC107655934,LOC107757521,LOC107570861 coding upstream 588997 12236141 ~ 12247565 (-)
gfm2 gfm2 coding upstream 638712 12285856 ~ 12309620 (-)
G385177 NA non-coding downstream 81322 11563608 ~ 11564563 (-)
G385170 NA non-coding downstream 99944 11544646 ~ 11545941 (-)
G385171 NA non-coding downstream 101325 11541789 ~ 11544560 (-)
G385109 NA non-coding downstream 199358 11445861 ~ 11446527 (-)
G385091 NA non-coding downstream 282093 11361533 ~ 11363792 (-)
G385206 NA non-coding upstream 25716 11672860 ~ 11674555 (-)
G385212 NA non-coding upstream 57412 11704556 ~ 11704757 (-)
G385229 NA non-coding upstream 186694 11833838 ~ 11835008 (-)
G385272 NA non-coding upstream 248413 11895557 ~ 11898390 (-)
G385292 btf3,LOC107655933 non-coding upstream 336990 11984134 ~ 12010223 (-)
map1b map1b,LOC107597920 other downstream 18199 11546309 ~ 11627686 (-)
G384960 NA other downstream 561944 11078712 ~ 11083941 (-)
G384811 NA other downstream 1039613 10605990 ~ 10606272 (-)
LOC113531664 NA other downstream 2390440 9240716 ~ 9255445 (-)
f11r.1 f11r other downstream 2561801 9073752 ~ 9084084 (-)
LOC113531030 NA other upstream 44090 11691234 ~ 11698544 (-)
garnl3 garnl3,LOC107700942 other upstream 1160057 12807201 ~ 12891295 (-)
selenow1 LOC103044489 other upstream 1968978 13616122 ~ 13680525 (-)
ccdc84 ccdc84 other upstream 3269518 14916662 ~ 14923390 (-)
nrgna NA other upstream 3371749 15018893 ~ 15026869 (-)

Expression


Co-expression Network