LOC113531016 (LOC108260420,LOC108427286,LOC106567973,LOC103045102,LOC107712159,LOC106534416)


Basic Information

Item Value
gene id LOC113531016
gene name LOC108260420,LOC108427286,LOC106567973,LOC103045102,LOC107712159,LOC106534416
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13531313 ~ 13652955 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921466.2
TGGAGAGGCGCTGCTCCGTAACcattcactactgtgtgtgtgtgtcagctagGCAGCTTGCAGAGCTCTGGACAAGACTGATTTGGTTTCGGCTcgtatttgtgttttgtgtaccaGCTTGTGATTGACAATGCATGCGTCCTGCTGGAATACCGCGTCCTAGAAGTAGCGCGTGTTGGGATTTTACTCCACTGACGTTTGCCGAAACTTCGTGGCGCGCGCCTTGCTCATCCGCGTCCTCTTTCATTTCTTGTACCGGATTAAAGGCTTTTCACTTCACCGCGCACTTCACATGGTATACTGGTTCCCAGAGCAGGGTATGCTCGTTTCCACGTACAGCGCGCGCACTCCAGATGCATGTACTGCTTGACCGGGACAGGAAAGAAGCCGCGGTTGGCACCGGCACCATGTTCAGCTGTGTGGGCTGCTTCTGGCTGCTGCTGTCCGCCGCGCTCGTTGCGCTCTGCAGCTTCAGCTTCATCTCTCCAGCCTGGATCGTGAAGGAGCAGCAGCACGGGAGGAGCGGCCACTCGGTCAGTTTCGGCCTGCTCTGGCACTGCTCCGAGTCTCTGGACCACATGTACACATGCTACGCGTTTGGCGGCATTGGGAGGTTTGCCGAGATTCCCTCCAGCTCCTGGCAGaCGAGCGCTGTGCTGTGCTCCGGAGGTTGCGCGCTGTTGGCCGTCAGCTCGCTGCTGGCTATCATCACCATCTTCTTGCCTGGTGGAAACTGCGAGAGGAAGATCTGCACACTGGCTGGGTACATGCAGATGGCTGCAGtgtTCATCATGGCATCTGGCTTGCTGGTTTATCCCTTTGGCCTAAACTCCAGTTTGGTCAAGTCTTTCTGCGGAAACTCGGACATCTACTACGCCGGCGAGTGCCAGATAGGCTGGGGCTACATGTTGGCCATCGTGGGTGTCATGCTCACCCTCTTTTTACCCTTCTTTGCCAAGTACGCCCCAAAAGAGCATCTCCTGCCCACCCCACTGCCCACACTTTTATAAACCTCCTGCTATGCCCATCGTATCTCCTCTGAGCTGTTAAGATCTGTATCGCCCCATTCTTTTTCTTGGTCAACAATGATAATGTTGCCACTTTGGAATAAGTGTGCCCAGAGGAGCCATTGTATTCATTGTGTGATGTGCTACATTGTCTTCCTTCACCTGATAAGCTACTTCCTTTCATCGGCATCCCTCGTGGTTCTGAAAAGTCTTTATTTGGAAATGCAAATTCCTGGAAACTCCCgtttttccttttctcactaCAAACTAATTTATGCTTTTAATCACATGAAATGCAATTTAATGCATCAACACTGAAATCTTTGGAAAGGCAACACCAAAACAGCAGACTAAACTATGCGAATGGTAAATCTAACATTCTAATTCTACCTAATACACATCTGGATGCAAAGAATGTGAGAGGACAAGGAGAACTGTTCTCCCAAACATCAGGGATTATTCTGAACATCAAGAGGAAAGCAAGGAACTCAAGTCTTTCATGCAACGTCAAATAATATTCAACTACCCAAGACCAATTACAAAGGAGAGTAGGAACACTGTTCTTGGATCCACTGGCTATGaatgttttcttcttcactATGGATCAGGCTTTTGAGGAAATAAAATGGGTTTATGATCCCAATGAAAATCTGAAGGGTTTGGAAAATCTGCCATATATTTATCCAGTAACAACAAACACTGTGGCTAACAGGCTAGGAGaacagaaaaactgaaaaattttttcttaaaaaatttattacacaaactggtgtttttttaatatattttgcttTAGAACCTGGGCTGTGACTAGTCAGTGCACGTCCAGCAGTGAGAAAATAGTAGATGACGCTTGTGACCacttaaatgaagaaaaaaaaaaagggagtggGGGCAACAAAAGCACTGACATTTTCAACTTGTGTTGTAATTTTAAATGACCTAAAAATCTGAAAacctgtgtgtctctgtttgccGTCACTTCCTATCAGTTTTAATAGGAATATTAAATGTCCAAGTTATACCGTCTGTTTTGTGCTTGGACCCTTCACTAAACTGAATATTCAGGATTACACaagatcaagaaaaaaaaatacaagatatactgatggaaaaaaaaaa
>XM_026921467.2
TGGAGAGGCGCTGCTCCGTAACcattcactactgtgtgtgtgtgtcagctagGCAGCTTGCAGAGCTCTGGACAAGACTGATTTGGTTTCGGCTcgtatttgtgttttgtgtaccaGCTTGTGATTGACAATGCATGCGTCCTGCTGGAATACCGCGTCCTAGAAGTAGCGCGTGTTGGGATTTTACTCCACTGACGTTTGCCGAAACTTCGTGGCGCGCGCCTTGCTCATCCGCGTCCTCTTTCATTTCTTGTACCGGATTAAAGGCTTTTCACTTCACCGCGCACTTCACATGGTATACTGGTTCCCAGAGCAGGGTATGCTCGTTTCCACGTACAGCGCGCGCACTCCAGATGCATGTACTGCTTGACCGGGACAGGAAAGAAGCCGCGGTTGGCACCGGCACCATGTTCAGCTGTGTGGGCTGCTTCTGGCTGCTGCTGTCCGCCGCGCTCGTTGCGCTCTGCAGCTTCAGCTTCATCTCTCCAGCCTGGATCGTGAAGGAGCAGCAGCACGGGAGGAGCGGCCACTCGGTCAGTTTCGGCCTGCTCTGGCACTGCTCCGAGTCTCTGGACCACATGTACACATGCTACGCGTTTGGCGGCATTGGGAGGTTTGCCGAGATTCCCTCCAGCTCCTGGCAGaCGAGCGCTGTGCTGTGCTCCGGAGGTTGCGCGCTGTTGGCCGTCAGCTCGCTGCTGGCTATCATCACCATCTTCTTGCCTGGTGGAAACTGCGAGAGGAAGATCTGCACACTGGCTGGGTACATGCAGATGGCTGCAGGGTCCCCtaagtgaaaataaatctgattGATGCCTACATAGCAGAGGAAGCCTATAAGAAGATATCAGAGCACTTCCAGCTTACAATTTCcagtgtctgaaatgtcaaGGTCAAGGCAA
>XM_034300711.1
TGGAGAGGCGCTGCTCCGTAACcattcactactgtgtgtgtgtgtcagctagGCAGCTTGCAGAGCTCTGGACAAGACTGATTTGGTTTCGGCTcgtatttgtgttttgtgtaccaGCTTGTGATTGACAATGCATGCGTCCTGCTGGAATACCGCGTCCTAGAAGTAGCGCGTGTTGGGATTTTACTCCACTGACGTTTGCCGAAACTTCGTGGCGCGCGCCTTGCTCATCCGCGTCCTCTTTCATTTCTTGTACCGGATTAAAGGCTTTTCACTTCACCGCGCACTTCACATGGTATACTGGTTCCCAGAGCAGGGTATGCTCGTTTCCACGTACAGCGCGCGCACTCCAGATGCATGTACTGCTTGACCGGGACAGGAAAGAAGCCGCGGTTGGCACCGGCACCATGTTCAGCTGTGTGGGCTGCTTCTGGCTGCTGCTGTCCGCCGCGCTCGTTGCGCTCTGCAGCTTCAGCTTCATCTCTCCAGCCTGGATCGTGAAGGAGCAGCAGCACGGGAGGAGCGGCCACTCGGTCAGTTTCGGCCTGCTCTGGCACTGCTCCGAGTCTCTGGACCACATGTACACATGCTACGCGTTTGGCGGCATTGGGAGGTTTGCCGAGATTCCCTCCAGCTCCTGGCAGaCGAGCGCTGTGCTGTGCTCCGGAGGTTGCGCGCTGTTGGCCGTCAGCTCGCTGCTGGCTATCATCACCATCTTCTTGCCTGGTGGAAACTGCGAGAGGAAGATCTGCACACTGGCTGGGTACATGCAGATGGCTGCAGACCTGAAGAACCTTCAGTTGTGAACTGGGCTTCCATCCAACTGGAGTGGGTGCTTAATTGAGAAGAATGAGATGAAGGAGAAGGATCTATTCATCTGTGTGGGATAGACAATGGTAGAATAAGAGAGAAGTTCATCTTGTTTATCAACaggttctctctttttttttttggactatccttcttttcctttcttcagcAAGTGACACACTTGGAAAAACCAACATGAGCTTTAATAAAGTTGACAAATGACACTTTTTAATCACCTTAGTTCAGAATGCTGGACATGATTGTTTGAGAGATGGTTAGCACATGGCCTTCAGCTCTCTGCATGTACATCTTATGAAAGACGTTCCTCCGAGGTTCATCAAAGGTTCCTCGGATGTTCCTTAGACGTTCTTCAGAGATTCTGTACCTCATTAAGCCTGCAGTGCGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921466.2 True 2129 mRNA 0.46 3 13531313 13652955
XM_026921467.2 False 902 mRNA 0.55 3 13592342 13652955
XM_034300711.1 False 1217 mRNA 0.51 3 13575436 13652955

