RNA id: XM_026922154.2


Basic Information

Item Value
RNA id XM_026922154.2
length 2368
RNA type mRNA
GC content 0.49
exon number 8
gene id ehd2a
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13683350 ~ 13695503 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCGAGCGCCATTTACTATTTTAGTCCTACTCTTTTGCTATGTTTAGGACAGAAGTGCGTTTTTCAGTGCTTGGAAACgatgattaaatataaatccCAGCACAACTAGGGTTTCAAAAAAAGAGCTTGTGAATGGTCCAACACCCCACCCAGCAGAAACATCTGGAGCTGAGCACACACCAGAAACCTCCAAGTCTCTCAACCCAGATCATACCAGGACCAAAGGATAAATCAGAGAGACTGTTTTCACTCTCATTTATGATATCTGCagcaagaaaaatgtaaaagtgaGTGAGATTCAAGTCTAGACAGAGGACAGTTGGTAAAATTGTGCCAAAGGTTGCAGAGAAGAAGGAACTTACTGGATCGAGTGGAGCATCGCAGACTCAGTTTTCAAACCTGCCTTAAAGAGATTTACAGACTCCGTTTCTTGTTCAATGGCTTCCAAAGAAGTTAAGAACAGGGGCGTGAAATCTCTCAAGGAAGTCCAGACAGTCACTGAGGGTTTGAAGTTTCTCTACCGACAGAAGCTGCTTCCTCTGGAGAAGTATTACAGCTTCTCAGACTTTCACTCTCCCAGTCTGGAAGATGCAGACTTTGACAACAAGCCCATGATCCTGGTGGTGGGCCAGTGTTCAACGGGGAAGACGACCTTCATTAGGTATCTTCTTGAACAAGACTACCCAGGAGGTAGAACTGGGCCTGAACCTACAACCGACTGTTTCACTGCTATCATGCATCGGGATGTTGAGGGGGTGATCCCAGGCAATGCTCTTGTTATGGACCCCAACAAACCTTTCCGCAAGCTCAACTATTTTGGCAACACCTTCCTCAACCGGTTCCAGTGTGTGCACTTTCCAAACCAAGTCTTGGAAAGCCTCAGCATCATTGACACACCAGGAATTTTGTCCAGCGCTAAGAAAAGGATGAGCAGAGGCTATGATTTCCCAGCAGTCCTCCGCTGGTTCGCTGAGCATGTGGATCTCATCATCCTCCTGTGCGATGCCCACAAACTGGAGCTCTCGGACGAGTTCTCTCGCTCCATCGTGGCCCTACGAGGACATGAAGACAAGCTGCGCGTGCTGCTCAACAAGGCCGACATGGTGGACTCGCAGCAGCTGATGCGGGTTTACGGTGCACTGATGTGGTCGCTGGGCAAAGTGATTTGCACCCCGGAAGTCCTGAGGGTCTACATCGGCTCCTTTTGGTCCTCTCCGTTCAGGACGTCAGAGAACCGTGTGCTGTTTGAGCGAGAGGAAGAAGATCTCTTTAAGGAGATCCAGAACTTGCCTCGCAACTCTGCCCTGAGAAAACTTAATGACCTGGTAAAGAGGGCACGACTTGTGAGgACCCATGCTTACATCGTTAGCTTTCTGAAGGTGGAAATGCCTTTGTTTCGTCGAGATAACAAAAAACGTGACCTGATTTATGACCTTCCGCTCGTTTTCTCAAGGATCCAACAGCGGCATCAGATCTCAGCTGGAGATTTTCCTGATTGCGCAAAGATGCAGGAGCGACTCATGGATCGTGACTTCACCAAGTTTAAAACCCTAAAGCCCAAACTCATAGCAGGTCTGGATGAGCTCCTGACGACCGACATCGCGAAGCTGATGCCACTTCTGCGCCAAGAGGAACTCGCAGCAGCTGAGCAGCCTGGCGTCCAAGGCGGTCCCTTACTAGGAGCAAACAGAGGCCCTTTTTTTGAAGGAAACCCGTTCTATTATTCGGGGCCCAACGGAGAGTGTGAGGAGCTCGCTGAAGAAGCTTGGGTGGTCTTTAAAGACAAGCCGAAATATGACGAGATCTTCTACAACCTGTCTCCTCAGGATGGCAAGCTCAGCGGGCTCAAAGTGAAGGACTGGATGACCAGCACTCGGCTGCCGAACTCGGTCCTGAGCCGGATTTGGAAGCTGTCGGATGTGGATGGAGACGGCATGCTAGATGATGAAGAGTTCGCTTTGGCCAGCCACCTTATTGAGGTGAAGTTAGAGGGCTTCGGGCTTCCTCCCAAGCTCCCTGCTGACCTGGTGCCGCCGTCTAAAAGAAGACGCAAAACCTCGAGGACAGAGAACAGGGAAGACCGTGGGGAGGCGTAGACGCTTGTCTGATGCTAACGATGACTGAGCAAGATTTATTCACTAAGGTTTTCTATGATTTATGCACTTAAAATCAACCCTTGTCCGTGTCTAACCTATAAAAGTTCCATTACTCCCCTTTTAGTGAAAACATGCACTGAAGTAATTACATATACCGATccgccataacattaaaccactgacaggtaaaatgaataacactaattatctcattacagtgacacctgtcaaggggtgggatatattaggcagcaagtgaacagtaaGTTCTC

