selenow1 (LOC103044489)


Basic Information

Item Value
gene id selenow1
gene name LOC103044489
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13616122 ~ 13680525 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU458486
GCCTCTCGGACTATAAGCGAGGAAATACCTCCGAAACACTTCAGTCCTGCCTCTAAACCCAGAGCTGGCTACCTCCCTAAACCTTCTGCCTGCAGTCAGTGCTTAATCCAGACAAGAGCCTCTACAACCGCCGAAATGGGGGTCAAAATACATGTCATTTACTGtgGTGCATGAGGGTACAGGCCCAAGttCACCAAACTCAAGACGTTGCTTGAGGATGAATTTCCAGGCGACCTTGAGATTACAAGCGAGGGCACTCCCACAACAACTGGCTGGTTTGAGGTGCAGGTGAATGGCGTCCTGGTGCACTCGAAGAAGAATGGGGACGGCTTTGTGGACAACGATCAGAAGCTTGCCAGGATTGTGAGAGCCATTGAGAAAGCCTTAGGCAAATGAAGTCGCGCTGATGTTGGAGTTTGTTCGTCTCTGTTTGTTGACCTCTCTGAAAGCGCAACAATGATGGTGACCTCCGAAGTGCCTTTGGCACGGACGTTACTTGATGCTTTCCCGCTCTTTCATGGAGGAGGCTTTCCGAGTGGGCAAACTCCAGAAGCCGGTTTTTATGTAATGCTAAGAGAATTGAAACAGGCAAATATTATGACCTATGTATTTGCTTCTAAGCTTTCTTGCGTTGTGTTGAAAATGCACTAATTGGAAGATTTGAACATTCGtgataataaaaagaaaacaaatacagaaaacgtctctgttttttttttttgtcattataaaAC
>TU458487
GCCTCTCGGACTATAAGCGAGGAAATACCTCCGAAACACTTCAGTCCTGCCTCTAAACCCAGAGCTGGCTACCTCCCTAAACCTTCTGCCTGCAGTCAGTGCTTAATCCAGACAAGAGCCTCTACAACCGCCGAAATGGGGGTCAAAATACATGTCATTTACTGtgGTGCATGAGGGTACAGGCCCAAGttCACCAAACTCAAGACGTTGCTTGAGGATGAATTTCCAGGCGACCTTGAGATTACAAGCGAGGGCACTCCCACAACAACTGGCTGGTTTGAGGTGCAGGTGAATGGCGTCCTGGTGCACTCGAAGAAGAATGGGGACGGCTTTGTGGACAACGATCAGAAGCTTGCCAGGATTGTGAGAGCCATTGAGAAAGCCTTAGGCAAATGAAGTCGCGCTGATGTTGGAGTTTGTTCGTCTCTGTTTGTTGACCTCTCTGAAAGCGCAACAATGATGGTGACCTCCGAAGTGCCTTTGGCACGGACGTTACTTGATGCTTTCCCGCTCTTTCATGGAGGAGGCTTTCCGAGTGGGCAAACTCCAGAAGCCGGTTTTTATGTAATGCTAAGAGAATTGAAACAGGCAAATATTATGACCTATGTATTTGCTTCTAAGCTTTCTTGCGTTGTGTTGAAAATGCACTAATTGGAAGATTTGAACATTCGtgataataaaaagaaaacaaatccaaaaaaaaaaaaaaaaa
>XM_026921587.2
CTATTTGCTCCGCCTCGCCTCTCGGACTATAAGCGAGGAAATACCTCCGAAACACTTCAGTCCTGCCTCTAAACCCAGAGCTGGCTACCTCCCTAAACCTTCTGCCTGCAGTCAGTGCTTAATCCAGACAAGAGCCTCTACAACCGCCGAAATGGGGGTCAAAATACATGTCATTTACTGtgGTGCATGAGGGTACAGGCCCAAGttCACCAAACTCAAGACGTTGCTTGAGGATGAATTTCCAGGCGACCTTGAGATTACAAGCGAGGGCACTCCCACAACAACTGGCTGGTTTGAGGTGCAGGTGAATGGCGTCCTGGTGCACTCGAAGAAGAATGGGGACGGCTTTGTGGACAACGATCAGAAGCTTGCCAGGATTGTGAGAGCCATTGAGAAAGCCTTAGGCAAATGAAGTCGCGCTGATGTTGGAGTTTGTTCGTCTCTGTTTGTTGACCTCTCTGAAAGCGCAACAATGATGGTGACCTCCGAAGTGCCTTTGGCACGGACGTTACTTGATGCTTTCCCGCTCTTTCATGGAGGAGGCTTTCCGAGTGGGCAAACTCCAGAAGCCGGTTTTTATGTAATGCTAAGAGAATTGAAACAGGCAAATATTATGACCTATGTATTTGCTTCTAAGCTTTCTTGCGTTGTGTTGAAAATGCACTAATTGGAAGATTTGAACATTCGtgataataaaaagaaaacaaat

