G386814


Basic Information

Item Value
gene id G386814
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13671223 ~ 13672140 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU458494
cataacattattaccactgacaggtgaagtgaataatattgattatctcattacaatagcacctgtcaagggttgagatatattaggcagcaagtgaccagtcggttcttgaagttgatgtgttggaagcaggaaaaatgagcaagcgtaaggattagagagactttgacaccAGCCTAATTGTGATGTCTAGACgactgagtcagagcatctttaaaacagcaggccttgtggggtgttcccggtatgcaggggttagtacctaccaaaagtggtccaaggaaggaacaccggtgaactagcgacagggttgTGGGTGttcaaggctcactgatgtgcatggggagtgaaggctagcccgtctggtctgatcccacacaagagctactgtagctcagattgctgaaaagttaaagctggctatgatagaaaggtgtcagaacacacagtgcatcgcagcttgctgcgtatggggctgtgtagccacagacctgtcagagtgcccatgctgacccctgtccaccgccaaaagtgcctacaatggacaggtgagcatcagaactggaccatggagcaatggaagaaggtggcctggtctgatacatcacattttcttttacatcatgtggaaggctgggtgcgtgtgcatcgtttacctggggaagagatggcaccagcatgcactatggaagaacgcaagctagggcaggcagtgtgatgctctgggcaatgttctgctgggaaactttgggtcctggcattcacgtggatgctattttgattattcaggaatggttcgag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU458494 True 801 lncRNA 0.49 2 13671223 13672140

Neighbor

gene id symbol gene type direction distance location
LOC113531016 LOC108260420,LOC108427286,LOC106567973,LOC103045102,LOC107712159,LOC106534416 coding downstream 18268 13531313 ~ 13652955 (-)
pho NA coding downstream 154643 13506512 ~ 13516580 (-)
aspa aspa coding downstream 167231 13484582 ~ 13503992 (-)
abr abr,si:ch211-253h3.1,LOC103375456,LOC107731041,LOC107688618,LOC107712163 coding downstream 193998 13325782 ~ 13477225 (-)
nanos2 NA coding downstream 348762 13321245 ~ 13322461 (-)
ehd2a LOC108260244,LOC108427007,LOC107712157 coding upstream 11210 13683350 ~ 13695503 (-)
si:dkeyp-117b8.4 LOC108259900,LOC108428299,LOC103043164 coding upstream 31361 13703501 ~ 13707400 (-)
rsph4a rsph6a coding upstream 41536 13713676 ~ 13718102 (-)
sympk sympk,LOC107681888,LOC107685698 coding upstream 47205 13719345 ~ 13729472 (-)
hnrnpul1l LOC108259896,LOC107595510,LOC105027039 coding upstream 59069 13731209 ~ 13744359 (-)
G386763 NA non-coding downstream 147901 13523086 ~ 13523322 (-)
G386730 NA non-coding downstream 322020 13327325 ~ 13349203 (-)
G386705 NA non-coding downstream 348231 13293523 ~ 13322992 (-)
G386644 NA non-coding downstream 463149 13207399 ~ 13208074 (-)
G386632 NA non-coding downstream 476230 13194788 ~ 13194993 (-)
G386845 pex12,LOC107587685,LOC107681885,LOC107710733 non-coding upstream 137461 13809601 ~ 13827854 (-)
G386849 NA non-coding upstream 181697 13853837 ~ 13854055 (-)
LOC117596230 NA non-coding upstream 203877 13876017 ~ 13876806 (-)
G386868 NA non-coding upstream 239122 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding upstream 243224 13915364 ~ 13915497 (-)
garnl3 garnl3,LOC107700942 other downstream 779928 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 1972679 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 2043537 11546309 ~ 11627686 (-)
G384960 NA other downstream 2587282 11078712 ~ 11083941 (-)
G384811 NA other downstream 3064951 10605990 ~ 10606272 (-)
ccdc84 ccdc84 other upstream 1244522 14916662 ~ 14923390 (-)
nrgna NA other upstream 1346753 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 2210198 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 2691354 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 3086100 16758240 ~ 16763476 (-)

Expression


Co-expression Network