RNA id: XM_026922152.2


Basic Information

Item Value
RNA id XM_026922152.2
length 3475
RNA type mRNA
GC content 0.46
exon number 2
gene id si:dkeyp-117b8.4
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13703501 ~ 13707400 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCTATCAACAACCGCGGGAAGTATTTCCAGTGTAGAGGTCGCAAAATGTGAAAGGAGGCCGTTTTGGAATTCTAAGATGTTGTAAACTTCACACTTTAgcaaaccaaaacaaaagccAGACGCATGGAGTTCCCGGGTCGAAGGCGGCCTGGAAGTCTCGGCACTCCGACTCTGAGGAGAAGAATGGATCGCATGTTACCTTTCTCAGAACGTCGCACATCCAAAGTGTGGGACCACTACACCCAGCTTAGTATGCATCGAGTTGAATGTAACCACTGCAAGAGGCAGCTGTCCTTTCACAACAGCACCACCTCGATGAGAGAGCACTTGGGACGAAAGCACAGCATTCGCGACGGAGCAGTCCCACCTCCCAACACAGCCGATGTCCCAAACCCCTCAGCATTACGTCAACACATGGCTGCATCCACTTTACTTAATGGCAGATTCCCACCATCTAATGCGTCAGTGGATGTGCCAACAGGGTCATTTCAGCCGGTAGTACCTGTTATTGTCAAAGAGGAGCAGCATGAAGAACTATCAGCCGAGGCAGGTGAGGCCAAACATACCTGCACTACATTTGTCCCTGGTTCTGCAGGAGGAGTTGGCACTTCAAATGCTAATTCCATTCCCAGCCAGGATATAGAACCAACTTACAGATTTTCCCCAGATGAGCTTAACACCACGCTCAACAACAGTGGTGGCAGCAACACTAGTGGTGCCAGGGGTTGCAGTGATAAGCGGGCAGGACTCTTCACAGATCTTATCTTGGAGATGGTGTATAGAGATCTGCAACCTTTCTCAGTGGTGGAAGACAGGGGATTCAGACTCTTGCTTAGTTGCCTTGAACCAAGTTATCCCATTCCATCACCTTCTTTGCTTGGGAACCTTCTGTGGCATCGCTACCACATTCTCAAGCAATGCCTTCAGCAGCATCTTCAAACTGGCCTTGCTCCCCGCTGTCTGGCCATTTGCACTGAACACTGGCGATCTGTGGAAGGATGTGGGGTTGAAGGAAGTGGCCAGTTCTACCTCACTGTCAGTGCACATTTTGTTGACTCTAACTGGCAACTGGCCCGCTGTGTTTTAGATACTCGTCTAATACCAGAATACAAAGGCAACAGCCCCAGCAGTGGGCCTGCCAAGTTTGCATACACATTAAAAGCAGTTCTGTCAGAATTCCACCTTCCTGAGAGTTATGTGTTCTGCGTTGTTTATGACACTCCCTGGGGTATGGAGTGCAGGAGGCAGGGAAGCATGACACTTGATCAGGACTATCAACAGGAATTTCCTGGTCCCAGTCATGCTCCCATGCAGTCCCTTCCAGAGGGCTGGGAACCACTTCTCTGTGCAGGGGAGGCTCTCAAAATCTGCGTCCAGGAGGGACTTTATGTAGAGACTGTCAGACAGGCACTTGCGGATGCTCGTGGGATCGTCCGACACTTCCAGCATGATGTTAATGCTGCAGCAGCTCTAAATCAAAAAACAGAGGCTGCCAACAAAGGTGCAGCACGGCTGGTCCTGGATGACCCAGGCCGCTGGGCCACAGCCATTGATATGTGTGAAAGACTGCTGGAGCTTAAATGGGTGGTTAGCTCAGTGCTGGAAGAGCAAAAGGCTGCACCTAATTTGGCTGACCATCAGTGGCGTTTATTACATGAATTGGTGCCGGTGCTAAGAACTGTGCGCATTGCAGCATCCTTCCTGAGTGAAGATATCAATGCTTCTATTTCTTCCTTGATGCCATGCCTCCAAGGTGTGTCTCGAATCCTGGGGCAGAACATGGCTGAGTGCAGCTGCCCCGTGGTCAGGGGAGTGATGGAAAGGATCCGCACTGGGATGGAGAAGCGCTGGAGATTGACTGACGAGGAATCTTTGCTTGACAGTCCTGCTGTCCTGTCATCATTCCTGGACCCAAGATTCAAGGAGATGCGATTTCTCAGCCCACATGCCCGCAGCAAGCTGCATGACAAGGTCAAAGAGCTGTTATCCGTTCAGGCTTACACAGATGATAGAGAAGTGGACCAAGATATAGACAGGGGCTTggaagtgagagagaatgagacaggagGGGAACCTGCTGTTTTGGGATTGGATGACCAATTGCCTATTCCCACAGTGGCATCATTGGATTCCCCTGAGTCCTGTGCCTCATGTGCGGAGGAGGGTGACAGCATTGAACTTCAGCAGAATGAGAATTTCGTAGCTGTCTCATCTCCAGAACacattaatgaaaatattattgtgGGTTCACCTTCCAAAGCTACGGGTGGACGTAAAAGAGCAGCTAACATAGCTGGACTGTCATCTCCACTGACATGTGATCGGCAGCTCACTGCCCGAATGCGAATAAGCCCTGTCCCTCAAAGTATGTACGACATTCTTCTAGGAGAGGATCCTACTGAACGAATGCCCGAAATCCAGCAGCAGCTGGAGAATTACATAGCAGAGCCGCTGTGCAAACGTAGCCTCTCGCCTCTTCACTGGTGGCGTAACAAAGAGCACCGCTTTCCTGCAGTGGCCCGACTTGCACGAAAATATCTTTCAATCCCAGCTACTGCTATTCCTGCTGATCGTGCTTTTGCACCGAGAGAATCACCTGTGGCCCACAGGAGAGCCATGCTAGGGCCCAAACATCTTGACCAAGTATTGTTTCTTCATCAGAACTGTGATTATATAGAGCAGCTTAAGGGTGGTCTTTCAGGACATCGGGAGAGTGACCATAACAGTAATCTGAGTGGGAACCAAAGTAGAGACAGTCTGTATCAGACTTTAGTGTCCTATGATAATAAGGTTTAGTGAAAAAGGGCTGTGATTACTGTTTATGGACACAAGGCTCTTATGCACTCTCTAAGTACTcgaatgtataaaatgtattgaaCTCAATACTTTcacaatctttatttttaacaagtaTAAAAATAAGCTCCTTGGGTTTTGTCATTGTAAAAAACATAATTAGTCAATAAGGATTGACTATTTTTGACAGATTAACAGTTGCGCAGCTActaaaagttttatttacaaTGACCACAAAAATTGTCATCACACATTTGAAATAATGCTGATTCCTATTCCGTGGAAGGAAATTATTACACtacttttttttagtgtttggaCTCTGGGAGTTCTGGAGAATGGTATGATTATTGTCTTGTAACTCTGGCGTATTCATCGGTATGCTAAATTTTATGTGCCTGCTCAATACTTCGTAAGTGATATGTGTTCAGTTACAAGGTACAGTCCTAAATGTacctttaattaaaatgatcatttctcAAGCTTTGAATATGTGATTACAAAAAACAGTATTGCCAAGTTCATGCATGCATTTCAACAGTTATTGTTTATTCCATGTACAAAATGACATGTTTTGTAACTTGTGACATTGAGTATTGGTTATCTTCCCTAAATGTAACAGCTGATTAAGATGTAATCCATGAACTGCATGTCAAATTAAAGCTTGTATGAAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458487 lncRNA downstream 22992 13616122 ~ 13680509 (-) False selenow1
TU458486 lncRNA downstream 22992 13675983 ~ 13680509 (-) True selenow1
TU458494 lncRNA downstream 31361 13671223 ~ 13672140 (-) True G386814
TU458441 lncRNA downstream 180179 13523086 ~ 13523322 (-) True G386763
TU458402 lncRNA downstream 354298 13327325 ~ 13349203 (-) True G386730
TU458536 lncRNA upstream 102201 13809601 ~ 13827854 (-) True G386845
TU458541 lncRNA upstream 146437 13853837 ~ 13854055 (-) True G386849
XR_004577399.1 lncRNA upstream 168617 13876017 ~ 13876806 (-) True LOC117596230
TU458563 lncRNA upstream 203862 13911262 ~ 13916801 (-) True G386868
TU458564 lncRNA upstream 203862 13911262 ~ 13916801 (-) False G386868
XM_026922154.2 mRNA downstream 7998 13683350 ~ 13695503 (-) False ehd2a
XM_026922153.2 mRNA downstream 7999 13683350 ~ 13695502 (-) True ehd2a
XM_026922155.2 mRNA downstream 8016 13683350 ~ 13695485 (-) False ehd2a
XM_034300596.1 mRNA downstream 8056 13683350 ~ 13695445 (-) False ehd2a
XM_026921587.2 mRNA downstream 22976 13676024 ~ 13680525 (-) False selenow1
XM_026922328.2 mRNA upstream 6276 13713676 ~ 13718102 (-) False rsph4a
XM_026922327.2 mRNA upstream 6276 13713676 ~ 13718102 (-) True rsph4a
XM_026922471.2 mRNA upstream 11945 13719345 ~ 13729472 (-) True sympk
XM_034300473.1 mRNA upstream 23809 13731209 ~ 13744359 (-) True hnrnpul1l
XM_026922321.2 mRNA upstream 58776 13766176 ~ 13776038 (-) True LOC113531537
XR_003403212.2 other downstream 2004957 11691234 ~ 11698544 (-) False LOC113531030
XR_004577405.1 other downstream 2075919 11621662 ~ 11627582 (-) False map1b
XR_004577404.1 other downstream 2075979 11621662 ~ 11627522 (-) False map1b
TU456386 other downstream 2619560 11078712 ~ 11083941 (-) True G384960
TU456221 other downstream 3097229 10605990 ~ 10606272 (-) True G384811
XR_003403280.1 other upstream 105833 13813233 ~ 13813329 (-) True LOC113531678
XR_003403286.1 other upstream 207964 13915364 ~ 13915497 (-) True LOC113531684
TU459046 other upstream 1209262 14916662 ~ 14923384 (-) True ccdc84
XR_003403223.2 other upstream 2670185 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 2723992 16431392 ~ 16431464 (-) True trnam-cau_50

Expression Profile