Function

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458487 lncRNA downstream 2841 13616122 ~ 13680509 (-) False selenow1
TU458486 lncRNA downstream 2841 13675983 ~ 13680509 (-) True selenow1
TU458494 lncRNA downstream 11210 13671223 ~ 13672140 (-) True G386814
TU458441 lncRNA downstream 160028 13523086 ~ 13523322 (-) True G386763
TU458402 lncRNA downstream 334147 13327325 ~ 13349203 (-) True G386730
TU458536 lncRNA upstream 114098 13809601 ~ 13827854 (-) True G386845
TU458541 lncRNA upstream 158334 13853837 ~ 13854055 (-) True G386849
XR_004577399.1 lncRNA upstream 180514 13876017 ~ 13876806 (-) True LOC117596230
TU458563 lncRNA upstream 215759 13911262 ~ 13916801 (-) True G386868
TU458564 lncRNA upstream 215759 13911262 ~ 13916801 (-) False G386868
XM_026921587.2 mRNA downstream 2825 13676024 ~ 13680525 (-) False selenow1
XM_034300863.1 mRNA downstream 9732 13658883 ~ 13673618 (-) False akap10
XM_034300862.1 mRNA downstream 9736 13655790 ~ 13673614 (-) False akap10
XM_026922152.2 mRNA upstream 7998 13703501 ~ 13707400 (-) True si:dkeyp-117b8.4
XM_026922328.2 mRNA upstream 18173 13713676 ~ 13718102 (-) False rsph4a
XM_026922327.2 mRNA upstream 18173 13713676 ~ 13718102 (-) True rsph4a
XM_026922471.2 mRNA upstream 23842 13719345 ~ 13729472 (-) True sympk
XM_034300473.1 mRNA upstream 35706 13731209 ~ 13744359 (-) True hnrnpul1l
XR_003403212.2 other downstream 1984806 11691234 ~ 11698544 (-) False LOC113531030
XR_004577405.1 other downstream 2055768 11621662 ~ 11627582 (-) False map1b
XR_004577404.1 other downstream 2055828 11621662 ~ 11627522 (-) False map1b
TU456386 other downstream 2599409 11078712 ~ 11083941 (-) True G384960
TU456221 other downstream 3077078 10605990 ~ 10606272 (-) True G384811
XR_003403280.1 other upstream 117730 13813233 ~ 13813329 (-) True LOC113531678
XR_003403286.1 other upstream 219861 13915364 ~ 13915497 (-) True LOC113531684
TU459046 other upstream 1221159 14916662 ~ 14923384 (-) True ccdc84
XR_003403223.2 other upstream 2682082 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 2735889 16431392 ~ 16431464 (-) True trnam-cau_50

Expression Profile