rsph4a (rsph6a)


Basic Information

Item Value
gene id rsph4a
gene name rsph6a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13713676 ~ 13718102 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922327.2
GTCTCTATGGCAACGAACTGGCGCTGTTTTTTGTAGACATGTAACGCGCAATAAAGAACATAAGGGTGCattaaatatagttttattatttattttcttttgtttttaactgaaCGACAGAAACATGGAGAGGTCTGTGGAAGCGCTGGCTGACCAGAAGCAGCGGTCTGCAGCCTGCTTCAAGGCTTTCCTGctgaaaaacagcacaaaaacaaacctCAACCTCTATGACCATCTGGTTCGCCTGCTCACCAGAGTGATGGACGAGCGTCCGGAGAACGCAGTGGATGTGATTGAAGATCTGAGCCACGAGATAAAGCGCGGCATGCTGCAGGAGAACCAGAGCACGCTGCGGGACGCGCCGTCCACAACCTCCTCTGAGCTGCTGGCTGAGCAGCAGAGAGCGCTGTTTAACCGCGGGGGCGAGGGAGAACAAGAGGAGGTGCTGATGGAGACACCCCTGCCCAATGTGACTGAGCTGACTTTCTTCCTGGAGCAGATTGGGGTTGGTCTGGGTCGGGAGGAGATGCAGAGGATCCTCCTGGCCCTGAAGCAGCTGGTGGACATGCAGCCCCTGCAACGCTGCCGATTCTGGGGCAAAATCCTCGGTATTGAAGGGAACTACGTGGTGGCTGAAGTGGAATACAGGGAcggtgaggaagaagaggaagaaggagtGGAGGAAAAGGATGAAGAcaaggagaaagagggagaggctCAAGAAGAAGATGAGCTGGATCCATTCCCCAAGTCAAGCTACAAGCCACCCACCCCAGTAACTAAGGAGCCTCGTCGCTCCGGTGCCAACAAGTTCAcctactttgtgtgcagagagcCTGGCCTGCCCTGGGTCCGTCTTCCTGATGTCACCCCAGCTCAGATCACAGTCGCTCGACAAATTCGCAAGTTCTTCACCGGGTGCCTGGACGCACCCATCGTGAGCTACCCACCCTTCCCAGGCAATGAGGCCAACTACCTGCGTGCCCAGATTGCCCGCATCTCAGCAGGCACCCAGGTCAGTCCACTGGGTTTCTATCAGTTCAAAGAGGAGGAgggggaagaggaagaggaaggagcGAGAGACAGCGTCGAGGAGAACTCTGACTTTGAGGGTATCCCTGTGCACGAGATGGCAGAGTCGCTGTCGGCGTGGGTCCACCACATACAGCACATTCTCAAGCAGGGTCGTTGTGTGTGGGTCAATCTGgctgaaaagaaagagaatcTCCTTGAAGAAGatgcagaggaagaggagaaggaggaagaacCCGACGAGCCTGAGCCTGAGGTTGGACCGCCGCTTCTCACGCCACTGTCTGAGGACGCAGagGTTAATCACACGCCTCCTTGGACTACCAGGATCTCCTCAAACCTAATCTCCCAGTATGCCATTGCTTTTGTGCGCTCCAACCTGTGGCCTGGAGCTTACGCGTACGTGTGCGGCAAGAAGTTTGAGAACATATACATCGGCTGGGGGCTGAAGTTCTTGGGCGAGGGCTTTACCCCAGCGCTGCCTCCTCCCCCACAGCCCGAGTACCCCAGTGGCCCTGAGATTACAGAGGCACTGGACCCCAGTctgcaggaggaggaggctCTGAAGGAAGCCCAAGAGGAGAAACAGGCTGCGCTGGAAGACAACGATGCATTGGACGccgaggaagaggaggaagaagaggaaaactGAATGACACAGACTGATACACAGTGGACTGAGGTCTTTTAACATATGCGACTATATTAAACTGTTATGGATAAACATTgatcattttctcatttctttgttATTATACAGCGCTGTtaaatgcttgattctgattggccagaaggttgATTCGatttctgtgtttatattaatgcgctaatttgaatacattttcattCCTACAGTATAAGCCAATTTTCAGGGATGTgtataaacaaatttattaaaaacaaaaagcatgcaattGTTGATATAAtgtgtaaagttttctgtgaggaactATGTATCTATTTagcatttagggaaggagtaaC