Neighbor

gene id symbol gene type direction distance location
pho NA coding downstream 14733 13506512 ~ 13516580 (-)
aspa aspa coding downstream 27321 13484582 ~ 13503992 (-)
abr abr,si:ch211-253h3.1,LOC103375456,LOC107731041,LOC107688618,LOC107712163 coding downstream 54088 13325782 ~ 13477225 (-)
nanos2 NA coding downstream 208852 13321245 ~ 13322461 (-)
zswim7 zswim7,LOC107712139,LOC107688637,LOC107665024,LOC107740465 coding downstream 210970 13286852 ~ 13320343 (-)
akap10 akap10 coding upstream 2835 13655790 ~ 13673618 (-)
ehd2a LOC108260244,LOC108427007,LOC107712157 coding upstream 30395 13683350 ~ 13695503 (-)
si:dkeyp-117b8.4 LOC108259900,LOC108428299,LOC103043164 coding upstream 50546 13703501 ~ 13707400 (-)
rsph4a rsph6a coding upstream 60721 13713676 ~ 13718102 (-)
sympk sympk,LOC107681888,LOC107685698 coding upstream 66390 13719345 ~ 13729472 (-)
G386763 NA non-coding downstream 7991 13523086 ~ 13523322 (-)
G386730 NA non-coding downstream 182110 13327325 ~ 13349203 (-)
G386705 NA non-coding downstream 208321 13293523 ~ 13322992 (-)
G386644 NA non-coding downstream 323239 13207399 ~ 13208074 (-)
G386632 NA non-coding downstream 336320 13194788 ~ 13194993 (-)
G386814 NA non-coding upstream 18268 13671223 ~ 13672140 (-)
G386845 pex12,LOC107587685,LOC107681885,LOC107710733 non-coding upstream 156646 13809601 ~ 13827854 (-)
G386849 NA non-coding upstream 200882 13853837 ~ 13854055 (-)
LOC117596230 NA non-coding upstream 223062 13876017 ~ 13876806 (-)
G386868 NA non-coding upstream 258307 13911262 ~ 13916801 (-)
garnl3 garnl3,LOC107700942 other downstream 640018 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 1832769 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 1903627 11546309 ~ 11627686 (-)
G384960 NA other downstream 2447372 11078712 ~ 11083941 (-)
G384811 NA other downstream 2925041 10605990 ~ 10606272 (-)
ccdc84 ccdc84 other upstream 1263707 14916662 ~ 14923390 (-)
nrgna NA other upstream 1365938 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 2229383 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 2710539 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 3105285 16758240 ~ 16763476 (-)

Expression


Co-expression Network