LOC113531678


Basic Information

Item Value
gene id LOC113531678
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13813233 ~ 13813329 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403280.1
AGCTATGATGAGTAAAAGAAACATTGCTGACTTGGTATTGGTACCTTCGGGTGTCTCTGACCAGGGTCTGATTGCTTTTAATCTTCTCTCTGAGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403280.1 True 97 ncRNA 0.43 1 13813233 13813329

Neighbor

gene id symbol gene type direction distance location
LOC113531537 rasl10b,LOC107685904,LOC107595522,LOC107681887,LOC107710719,LOC107587740 coding downstream 37195 13766176 ~ 13776038 (-)
hnrnpul1l LOC108259896,LOC107595510,LOC105027039 coding downstream 68874 13731209 ~ 13744359 (-)
sympk sympk,LOC107681888,LOC107685698 coding downstream 83761 13719345 ~ 13729472 (-)
rsph4a rsph6a coding downstream 95131 13713676 ~ 13718102 (-)
si:dkeyp-117b8.4 LOC108259900,LOC108428299,LOC103043164 coding downstream 105833 13703501 ~ 13707400 (-)
bckdk bckdk,LOC107685622,LOC107681895,LOC106603456 coding upstream 10057 13823386 ~ 13841334 (-)
lrwd1 lrwd1 coding upstream 29849 13843178 ~ 13852283 (-)
alkbh4 alkbh4 coding upstream 41890 13855219 ~ 13858118 (-)
polr2j polr2j,LOC107587688,LOC107595521 coding upstream 45810 13859139 ~ 13862155 (-)
castor2 gatsl2,LOC107685562,LOC107595468,LOC107587690,LOC107681899 coding upstream 78883 13892212 ~ 13908457 (-)
G386814 NA non-coding downstream 141093 13671223 ~ 13672140 (-)
G386763 NA non-coding downstream 289911 13523086 ~ 13523322 (-)
G386730 NA non-coding downstream 464030 13327325 ~ 13349203 (-)
G386705 NA non-coding downstream 490241 13293523 ~ 13322992 (-)
G386644 NA non-coding downstream 605159 13207399 ~ 13208074 (-)
G386849 NA non-coding upstream 40508 13853837 ~ 13854055 (-)
LOC117596230 NA non-coding upstream 62688 13876017 ~ 13876806 (-)
G386868 NA non-coding upstream 97933 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding upstream 102035 13915364 ~ 13915497 (-)
G386873 NA non-coding upstream 117158 13930487 ~ 13930698 (-)
selenow1 LOC103044489 other downstream 132708 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 921938 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 2114689 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 2185547 11546309 ~ 11627686 (-)
G384960 NA other downstream 2729292 11078712 ~ 11083941 (-)
ccdc84 ccdc84 other upstream 1103333 14916662 ~ 14923390 (-)
nrgna NA other upstream 1205564 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 2069009 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 2550165 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 2944911 16758240 ~ 16763476 (-)

Expression


Co-expression Network