>XM_026922328.2
GTCTCTATGGCAACGAACTGGCGCTGTTTTTTGTAGACATGTAACGCGCAATAAAGAACATAAGGGTGCattaaatatagttttattatttattttcttttgtttttaactgaaCGACAGAAACATGGAGAGGTCTGTGGAAGCGCTGGCTGACCAGAAGCAGCGGTCTGCAGCCTGCTTCAAGGCTTTCCTGctgaaaaacagcacaaaaacaaacctCAACCTCTATGACCATCTGGTTCGCCTGCTCACCAGAGTGATGGACGAGCGTCCGGAGAACGCAGTGGATGTGATTGAAGATCTGAGCCACGAGATAAAGCGCGGCATGCTGCAGGAGAACCAGAGCACGCTGCGGGACGCGCCGTCCACAACCTCCTCTGAGCTGCTGGCTGAGCAGCAGAGAGCGCTGTTTAACCGCGGGGGCGAGGGAGAACAAGAGGAGATGGAGACACCCCTGCCCAATGTGACTGAGCTGACTTTCTTCCTGGAGCAGATTGGGGTTGGTCTGGGTCGGGAGGAGATGCAGAGGATCCTCCTGGCCCTGAAGCAGCTGGTGGACATGCAGCCCCTGCAACGCTGCCGATTCTGGGGCAAAATCCTCGGTATTGAAGGGAACTACGTGGTGGCTGAAGTGGAATACAGGGAcggtgaggaagaagaggaagaaggagtGGAGGAAAAGGATGAAGAcaaggagaaagagggagaggctCAAGAAGAAGATGAGCTGGATCCATTCCCCAAGTCAAGCTACAAGCCACCCACCCCAGTAACTAAGGAGCCTCGTCGCTCCGGTGCCAACAAGTTCAcctactttgtgtgcagagagcCTGGCCTGCCCTGGGTCCGTCTTCCTGATGTCACCCCAGCTCAGATCACAGTCGCTCGACAAATTCGCAAGTTCTTCACCGGGTGCCTGGACGCACCCATCGTGAGCTACCCACCCTTCCCAGGCAATGAGGCCAACTACCTGCGTGCCCAGATTGCCCGCATCTCAGCAGGCACCCAGGTCAGTCCACTGGGTTTCTATCAGTTCAAAGAGGAGGAgggggaagaggaagaggaaggagcGAGAGACAGCGTCGAGGAGAACTCTGACTTTGAGGGTATCCCTGTGCACGAGATGGCAGAGTCGCTGTCGGCGTGGGTCCACCACATACAGCACATTCTCAAGCAGGGTCGTTGTGTGTGGGTCAATCTGgctgaaaagaaagagaatcTCCTTGAAGAAGatgcagaggaagaggagaaggaggaagaacCCGACGAGCCTGAGCCTGAGGTTGGACCGCCGCTTCTCACGCCACTGTCTGAGGACGCAGagGTTAATCACACGCCTCCTTGGACTACCAGGATCTCCTCAAACCTAATCTCCCAGTATGCCATTGCTTTTGTGCGCTCCAACCTGTGGCCTGGAGCTTACGCGTACGTGTGCGGCAAGAAGTTTGAGAACATATACATCGGCTGGGGGCTGAAGTTCTTGGGCGAGGGCTTTACCCCAGCGCTGCCTCCTCCCCCACAGCCCGAGTACCCCAGTGGCCCTGAGATTACAGAGGCACTGGACCCCAGTctgcaggaggaggaggctCTGAAGGAAGCCCAAGAGGAGAAACAGGCTGCGCTGGAAGACAACGATGCATTGGACGccgaggaagaggaggaagaagaggaaaactGAATGACACAGACTGATACACAGTGGACTGAGGTCTTTTAACATATGCGACTATATTAAACTGTTATGGATAAACATTgatcattttctcatttctttgttATTATACAGCGCTGTtaaatgcttgattctgattggccagaaggttgATTCGatttctgtgtttatattaatgcgctaatttgaatacattttcattCCTACAGTATAAGCCAATTTTCAGGGATGTgtataaacaaatttattaaaaacaaaaagcatgcaattGTTGATATAAtgtgtaaagttttctgtgaggaactATGTATCTATTTagcatttagggaaggagtaaC

