si:dkeyp-117b8.4 (LOC108259900,LOC108428299,LOC103043164)


Basic Information

Item Value
gene id si:dkeyp-117b8.4
gene name LOC108259900,LOC108428299,LOC103043164
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13703501 ~ 13707400 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922152.2
CCCCTATCAACAACCGCGGGAAGTATTTCCAGTGTAGAGGTCGCAAAATGTGAAAGGAGGCCGTTTTGGAATTCTAAGATGTTGTAAACTTCACACTTTAgcaaaccaaaacaaaagccAGACGCATGGAGTTCCCGGGTCGAAGGCGGCCTGGAAGTCTCGGCACTCCGACTCTGAGGAGAAGAATGGATCGCATGTTACCTTTCTCAGAACGTCGCACATCCAAAGTGTGGGACCACTACACCCAGCTTAGTATGCATCGAGTTGAATGTAACCACTGCAAGAGGCAGCTGTCCTTTCACAACAGCACCACCTCGATGAGAGAGCACTTGGGACGAAAGCACAGCATTCGCGACGGAGCAGTCCCACCTCCCAACACAGCCGATGTCCCAAACCCCTCAGCATTACGTCAACACATGGCTGCATCCACTTTACTTAATGGCAGATTCCCACCATCTAATGCGTCAGTGGATGTGCCAACAGGGTCATTTCAGCCGGTAGTACCTGTTATTGTCAAAGAGGAGCAGCATGAAGAACTATCAGCCGAGGCAGGTGAGGCCAAACATACCTGCACTACATTTGTCCCTGGTTCTGCAGGAGGAGTTGGCACTTCAAATGCTAATTCCATTCCCAGCCAGGATATAGAACCAACTTACAGATTTTCCCCAGATGAGCTTAACACCACGCTCAACAACAGTGGTGGCAGCAACACTAGTGGTGCCAGGGGTTGCAGTGATAAGCGGGCAGGACTCTTCACAGATCTTATCTTGGAGATGGTGTATAGAGATCTGCAACCTTTCTCAGTGGTGGAAGACAGGGGATTCAGACTCTTGCTTAGTTGCCTTGAACCAAGTTATCCCATTCCATCACCTTCTTTGCTTGGGAACCTTCTGTGGCATCGCTACCACATTCTCAAGCAATGCCTTCAGCAGCATCTTCAAACTGGCCTTGCTCCCCGCTGTCTGGCCATTTGCACTGAACACTGGCGATCTGTGGAAGGATGTGGGGTTGAAGGAAGTGGCCAGTTCTACCTCACTGTCAGTGCACATTTTGTTGACTCTAACTGGCAACTGGCCCGCTGTGTTTTAGATACTCGTCTAATACCAGAATACAAAGGCAACAGCCCCAGCAGTGGGCCTGCCAAGTTTGCATACACATTAAAAGCAGTTCTGTCAGAATTCCACCTTCCTGAGAGTTATGTGTTCTGCGTTGTTTATGACACTCCCTGGGGTATGGAGTGCAGGAGGCAGGGAAGCATGACACTTGATCAGGACTATCAACAGGAATTTCCTGGTCCCAGTCATGCTCCCATGCAGTCCCTTCCAGAGGGCTGGGAACCACTTCTCTGTGCAGGGGAGGCTCTCAAAATCTGCGTCCAGGAGGGACTTTATGTAGAGACTGTCAGACAGGCACTTGCGGATGCTCGTGGGATCGTCCGACACTTCCAGCATGATGTTAATGCTGCAGCAGCTCTAAATCAAAAAACAGAGGCTGCCAACAAAGGTGCAGCACGGCTGGTCCTGGATGACCCAGGCCGCTGGGCCACAGCCATTGATATGTGTGAAAGACTGCTGGAGCTTAAATGGGTGGTTAGCTCAGTGCTGGAAGAGCAAAAGGCTGCACCTAATTTGGCTGACCATCAGTGGCGTTTATTACATGAATTGGTGCCGGTGCTAAGAACTGTGCGCATTGCAGCATCCTTCCTGAGTGAAGATATCAATGCTTCTATTTCTTCCTTGATGCCATGCCTCCAAGGTGTGTCTCGAATCCTGGGGCAGAACATGGCTGAGTGCAGCTGCCCCGTGGTCAGGGGAGTGATGGAAAGGATCCGCACTGGGATGGAGAAGCGCTGGAGATTGACTGACGAGGAATCTTTGCTTGACAGTCCTGCTGTCCTGTCATCATTCCTGGACCCAAGATTCAAGGAGATGCGATTTCTCAGCCCACATGCCCGCAGCAAGCTGCATGACAAGGTCAAAGAGCTGTTATCCGTTCAGGCTTACACAGATGATAGAGAAGTGGACCAAGATATAGACAGGGGCTTggaagtgagagagaatgagacaggagGGGAACCTGCTGTTTTGGGATTGGATGACCAATTGCCTATTCCCACAGTGGCATCATTGGATTCCCCTGAGTCCTGTGCCTCATGTGCGGAGGAGGGTGACAGCATTGAACTTCAGCAGAATGAGAATTTCGTAGCTGTCTCATCTCCAGAACacattaatgaaaatattattgtgGGTTCACCTTCCAAAGCTACGGGTGGACGTAAAAGAGCAGCTAACATAGCTGGACTGTCATCTCCACTGACATGTGATCGGCAGCTCACTGCCCGAATGCGAATAAGCCCTGTCCCTCAAAGTATGTACGACATTCTTCTAGGAGAGGATCCTACTGAACGAATGCCCGAAATCCAGCAGCAGCTGGAGAATTACATAGCAGAGCCGCTGTGCAAACGTAGCCTCTCGCCTCTTCACTGGTGGCGTAACAAAGAGCACCGCTTTCCTGCAGTGGCCCGACTTGCACGAAAATATCTTTCAATCCCAGCTACTGCTATTCCTGCTGATCGTGCTTTTGCACCGAGAGAATCACCTGTGGCCCACAGGAGAGCCATGCTAGGGCCCAAACATCTTGACCAAGTATTGTTTCTTCATCAGAACTGTGATTATATAGAGCAGCTTAAGGGTGGTCTTTCAGGACATCGGGAGAGTGACCATAACAGTAATCTGAGTGGGAACCAAAGTAGAGACAGTCTGTATCAGACTTTAGTGTCCTATGATAATAAGGTTTAGTGAAAAAGGGCTGTGATTACTGTTTATGGACACAAGGCTCTTATGCACTCTCTAAGTACTcgaatgtataaaatgtattgaaCTCAATACTTTcacaatctttatttttaacaagtaTAAAAATAAGCTCCTTGGGTTTTGTCATTGTAAAAAACATAATTAGTCAATAAGGATTGACTATTTTTGACAGATTAACAGTTGCGCAGCTActaaaagttttatttacaaTGACCACAAAAATTGTCATCACACATTTGAAATAATGCTGATTCCTATTCCGTGGAAGGAAATTATTACACtacttttttttagtgtttggaCTCTGGGAGTTCTGGAGAATGGTATGATTATTGTCTTGTAACTCTGGCGTATTCATCGGTATGCTAAATTTTATGTGCCTGCTCAATACTTCGTAAGTGATATGTGTTCAGTTACAAGGTACAGTCCTAAATGTacctttaattaaaatgatcatttctcAAGCTTTGAATATGTGATTACAAAAAACAGTATTGCCAAGTTCATGCATGCATTTCAACAGTTATTGTTTATTCCATGTACAAAATGACATGTTTTGTAACTTGTGACATTGAGTATTGGTTATCTTCCCTAAATGTAACAGCTGATTAAGATGTAATCCATGAACTGCATGTCAAATTAAAGCTTGTATGAAACAG

