RNA id: TU456386


Basic Information

Item Value
RNA id TU456386
length 5148
RNA type TUCP
GC content 0.43
exon number 2
gene id G384960
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11078712 ~ 11083941 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAACCCAAAACACATTTTAGGGTAAACGGGTCGGTTTATACAGGAAGCACTAAAAAGACAAGGTACATACCAGCCATATAGGTGCCTCACAGTAAATTGAATTAATCAGTCTCATGAAATAtcccatttttatttagaaattaaaattacaacTGTCAAATAAGTCAAAGTTATTAAAACCCCAGTTTTAGCGGAGAGCTATAATAATCAATGACCTGGTTTCTGAAGGCTTAGTTCTGAAAAGTCTGACTTCTTGCAATATCAGAGTAATAACAACGAAGCAATAAAATGCAAGTGTCTGTAGATGTGTGCTCTGCTTTAGAGCTCAGTCGCGCTGAGCTTATGAAGATGAATAACCATGTGAGATATGTGGCCACACCTCCTGGAATGTGAAACAAAGagaacaacagagagaaaactGGTGGGGATTTCAATGTCTCCACATGTGGTAGATGACCAGcgatagaaaatataaatatatttttgatgaCAAAAGTTCCAAAGCGCAATGGAAGCGTAATGGGAATAACGTTACAGagtttggtttttatttttcctcagtaAACGGAGATAACTGACTGAGTGACCATGTTAGTAAGCACAGAGTAACAGAAATGTTATGCATGGACAGATTTCCCTGTTGGTGTTAGAAGGGTTACATGTGTCTGCACACATGGGCGGAGGTTATACAAGAAgagaatcttaaaaaaaaatttaacttctTCAAGGCCTGGTCTATACCTTCCTTGGAAATATGTGTGCCTTAAGGGATTATAAAACTTTTAAGAGTGCTTATTGTGACCATGTTTGATGTTCATTGCAGATATCATGGCgaaagtttaattaataaaggATGAAGTTTCTTCTGGCAAATGTGTCACTAAACTAGCTAAAGGTTTTGCAGTGTCTTTAGAAATGCATGGACTGTTCTGGAAGTTGTTTTCCAGATAAGCTTGAACTTCTTTCATTGAGTAGAGTAACTTTGCAGACTTTTTGAGCCTGGTGATAGGcataagattcaagattcaaagaactttattaatcccagggggaaattgctttgccatgttacaattgctctcaaaaagaaagaaagaaagaaagaaaaagaaaataaatatatacccattttataaatatacatactaaatttgtattgcacatgaaagtcccttattgcacatgaattgaACATGTATTGCATATGCATTACACATGAAAGTCCTAGCACTTATAGAGAGGAGTTGTACAGCTTGATGGCCACAGGGATAAAGGATCTTCTGAAGCGCTCAGTGGAACACTTGGCAGTGATCAGTCTCTGGCTGAAAGTGCTCCTCTGGTCGACCAGCACACTGTGTAGCAGGTGAGAAGGTTTGTCCAGGATTGAGTGGAGTTTTGACAACATCCTTCTCTTCGCCACAACGTGAACAGGGTCCAGCTCCATGCCACGTACAGATCCAGCCCTCCTGATTGGTTTGTCCAGTTTGTTTCTGTCTGCCACCTTCATACATTGAAAGACCTGAGCCTCCTCAGAAAATACAGCCTGCTCTGGCCTTTCTTGAAGAGTGCTGTTGAGTTTGATGTCCAGTCCAGTTTGTTGTCTATATGGACTCCCAGGTATTTGTAATCTGCAACAATCTCAACTTCCTTACCATGGACAGACAAAGGAGTGACGGGGGTCCTGGATTTTCTAAAGTCCACTACAAGTTCCTTTGTTTTCCTGACATTGAGCTGTAGGTGATTGAGCTCACACCAGGTAACAAAGTTGTCCACTACCATCTGATATTCTGAGGTGTCACCACCCTGAATACATCCAACAATCACAGAGTCATCAGAGAACTTCTGAAGGTGGCAGGATTGAGAGTTGTAACTAAAATCAGATGTATATAGGGTAAAGAGGAAGGGAGAAAGAACTGTCCCTTGAGGAGCACCGGTGCTGCAGATCACAGTGTCGGACACAGTTCTGTATGCGGACGTACTGGGGGCGGCCAGTGAGGTAGTCCATAATCCAAGAGACCAAAGGAGTGTACACCTGCATGTTCTTCAACTTCTCCTCCAGTAGGGTGGGCCTGATGGTGTTAAAGGCACTAGAGAAGTCAAAAAACATAAACCGCACAGAGCTCCCCGATTTCTCTAGGTGAGTATAGGTTCGATGGAGCAGGTGGACGATGGCATCATCCACTCCAAGTTGAGGCTGGTAGGCAAACTGTAATGGATCAAGGAAGGGTTTGACAAGGGGCCGAATGGATCTGAGGATCAGTCTCTCGAAAGCTTTCATTAGGTGAGAGGTCAGCGCTACTGGCCTGTAGTCACTGGGGACACAGGGCCGTGCTACTTTTGGTACCGGCACTAAGCAGGATGTTTTCCATAGCACCGGGACCCTCTCCAGATGTAGGCTCAGGTTAAAGATGTATTGTAGCACACCACAAAGTTGCGGGGCACAGGCTTTTAGTATTCTTGAGCTGATTCCATCAGGGCCCGCAGCCTTTGTAGGACTAAGTCTGCTCAATTCCCTTCTTACTTGATCCTCTGAGATGGTAATGGTTCCAGAGGAATCTGGCGTAGTGGCCCTGTTAGTGATCCCTCTTAGCGTCCTCCCTATCACCAGCCCTAAAAGCCCTCTTTTTATCATTGAGAGCAGCTTTAATGTCCTTGGTGACCCAGGGTTTATTGTTAGGGAAGCAATGAATAGTTTCCAGGGGCATGCAGATGTCAACACAGAAATTGATATATTCCGTGATGCAGTCAGTCAGTTGGTCAATATCCTCACCCTGTGGCTCACAGAGCACCTCCCAGTTTGTAGACTCAAAGCACTCCTGCAGGGCAGCATTGGCTTCTTCAGACCATTTCCTCACCTTCCTGACAGTAGCAGATTGCCACTGAACCAGAGGTTTGTATGTTGGAAGGAGATGGATCAGGTTGTGATCTGACCTGCCTAGCGGGGGGAGGGCTGAAGAGCTGTAGGCCCCTTTAACATTTGAATACATCAAGTCTGGGGTCTTGACACCTCTGGTGTGACAATCCACATACTGAGTGAAGGTGGGAAGAGTTTTCGTGAGGGATGCTTGATTGAAGTCGCCAGAGATGAGGTACAAGGCATCGGGGTGGCGGGTCTGAAGTTTGGCAGTGACTGAGTGTATGAGATCACATGCGCCCGCAGCATTAGCGGATGGAGGAATGTAGACGGCTATTAAAATGGCGTGAGAGAACTCTCTGGGCATGTAGTATGGGCGAAGCTCCACAGCCAAAAGTTCAATATCGGGGTTGCAAACACGCTCTTTCACAGTTACATGACCCAGGTGGCACCACATGTTGTTAATATAAACAGCcagtcctcctcctctcctcttacTGCACTCCTCTCGTCTCCGGGTCTCCCCGCACTGCACTGAAGCCGTCTATATTAATGCTGGAATCAGGTATGCCATCATGTAGCCAAGTCTCCGTAAAACACGTCAGACTGCATTCTCCAAAGATGTTCTCCCTTCTTACTGAAGCTGTCAGCTCGTCCATCTTATTGTCCAGTGACCTCACATTACCCATAATGAGAGATAGGAGATACGGTTTATATTTCCTCGCCTTCTCTTTGCGCGCTGCTTGGCTCTGCTCAGCTTTTCCTCTCCGCCGTTTTCTTCCACCTCTGCatcctctcactgtcctccTTCGTATCTCATCAGGGATGCCAGCCGGTTGCAATGCGATCAGCTGATCTCTGGTGTAAACAAAAGAGCCGGCACTGTGTTGCTGCGCGTCGGTCACTCGGAGAGTTGAAAACAGAAGTCCCGTTGCGAAacttaagacaaaaacaaatcgCATGATTAGAGAGGTAAAAGCTTATTACTGGTTACCAATAAAAATTTAAAcgagaaagataaagaaataatagGTAAATTACGAAAAGGAAGGGGAGCAACTGTAACAGGCTGCTGCACGCTCGCGCACACTTTGGAACATAGCTAGTCCCAATGCTAATCATAATAGTGTGATTCGCATCTGGGCCTACAGGGCAGTGAGGTGTCCTCCTCATATTGCTCATGATAAAATGTTTTGCTGCTCCGTGGAGTGAATCAAATGTGTGACAACAAGACGGTGTACATTGTAGGGCttgtagtttatttaaatatgcttCTCCTTGGTGATCAGCGAAGCGAACTCCAGATTTGCAATGTCCAGGCACCAGAGGAGTACAACCATGGAGTCTTGTTAGTCTTGTTATTGCTTGTCACTCTGCTGTACGTTCTGCATGCTCAGAGAAGGAAGACAATGTCTTAGGGGTCACTGGTAACTGTATGAGTGATTGTTCTATAATCCTTTACAACTGGGTGTGAGGCCTTACATTTGGGGATAGATAAGTTGACTTGTTACCTCAATTAGATATTAGTATGATCTAATtatttttcaggtttttgtAGGGTAAGCTAACAATTGCCTTAAAATAGTGATTATGTTGATTAGTTGGTAGAAATATATAAGGTTTTAATATACACAATTAATGATGTGTTATAAGCAAAAGTACCCTTTGCTGTCTCACTTAAACATGCTGTGAGTAAACACTAGAGCCTAGGGCTCACTAGGGCCACTAGTGCCTGGGCCCTGCTGAATTAttgaaatttgtaaatttgtagTTGTTTGATGTGTCTTAAATAGGGCTCTTCTTATGCCTAACTGGGAGTTAGCATGTGTAACGGTTCCCTGCATTGCTACTAAATTAATTCTCACTGGTTATTTAGAAATAACCTAAACTTTGTTAAAAGCTTTCAGACCCAGGACGATGAGTTGCAGCTGATTTCCCTTCCTCCACTCAGGACTGACTGTTTTTTGGACTctgattcttcttcttattgttTTGCCATCTGCATTGAGATTGGGACAAATGTTAATTTTGTCATGCAGGACACTGATTTCTAGGCTAGTCTTTCTGTAGAACAGCAAGAATATTCAACAGCATAGTGAGTGTTAATGTTTTGAGGTCCATGCTGGATGAAGgacactattttatttattttatctttgctGCCCTCTATTGAATGCCTTTATCAACTTTTTATATGACTGtgtaattaattgattaattaattaattagaatgATTGCAATATACTAATACCGCTGCAAAACTTCTGGCTATGCGGGTAGGGAATCTACTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456388 