Function

symbol description
rsph6a Predicted to be involved in cilium assembly; cilium movement; and manchette disassembly. Predicted to be located in sperm flagellum. Predicted to be part of radial spoke. Predicted to be active in axoneme.

NR:

description
radial spoke head protein 6 homolog A-like

GO: NA

KEGG:

id description
K19756 RSPH4_6; radial spoke head protein 4/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922327.2 True 2016 mRNA 0.51 7 13713676 13718102
XM_026922328.2 False 2010 mRNA 0.51 7 13713676 13718102

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-117b8.4 LOC108259900,LOC108428299,LOC103043164 coding downstream 6276 13703501 ~ 13707400 (-)
ehd2a LOC108260244,LOC108427007,LOC107712157 coding downstream 18173 13683350 ~ 13695503 (-)
akap10 akap10 coding downstream 40058 13655790 ~ 13673618 (-)
LOC113531016 LOC108260420,LOC108427286,LOC106567973,LOC103045102,LOC107712159,LOC106534416 coding downstream 60721 13531313 ~ 13652955 (-)
pho NA coding downstream 197096 13506512 ~ 13516580 (-)
sympk sympk,LOC107681888,LOC107685698 coding upstream 1243 13719345 ~ 13729472 (-)
hnrnpul1l LOC108259896,LOC107595510,LOC105027039 coding upstream 13107 13731209 ~ 13744359 (-)
LOC113531537 rasl10b,LOC107685904,LOC107595522,LOC107681887,LOC107710719,LOC107587740 coding upstream 48074 13766176 ~ 13776038 (-)
ap2b1 ap2b1,LOC107681897,LOC101171688 coding upstream 60434 13778536 ~ 13813583 (-)
orai2 LOC108259892,LOC108428392,LOC103026696,LOC107685638,LOC107595471,LOC107710735 coding upstream 95002 13813104 ~ 13820831 (-)
G386814 NA non-coding downstream 41536 13671223 ~ 13672140 (-)
G386763 NA non-coding downstream 190354 13523086 ~ 13523322 (-)
G386730 NA non-coding downstream 364473 13327325 ~ 13349203 (-)
G386705 NA non-coding downstream 390684 13293523 ~ 13322992 (-)
G386644 NA non-coding downstream 505602 13207399 ~ 13208074 (-)
G386845 pex12,LOC107587685,LOC107681885,LOC107710733 non-coding upstream 91499 13809601 ~ 13827854 (-)
G386849 NA non-coding upstream 135735 13853837 ~ 13854055 (-)
LOC117596230 NA non-coding upstream 157915 13876017 ~ 13876806 (-)
G386868 NA non-coding upstream 193160 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding upstream 197262 13915364 ~ 13915497 (-)
selenow1 LOC103044489 other downstream 33151 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 822381 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 2015132 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 2085990 11546309 ~ 11627686 (-)
G384960 NA other downstream 2629735 11078712 ~ 11083941 (-)
ccdc84 ccdc84 other upstream 1198560 14916662 ~ 14923390 (-)
nrgna NA other upstream 1300791 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 2164236 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 2645392 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 3040138 16758240 ~ 16763476 (-)

Expression


Co-expression Network