Function

NR:

description
zinc finger BED domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922152.2 True 3475 mRNA 0.46 2 13703501 13707400

Neighbor

gene id symbol gene type direction distance location
ehd2a LOC108260244,LOC108427007,LOC107712157 coding downstream 7998 13683350 ~ 13695503 (-)
akap10 akap10 coding downstream 29883 13655790 ~ 13673618 (-)
LOC113531016 LOC108260420,LOC108427286,LOC106567973,LOC103045102,LOC107712159,LOC106534416 coding downstream 50546 13531313 ~ 13652955 (-)
pho NA coding downstream 186921 13506512 ~ 13516580 (-)
aspa aspa coding downstream 199509 13484582 ~ 13503992 (-)
rsph4a rsph6a coding upstream 6276 13713676 ~ 13718102 (-)
sympk sympk,LOC107681888,LOC107685698 coding upstream 11945 13719345 ~ 13729472 (-)
hnrnpul1l LOC108259896,LOC107595510,LOC105027039 coding upstream 23809 13731209 ~ 13744359 (-)
LOC113531537 rasl10b,LOC107685904,LOC107595522,LOC107681887,LOC107710719,LOC107587740 coding upstream 58776 13766176 ~ 13776038 (-)
ap2b1 ap2b1,LOC107681897,LOC101171688 coding upstream 71136 13778536 ~ 13813583 (-)
G386814 NA non-coding downstream 31361 13671223 ~ 13672140 (-)
G386763 NA non-coding downstream 180179 13523086 ~ 13523322 (-)
G386730 NA non-coding downstream 354298 13327325 ~ 13349203 (-)
G386705 NA non-coding downstream 380509 13293523 ~ 13322992 (-)
G386644 NA non-coding downstream 495427 13207399 ~ 13208074 (-)
G386845 pex12,LOC107587685,LOC107681885,LOC107710733 non-coding upstream 102201 13809601 ~ 13827854 (-)
G386849 NA non-coding upstream 146437 13853837 ~ 13854055 (-)
LOC117596230 NA non-coding upstream 168617 13876017 ~ 13876806 (-)
G386868 NA non-coding upstream 203862 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding upstream 207964 13915364 ~ 13915497 (-)
selenow1 LOC103044489 other downstream 22976 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 812206 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 2004957 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 2075815 11546309 ~ 11627686 (-)
G384960 NA other downstream 2619560 11078712 ~ 11083941 (-)
ccdc84 ccdc84 other upstream 1209262 14916662 ~ 14923390 (-)
nrgna NA other upstream 1311493 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 2174938 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 2656094 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 3050840 16758240 ~ 16763476 (-)

Expression


Co-expression Network