lncRNA downstream 5547 11062540 ~ 11073165 (-) True G384962
XR_003403264.2 lncRNA downstream 161449 10914139 ~ 10917263 (-) True LOC113531553
TU456353 lncRNA downstream 252758 10821637 ~ 10825954 (-) True G384928
TU456349 lncRNA downstream 258952 10785595 ~ 10819760 (-) True G384927
TU456350 lncRNA downstream 280194 10785595 ~ 10798518 (-) False G384927
XR_004577440.1 lncRNA upstream 17886 11101827 ~ 11102812 (-) True LOC117596259
TU456509 lncRNA upstream 135120 11219061 ~ 11219490 (-) True G385060
TU456511 lncRNA upstream 136015 11219956 ~ 11276974 (-) True G385061
TU456512 lncRNA upstream 189154 11273095 ~ 11276974 (-) False G385061
TU456518 lncRNA upstream 201388 11285329 ~ 11285555 (-) True G385067
XM_026922349.2 mRNA downstream 96798 10834457 ~ 10981914 (-) True mcc
XM_026922350.2 mRNA downstream 101589 10834457 ~ 10977123 (-) False mcc
XM_026922348.2 mRNA downstream 103367 10834457 ~ 10975345 (-) False mcc
XM_034300712.1 mRNA downstream 295722 10699198 ~ 10782990 (-) False coro1cb
XM_034300713.1 mRNA downstream 313601 10691244 ~ 10765111 (-) False coro1cb
XM_034300955.1 mRNA upstream 63190 11147131 ~ 11151024 (-) True LOC113523726
XM_034300936.1 mRNA upstream 271733 11355674 ~ 11452919 (-) False mvb12ba
XM_026922407.2 mRNA upstream 271733 11355674 ~ 11452919 (-) True mvb12ba
XM_034300586.1 mRNA upstream 462368 11546309 ~ 11627686 (-) False map1b
XM_026921649.2 mRNA upstream 464826 11548767 ~ 11627686 (-) True map1b
TU456221 other downstream 472440 10605990 ~ 10606272 (-) True G384811
XR_003403283.1 other downstream 1393939 9684647 ~ 9684773 (-) True LOC113531681
XR_003403281.1 other downstream 1394314 9684272 ~ 9684398 (-) True LOC113531679
XR_003403284.2 other downstream 1395607 9682981 ~ 9683105 (-) True LOC113531682
XR_003403282.1 other downstream 1395979 9682607 ~ 9682733 (-) True LOC113531680
XR_004577405.1 other upstream 537721 11621662 ~ 11627582 (-) False map1b
XR_004577404.1 other upstream 537721 11621662 ~ 11627522 (-) False map1b
XR_003403212.2 other upstream 607293 11691234 ~ 11698544 (-) False LOC113531030
XR_003403280.1 other upstream 2729292 13813233 ~ 13813329 (-) True LOC113531678
XR_003403286.1 other upstream 2831423 13915364 ~ 13915497 (-) True LOC113531684

Expression Profile