LOC117596230


Basic Information

Item Value
gene id LOC117596230
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13876017 ~ 13876806 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577399.1
ATTGGCTAGTAACAGCCCGACGCACTGCAACGTCATTGTGCATGGTCCAATCAGCGGAGTGCTTATCAACAGGAAGCGTTGAGGCTCggaatgaaaaaatgatgcaaatgGTCGCTAGAGGTCgcgctgtttttattttaaatagattttggtttttttaactCTATCGAGATCCGTAGAAATTTTAAGAGGGACAAACGTGGGCGGAGCTAAGGGGTAGCCAGGGGGTGGCCAGTGACCAAATACGAAACCAGCCATATTAGAGCAAGGGGGCATCATTCCTTGACTGTTGTGCCTTTTCTGTCCCTGAAGAAAACAATCTCATTAGATGTAAAGAGTTGTTTTAGACCTCCATCCATGCATTTCCATAAAGGTTATCCTACACaagacagggtgccaacccatcgcagggcacaatcacacgccatggacaatttggaaatgccaatctgCCTACatcacgtctttggactggaggaggaactcggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577399.1 True 490 lncRNA 0.46 3 13876017 13876806

Neighbor

gene id symbol gene type direction distance location
polr2j polr2j,LOC107587688,LOC107595521 coding downstream 13862 13859139 ~ 13862155 (-)
alkbh4 alkbh4 coding downstream 17899 13855219 ~ 13858118 (-)
lrwd1 lrwd1 coding downstream 23734 13843178 ~ 13852283 (-)
bckdk bckdk,LOC107685622,LOC107681895,LOC106603456 coding downstream 34683 13823386 ~ 13841334 (-)
orai2 LOC108259892,LOC108428392,LOC103026696,LOC107685638,LOC107595471,LOC107710735 coding downstream 55186 13813104 ~ 13820831 (-)
castor2 gatsl2,LOC107685562,LOC107595468,LOC107587690,LOC107681899 coding upstream 15406 13892212 ~ 13908457 (-)
LOC113531503 doc2b,LOC107685552,LOC107681901,LOC106603746 coding upstream 44934 13921740 ~ 13989353 (-)
LOC113531468 LOC108260357,LOC108428416,LOC107714896,LOC107691814,LOC107572424 coding upstream 180599 14057405 ~ 14070855 (-)
tmem248 tmem248,LOC107714897,LOC107572429,LOC107691774 coding upstream 197735 14074541 ~ 14085085 (-)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding upstream 216758 14093564 ~ 14103564 (-)
G386849 NA non-coding downstream 21962 13853837 ~ 13854055 (-)
G386845 pex12,LOC107587685,LOC107681885,LOC107710733 non-coding downstream 48163 13809601 ~ 13827854 (-)
G386814 NA non-coding downstream 203877 13671223 ~ 13672140 (-)
G386763 NA non-coding downstream 352695 13523086 ~ 13523322 (-)
G386730 NA non-coding downstream 526814 13327325 ~ 13349203 (-)
G386868 NA non-coding upstream 34456 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding upstream 38558 13915364 ~ 13915497 (-)
G386873 NA non-coding upstream 53681 13930487 ~ 13930698 (-)
G387048 NA non-coding upstream 462510 14339316 ~ 14340196 (-)
G387277 NA non-coding upstream 993713 14870519 ~ 14877458 (-)
selenow1 LOC103044489 other downstream 195492 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 984722 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 2177473 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 2248331 11546309 ~ 11627686 (-)
G384960 NA other downstream 2792076 11078712 ~ 11083941 (-)
ccdc84 ccdc84 other upstream 1039856 14916662 ~ 14923390 (-)
nrgna NA other upstream 1142087 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 2005532 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 2486688 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 2881434 16758240 ~ 16763476 (-)

Expression


Co-expression Network