Function

NR:

description
selenoprotein W-like

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0005737 cytoplasm cellular_component
GO:0008430 selenium binding molecular_function
GO:0016209 antioxidant activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU458486 True 734 lncRNA 0.46 6 13675983 13680509
TU458487 False 712 lncRNA 0.46 7 13616122 13680509
XM_026921587.2 False 709 mRNA 0.47 6 13676024 13680525

Neighbor

gene id symbol gene type direction distance location
pho NA coding downstream 99542 13506512 ~ 13516580 (-)
aspa aspa coding downstream 112130 13484582 ~ 13503992 (-)
abr abr,si:ch211-253h3.1,LOC103375456,LOC107731041,LOC107688618,LOC107712163 coding downstream 138897 13325782 ~ 13477225 (-)
nanos2 NA coding downstream 293661 13321245 ~ 13322461 (-)
zswim7 zswim7,LOC107712139,LOC107688637,LOC107665024,LOC107740465 coding downstream 295779 13286852 ~ 13320343 (-)
ehd2a LOC108260244,LOC108427007,LOC107712157 coding upstream 2825 13683350 ~ 13695503 (-)
si:dkeyp-117b8.4 LOC108259900,LOC108428299,LOC103043164 coding upstream 22976 13703501 ~ 13707400 (-)
rsph4a rsph6a coding upstream 33151 13713676 ~ 13718102 (-)
sympk sympk,LOC107681888,LOC107685698 coding upstream 38820 13719345 ~ 13729472 (-)
hnrnpul1l LOC108259896,LOC107595510,LOC105027039 coding upstream 50684 13731209 ~ 13744359 (-)
G386763 NA non-coding downstream 92800 13523086 ~ 13523322 (-)
G386730 NA non-coding downstream 266919 13327325 ~ 13349203 (-)
G386705 NA non-coding downstream 293130 13293523 ~ 13322992 (-)
G386644 NA non-coding downstream 408048 13207399 ~ 13208074 (-)
G386632 NA non-coding downstream 421129 13194788 ~ 13194993 (-)
G386845 pex12,LOC107587685,LOC107681885,LOC107710733 non-coding upstream 129076 13809601 ~ 13827854 (-)
G386849 NA non-coding upstream 173312 13853837 ~ 13854055 (-)
LOC117596230 NA non-coding upstream 195492 13876017 ~ 13876806 (-)
G386868 NA non-coding upstream 230737 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding upstream 234839 13915364 ~ 13915497 (-)
garnl3 garnl3,LOC107700942 other downstream 724827 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 1917578 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 1988436 11546309 ~ 11627686 (-)
G384960 NA other downstream 2532181 11078712 ~ 11083941 (-)
G384811 NA other downstream 3009850 10605990 ~ 10606272 (-)
ccdc84 ccdc84 other upstream 1236137 14916662 ~ 14923390 (-)
nrgna NA other upstream 1338368 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 2201813 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 2682969 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 3077715 16758240 ~ 16763476 (-)

Expression


Co-expression Network