RNA id: TU456512


Basic Information

Item Value
RNA id TU456512
length 3666
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G385061
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11219956 ~ 11276974 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTATACCAGACTTTATTGGGAAAATCTACCTAAATACAGTATCTGCATAATCTAGCAAATATTGTTAATGCCATAAGACCTATTAaaattttttcatttgaaatgcAATTATGCAGCACTTTCTCCCAGGACAGGAAGGGCATTTATTAGCTGCAACTTCACAGATCACAAATGAAGGGGGAATAGCCTTGAGCAGTCAACACAAAATGGCAGTCAGAAACCTGAGGTGAAACATGAGTTTTGTAtttgaacaaaaaacaaaacaaaacaaaacaaacaaaaaaaggatcCAGTtaaacaaattgaaaaaaacacagcttttggGGTTAAGTTACATTTTGCAAGTTTGTTCCCATatttgaaataaagaaaagggcTAAGCAAAGAAAGTAACATGTACATTTAACAAacctaaaatatataatgtataatgttgtaCAAAAAGAGCATGTTATACATCctcaattttcaaaaaaaaaaaaatcaaaacaacagTCAACCCCCATTAACCGCTAAGGGCAGTGGTAATCACGTACATTCTTGACACATGACAAAATTTTCTAACAAAGTCTGGTAGTGACATCTGGTGCAGTAATTGGTTATCTTGGATTCACAAAACCATTCTATTCAGAAGCATTCTATAGGGTGTCCTAAGTCATACATAGGAGAAcactaacactttttagcaaaatgtcttccaaaaattttcatactttgtgtgtgtgtgtgtgtgcatatatatatatatttacagatagcctttaagaatgcctttgacaaaagaagaatgtattgaaatcattctcatggccagatcgggaagctgtcgcaaggttgcaatTGACTTTAACAGCAAACATGGCAAGCacctcacacactacactgggAGCCAAAGATGGGAGAGATGACTcgatgtgtgtttacaaagaaatggcaatcatgtagagaatgttttataaataaagttacattttgctaaaagtgttaatttcccctgtgtagggagacttttgggacactgtGTATTTTACCCCTTCTAACTGCCAGGGGCGGTGAGAATTACCTGGATGCTTACAATTTTATGAGGAAAAGGACAGAGGAGAGGATATGAGGAGGAGATGCATGTCACAGTGTTCACCGTGGCATGGGCTGGGTGTGCAGTCCGTCTATAGGCCATGGTGAGCCAGCCTCTGCTTAGACATGTCAGATGAACAGGTGGTCTGAGGATCGGATGCCCATCACCTGATATAAATAGTACTGCAGGGCATGCACCCAGCACAGCAAGAAACATGCCCTGCATCCCCAGTTTCAAGAAATGCTGCATTTGTCAATTGACTGATTCACAAAACTGAGTGGAAAAGAAGTAATCAAACAAAAGGTCACCCCAGAGTTATCTGGGCACCAACACGAGTGTTGCGTGTGTGAAACCTGCACTCTCATATCTCTCCTATCTCCATATTGTGTACACATGGTCCGATGTGTATGAGGcgagaagaaaaaagaggaacaaAAGCTGTATGAAAGCAGTATATATTATAGTGACACACGTCAATATGTGACTTTGTAAGAAGCTCTCGGCATCTGTGCATACACTCAACAAGGTGACTCTCATCACTCTTGGTGGCtaggaggggtgaaatagaacacagatcacagcaaaaaaataaaaaataaaaaatacatgtaataaTTTATCTGATCACGTTTGTAATTTCTGGAACCTAACAGCCacatgcattatttaaaataagtcTGGTTCagttttattgttaaaagtcACAAGCAAAaatgcctatttttttttttttaagtcccCAGAGTGCTATGtctttaatttaacattatgaGTAAGaagggtttcttttttttactgatcCTGAATATGGTTACTATTTATACTTTGGGAAAATATATGTTATTTgcaattatgttttttaaatctttactcCATCAGGAGTCCACTTGCATTCATTTGTTATACTTGTATGCAGTGGACataatacaaaaagaaaaacactaacCCTGGCACAACACGCAGCTTCCCTGGCCTTATGCTATAATGGCAAAGACTGGATGGTATCAGctaaaattgtgttttattttttcttttcacatttttgaaTGACAGTAGAGAGTATCAGTGCAGATAATGGCTAAGTCCAATATAGAGATAGACCCTGAGGAGTTGATTCAACTACACTACTATTAAGAGTCTCCCGCTCTTAATCTTAACCTCAGAACCTTAATTTCCTCAGCTTATATTAATTTGCATTCTTGTTTCCTCCTTTCCTCCCCTCAATATTATTTCATCTTCTGTCATTGTTATGATTATTGTTTTCACTTCTCTCTTGTTGTAGCTACTGTATTTCACCCTATTTCTATTTAAAGGCTTCTGTTTAACAATGATTTTttccttcaattttttttctctctgcttggTTGAGAGACACTCATCAGAGGTCTGACTATGTCCTACTGGCTTGATTTCTTGTCTTTCTGAAAGCTAAAGCTGGTACGTCGGCTGAGTTTGCGTTGCTTCTGTGCAAAATAGTCAGCTCTTGAGGTGCTGGCTCGAGACTCAAGGATGTAGTTCACCTGAGAGCCTTTAGCACGATCTCGTTGACTGTAGCAGCATCACATTCAAAGTAAAGGACCTTGTAGTCATGGTTGCTAAGATATGTGAGCTTAAATATTGCATGACCTGCAAGAACATCAAAAAATGTTGCAAAAGTTAGTCCATTACAAATTCCATTCATAATCaaggcaaggccagttctttggtttttgctatacactaaagacatttggatttgatattaaaagatgaatatgagagaacagatcagaatttcaactttcacttcctgatatttacatctagatgtattaaacaacaTAGAACATAAACACCTTGGCtgtcagaccacccaatttttaggttagcaaaagtataggaacaggcagtcttaaagtaaatgacccttaatatttggttgtgtatcccttgcttgcaataactgtgaagtgaagtgacttgtggccaagtatggtgacccatacttggaatttgtgctctgcatttaacccatccaagtgcacacacacagtagtgaacacaaacacacaccgtgaacacacacccggagcagtgggcagccttttttgctgcggcgcccggggagcagatgggggttcggtgccttgctcaagggtctgaCCTCAGTCGtgatattgagggtggaagtgtttctcccttcagtctcctcttcaggaagtGGAATGCATTCTTAATTGGGTTAATGTCTCATGAATGATTtgaccagtctaaaaccttccactttttcccctgatggaGTCCTTTGTTGtgatggcagtgtgttttgggtcattgtcttgctacATAATGAAGTTCCTTCCAATtaggtttctctgtaaattggcagacagaatgtttctatagacttctgaattcattctgctgctaccatcatgagttacctgagtaaagattagtgagcctgttccagaagcagccatgcaagcccaagccatgacactacctccaccatgatTGACCAATGatctcatatgttttggatcataagcagatcctttctttctccacattgCCATTTttatcactttggtagaggttaatcttggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456509 lncRNA downstream 53605 11219061 ~ 11219490 (-) True G385060
XR_004577440.1 lncRNA downstream 170283 11101827 ~ 11102812 (-) True LOC117596259
TU456388 lncRNA downstream 199930 11062540 ~ 11073165 (-) True G384962
XR_003403264.2 lncRNA downstream 355832 10914139 ~ 10917263 (-) True LOC113531553
TU456353 lncRNA downstream 447141 10821637 ~ 10825954 (-) True G384928
TU456518 lncRNA upstream 8355 11285329 ~ 11285555 (-) True G385067
TU456545 lncRNA upstream 84559 11361533 ~ 11363792 (-) True G385091
TU456563 lncRNA upstream 168887 11445861 ~ 11446527 (-) True G385109
TU456640 lncRNA upstream 264815 11541789 ~ 11544560 (-) True G385171
TU456639 lncRNA upstream 267672 11544646 ~ 11545941 (-) True G385170
XM_034300955.1 mRNA downstream 122071 11147131 ~ 11151024 (-) True LOC113523726
XM_026922349.2 mRNA downstream 291181 10834457 ~ 10981914 (-) True mcc
XM_026922350.2 mRNA downstream 295972 10834457 ~ 10977123 (-) False mcc
XM_026922348.2 mRNA downstream 297750 10834457 ~ 10975345 (-) False mcc
XM_026922025.2 mRNA downstream 507984 10699198 ~ 10765111 (-) False coro1cb
XM_034300936.1 mRNA upstream 78700 11355674 ~ 11452919 (-) False mvb12ba
XM_026922407.2 mRNA upstream 78700 11355674 ~ 11452919 (-) True mvb12ba
XM_034300586.1 mRNA upstream 269335 11546309 ~ 11627686 (-) False map1b
XM_026921649.2 mRNA upstream 271793 11548767 ~ 11627686 (-) True map1b
XM_034300588.1 mRNA upstream 271794 11548768 ~ 11627686 (-) False map1b
TU456386 other downstream 189154 11078712 ~ 11083941 (-) True G384960
TU456221 other downstream 666823 10605990 ~ 10606272 (-) True G384811
XR_003403283.1 other downstream 1588322 9684647 ~ 9684773 (-) True LOC113531681
XR_003403281.1 other downstream 1588697 9684272 ~ 9684398 (-) True LOC113531679
XR_003403284.2 other downstream 1589990 9682981 ~ 9683105 (-) True LOC113531682
XR_004577405.1 other upstream 344688 11621662 ~ 11627582 (-) False map1b
XR_004577404.1 other upstream 344688 11621662 ~ 11627522 (-) False map1b
XR_003403212.2 other upstream 414260 11691234 ~ 11698544 (-) False LOC113531030
XR_003403280.1 other upstream 2536259 13813233 ~ 13813329 (-) True LOC113531678
XR_003403286.1 other upstream 2638390 13915364 ~ 13915497 (-) True LOC113531684

Expression Profile