Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577440.1 |
| length | 789 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 2 |
| gene id | LOC117596259 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 11101827 ~ 11102812 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko00450 | Selenocompound metabolism |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU456388 | lncRNA | downstream | 28662 | 11062540 ~ 11073165 (-) | True | G384962 |
| XR_003403264.2 | lncRNA | downstream | 184564 | 10914139 ~ 10917263 (-) | True | LOC113531553 |
| TU456353 | lncRNA | downstream | 275873 | 10821637 ~ 10825954 (-) | True | G384928 |
| TU456349 | lncRNA | downstream | 282067 | 10785595 ~ 10819760 (-) | True | G384927 |
| TU456350 | lncRNA | downstream | 303309 | 10785595 ~ 10798518 (-) | False | G384927 |
| TU456509 | lncRNA | upstream | 116249 | 11219061 ~ 11219490 (-) | True | G385060 |
| TU456511 | lncRNA | upstream | 117144 | 11219956 ~ 11276974 (-) | True | G385061 |
| TU456512 | lncRNA | upstream | 170283 | 11273095 ~ 11276974 (-) | False | G385061 |
| TU456518 | lncRNA | upstream | 182517 | 11285329 ~ 11285555 (-) | True | G385067 |
| TU456545 | lncRNA | upstream | 258721 | 11361533 ~ 11363792 (-) | True | G385091 |
| XM_026922349.2 | mRNA | downstream | 119913 | 10834457 ~ 10981914 (-) | True | mcc |
| XM_026922350.2 | mRNA | downstream | 124704 | 10834457 ~ 10977123 (-) | False | mcc |
| XM_026922348.2 | mRNA | downstream | 126482 | 10834457 ~ 10975345 (-) | False | mcc |
| XM_034300712.1 | mRNA | downstream | 318837 | 10699198 ~ 10782990 (-) | False | coro1cb |
| XM_034300955.1 | mRNA | upstream | 44319 | 11147131 ~ 11151024 (-) | True | LOC113523726 |
| XM_034300936.1 | mRNA | upstream | 252862 | 11355674 ~ 11452919 (-) | False | mvb12ba |
| XM_026922407.2 | mRNA | upstream | 252862 | 11355674 ~ 11452919 (-) | True | mvb12ba |
| XM_034300586.1 | mRNA | upstream | 443497 | 11546309 ~ 11627686 (-) | False | map1b |
| XM_026921649.2 | mRNA | upstream | 445955 | 11548767 ~ 11627686 (-) | True | map1b |
| TU456386 | other | downstream | 17886 | 11078712 ~ 11083941 (-) | True | G384960 |
| TU456221 | other | downstream | 495555 | 10605990 ~ 10606272 (-) | True | G384811 |
| XR_003403283.1 | other | downstream | 1417054 | 9684647 ~ 9684773 (-) | True | LOC113531681 |
| XR_003403281.1 | other | downstream | 1417429 | 9684272 ~ 9684398 (-) | True | LOC113531679 |
| XR_003403284.2 | other | downstream | 1418722 | 9682981 ~ 9683105 (-) | True | LOC113531682 |
| XR_004577405.1 | other | upstream | 518850 | 11621662 ~ 11627582 (-) | False | map1b |
| XR_004577404.1 | other | upstream | 518850 | 11621662 ~ 11627522 (-) | False | map1b |
| XR_003403212.2 | other | upstream | 588422 | 11691234 ~ 11698544 (-) | False | LOC113531030 |
| XR_003403280.1 | other | upstream | 2710421 | 13813233 ~ 13813329 (-) | True | LOC113531678 |
| XR_003403286.1 | other | upstream | 2812552 | 13915364 ~ 13915497 (-) | True | LOC113531684 |
