lrwd1 (lrwd1)


Basic Information

Item Value
gene id lrwd1
gene name lrwd1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13843178 ~ 13852283 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922270.2
CTCAATATGGCGGACACGAGGCTCCACGCGCGAGCGCACTGACGTCACTTTGGTCAAAGTTCACGGTGCGTTTTCCCGGGAAAAGACAAAGTAACGAAGTAAACCCGAGTGTACATCTCATCATGGAGAAGATTACAGAGAGAATACTGCTGGAGAAAGGCTCGCCTAAAACAAACAAGCTGGAGAAAATTACCAGTCTAAATCTCTCTCGTATGGGGTTAAAGAATCAAGATCTCTCCGTGCCCTTGTTGAATAAGCTCTCTGCGCTGGAGGAGTTAGATCTTTCCGGGAACATGCTGCAGAAGCTCCCAGCAGGACTGTCCCTTCCCCGCCTGAGGCTCCTAAACTTCTCCAACAACGACATGGAGGAAGTGACCTCGCTGGTGGCCCTGACTGGCCTGGAGGAGTTGCGGCTGGATGACAATTTGTATCTCACTGTCAGCGATGAGCACAAAGTGCTTTTCCTCTTGCCCAAATTGAAGATCATGAACGGGAAGGACATCAGCGCGACGGCCAACCACATCCGCTACGTGAACAGTGAGATCCTTAGGAAGCGGGTGATTGGTGTGTGGGAGAAGAACTTCAGTCTCCCTGATCCACCAACTTCACAAAGCTTGAATGAGCTTGAGAAGAAATTTGTTAATGCGGCATGCTTTCAAGTCAAATATGGCCCCAGTTCATTAAACGACTACACCAAAtggaggGTTGAAATGATTGCAAAAGAATATCTCCAATCGCTGATTGATCcagaaaaggaggaggaagacaTAACAGCAGAGACTCCTGTAAAAGAAGCTGGGTCTCCTTCCAAGAGAAAAATTCACGACCCCGAGGCAAACTGCGACGCCGAAACCCCCCGAAAGAGAAGGACGATAAACCAAGCGGCCACGCCAGAGGCCAGTCCACGCAAATCAAGCCGGTTAGCCAGCGCCGCTTCAGTCGAGGCGAGTCCGAGAAAATCCTCTCGGCTCCAGGGGACCCCGCAGAAATCTGATCCGGGTGTCTCAAGCCCAAGGTGCGTGAAAATGAACACTCCTGAGGCGGGTCAGAGGAAATCCAGTCGCCCACAAAACACCCCAAAAAAAGCAACAGTGGCACAGGTTGCCGTGACGCCCACCGCAAAGGGAGCAAAGAAAAATCTCAAAGTTCAGCTTACGACTCCGCAAGCATGCAGCTCCaccaaaacagaaaaagaaacaatctGCAAAGCGAGTAAATACCAAGTTCCAAAGGAGCCGGTCAGTCTGCAGCCTCTTCACGTCCTGCAGTGTCACAGTAAACATGACAGTCCGGAGGATTTCAGCACCCAGTTGTGGGCCTGCGCCTTCGAGCCCGCTCACAACAACAatgcaGGTGCCTGGGCACAGTCAGTGGCTACCTGTGGAGGGGAGACGGTGTGTGTGATAGACTGCGAGTCTGGCCATGTACTGAAGAAATACAAGGTCCCTGGTGAGGAGTTCTTTACGCTGGCCTGGACCACGGTGTTGATGGCGCGTGAGGGTGGCTGCGCTCGATCCTGCAGCATCCTCGCCGCAGGAGGAAAGAGGGGCATGGTGAAACTCATCCACCCCAGAGCCAACCTGGCATACGGCGAGTTCCGCGCCAGCCGCCGAGCCATATCGATGCTACGCTTCAGCCCGTGCCATTCCAGCTTCCTGTTCAcTGGCGCGTATGATAACAAGATCATCATGTGGGATATCGGCGGGCTGGACCGAGACTACAACTTCAAAACCAGTCAGCTGCTAGTAATGGAGACCTGCTCCACTCCACTGCACCTCTCCTTTCCACCCTGCTCCCCAGACACGCACCTTATCTCAGGCTGTGACAACGGGCTTTACAGCTTCGACATCCAGCTTAGCAAGAACACACAGAAGAGGGCGGAGGAGATGGAGATTGTATTTCCTGTGTACAAGAAGAGTAATAAGAGCAATAACTACCGCACTATCGATGGACTCAGCTTCCTTACAGAAGACATAATAGcaTCTAAGAGCCACATGCAGGGCTCTATCTACTTATGGAGCTGGAGTGGTACGAGGGCGTTGCGCCAGGGGAGGAAGAAGGAGGTGCCTGCTGTGATCCTGGCTGAACTGCAGTGGTCCAACACAGACATCCCGTACCTGTCTCTAAACACCTGCCCCGGCTTCGGCTACGTGGTGTGTGGAGATGAGAAAGGCCGGCTGTGGACGTATCACATCACAGACCTTGCGAAGGCCAACTTCAAGAGTGGAAAAGCAGTTCCTGCAACAGAGGTGCTGGAGTGGCCGTCTCCGGTGCGAAGCGGAGTCGGCCCAGTCGAGGGGCCGTCCATCAACAGCGTTGCCATGGATCCCGAGCTTCGTTATTTGGTTGCTTTAAGTGACAAGAACATGGTGGTGGTTTGGAAACGAGAATCTGCGCCATGAACTGATCCAGTTTTATGTTCCTACCATGTTTCAGGacgtgcttcagactttgtaaCCCGCCAACGCAAGTGCTAAAGGAAATAATGAGCACTGATGAGTCTTAACAAGAGACTAATTACTACTGGAGCATCACTAATGTCACATCATGTTCATGTGTCTGAGCTCCAGACAGAAAAGTGATTTATTCTAGACAGGATTTGTTGGGGTGATATCAATAGAtgaagtgttttaatttttaattgtgctttttattttttttattccaaatactgttttgttttgggaaaaaaaaaatgtacatatgtaaTGACTGTAAATTGTGTTTTCCTTCCATATgttacacacgtgtgtgtgttaatatctaTGTGAGACTGCACAACATTTTTCACCTTAtattatatcacacacacttacaaatcTATATAGTACTGTATAGTGAAAATGTGATGTATGCGATATGATTATTCCGTATATAACATGGTTTCATAATTCTAGTCATGGGAACTCACTAAGCTGAACTTTCAACACATCAGATCCAGCTCACAACTCATTATTAAACAATTCTTgactttca
>XM_034300485.1
CTGTAAGTAATGTGCGTTTTATTCTGAATGTAGCGGTATTTATCATTGTTAATGCAGATACAGAGTCTCAATAGCacggaaaaaatatatataattttcctTTAACTTTGTTTAAGCATCATGGAGAAGATTACAGAGAGAATACTGCTGGAGAAAGGCTCGCCTAAAACAAACAAGCTGGAGAAAATTACCAGTCTAAATCTCTCTCGTATGGGGTTAAAGAATCAAGATCTCTCCGTGCCCTTGTTGAATAAGCTCTCTGCGCTGGAGGAGTTAGATCTTTCCGGGAACATGCTGCAGAAGCTCCCAGCAGGACTGTCCCTTCCCCGCCTGAGGCTCCTAAACTTCTCCAACAACGACATGGAGGAAGTGACCTCGCTGGTGGCCCTGACTGGCCTGGAGGAGTTGCGGCTGGATGACAATTTGTATCTCACTGTCAGCGATGAGCACAAAGTGCTTTTCCTCTTGCCCAAATTGAAGATCATGAACGGGAAGGACATCAGCGCGACGGCCAACCACATCCGCTACGTGAACAGTGAGATCCTTAGGAAGCGGGTGATTGGTGTGTGGGAGAAGAACTTCAGTCTCCCTGATCCACCAACTTCACAAAGCTTGAATGAGCTTGAGAAGAAATTTGTTAATGCGGCATGCTTTCAAGTCAAATATGGCCCCAGTTCATTAAACGACTACACCAAAtggaggGTTGAAATGATTGCAAAAGAATATCTCCAATCGCTGATTGATCcagaaaaggaggaggaagacaTAACAGCAGAGACTCCTGTAAAAGAAGCTGGGTCTCCTTCCAAGAGAAAAATTCACGACCCCGAGGCAAACTGCGACGCCGAAACCCCCCGAAAGAGAAGGACGATAAACCAAGCGGCCACGCCAGAGGCCAGTCCACGCAAATCAAGCCGGTTAGCCAGCGCCGCTTCAGTCGAGGCGAGTCCGAGAAAATCCTCTCGGCTCCAGGGGACCCCGCAGAAATCTGATCCGGGTGTCTCAAGCCCAAGGTGCGTGAAAATGAACACTCCTGAGGCGGGTCAGAGGAAATCCAGTCGCCCACAAAACACCCCAAAAAAAGCAACAGTGGCACAGGTTGCCGTGACGCCCACCGCAAAGGGAGCAAAGAAAAATCTCAAAGTTCAGCTTACGACTCCGCAAGCATGCAGCTCCaccaaaacagaaaaagaaacaatctGCAAAGCGAGTAAATACCAAGTTCCAAAGGAGCCGGTCAGTCTGCAGCCTCTTCACGTCCTGCAGTGTCACAGTAAACATGACAGTCCGGAGGATTTCAGCACCCAGTTGTGGGCCTGCGCCTTCGAGCCCGCTCACAACAACAatgcaGGTGCCTGGGCACAGTCAGTGGCTACCTGTGGAGGGGAGACGGTGTGTGTGATAGACTGCGAGTCTGGCCATGTACTGAAGAAATACAAGGTCCCTGGTGAGGAGTTCTTTACGCTGGCCTGGACCACGGTGTTGATGGCGCGTGAGGGTGGCTGCGCTCGATCCTGCAGCATCCTCGCCGCAGGAGGAAAGAGGGGCATGGTGAAACTCATCCACCCCAGAGCCAACCTGGCATACGGCGAGTTCCGCGCCAGCCGCCGAGCCATATCGATGCTACGCTTCAGCCCGTGCCATTCCAGCTTCCTGTTCAcTGGCGCGTATGATAACAAGATCATCATGTGGGATATCGGCGGGCTGGACCGAGACTACAACTTCAAAACCAGTCAGCTGCTAGTAATGGAGACCTGCTCCACTCCACTGCACCTCTCCTTTCCACCCTGCTCCCCAGACACGCACCTTATCTCAGGCTGTGACAACGGGCTTTACAGCTTCGACATCCAGCTTAGCAAGAACACACAGAAGAGGGCGGAGGAGATGGAGATTGTATTTCCTGTGTACAAGAAGAGTAATAAGAGCAATAACTACCGCACTATCGATGGACTCAGCTTCCTTACAGAAGACATAATAGcaTCTAAGAGCCACATGCAGGGCTCTATCTACTTATGGAGCTGGAGTGGTACGAGGGCGTTGCGCCAGGGGAGGAAGAAGGAGGTGCCTGCTGTGATCCTGGCTGAACTGCAGTGGTCCAACACAGACATCCCGTACCTGTCTCTAAACACCTGCCCCGGCTTCGGCTACGTGGTGTGTGGAGATGAGAAAGGCCGGCTGTGGACGTATCACATCACAGACCTTGCGAAGGCCAACTTCAAGAGTGGAAAAGCAGTTCCTGCAACAGAGGTGCTGGAGTGGCCGTCTCCGGTGCGAAGCGGAGTCGGCCCAGTCGAGGGGCCGTCCATCAACAGCGTTGCCATGGATCCCGAGCTTCGTTATTTGGTTGCTTTAAGTGACAAGAACATGGTGGTGGTTTGGAAACGAGAATCTGCGCCATGAACTGATCCAGTTTTATGTTCCTACCATGTTTCAGGacgtgcttcagactttgtaaCCCGCCAACGCAAGTGCTAAAGGAAATAATGAGCACTGATGAGTCTTAACAAGAGACTAATTACTACTGGAGCATCACTAATGTCACATCATGTTCATGTGTCTGAGCTCCAGACAGAAAAGTGATTTATTCTAGACAGGATTTGTTGGGGTGATATCAATAGAtgaagtgttttaatttttaattgtgctttttattttttttattccaaatactgttttgttttgggaaaaaaaaaatgtacatatgtaaTGACTGTAAATTGTGTTTTCCTTCCATATgttacacacgtgtgtgtgttaatatctaTGTGAGACTGCACAACATTTTTCACCTTAtattatatcacacacacttacaaatcTATATAGTACTGTATAGTGAAAATGTGATGTATGCGATATGATTATTCCGTATATAACATGGTTTCATAATTCTAGTCATGGGAACTCACTAAGCTGAACTTTCAACACATCAGATCCAGCTCACAACTCATTATTAAACAATTCTTgactttca
>XM_034300486.1
TAAACCCGAGTGTACATCTGTAAGTAATCATCATGGAGAAGATTACAGAGAGAATACTGCTGGAGAAAGGCTCGCCTAAAACAAACAAGCTGGAGAAAATTACCAGTCTAAATCTCTCTCGTATGGGGTTAAAGAATCAAGATCTCTCCGTGCCCTTGTTGAATAAGCTCTCTGCGCTGGAGGAGTTAGATCTTTCCGGGAACATGCTGCAGAAGCTCCCAGCAGGACTGTCCCTTCCCCGCCTGAGGCTCCTAAACTTCTCCAACAACGACATGGAGGAAGTGACCTCGCTGGTGGCCCTGACTGGCCTGGAGGAGTTGCGGCTGGATGACAATTTGTATCTCACTGTCAGCGATGAGCACAAAGTGCTTTTCCTCTTGCCCAAATTGAAGATCATGAACGGGAAGGACATCAGCGCGACGGCCAACCACATCCGCTACGTGAACAGTGAGATCCTTAGGAAGCGGGTGATTGGTGTGTGGGAGAAGAACTTCAGTCTCCCTGATCCACCAACTTCACAAAGCTTGAATGAGCTTGAGAAGAAATTTGTTAATGCGGCATGCTTTCAAGTCAAATATGGCCCCAGTTCATTAAACGACTACACCAAAtggaggGTTGAAATGATTGCAAAAGAATATCTCCAATCGCTGATTGATCcagaaaaggaggaggaagacaTAACAGCAGAGACTCCTGTAAAAGAAGCTGGGTCTCCTTCCAAGAGAAAAATTCACGACCCCGAGGCAAACTGCGACGCCGAAACCCCCCGAAAGAGAAGGACGATAAACCAAGCGGCCACGCCAGAGGCCAGTCCACGCAAATCAAGCCGGTTAGCCAGCGCCGCTTCAGTCGAGGCGAGTCCGAGAAAATCCTCTCGGCTCCAGGGGACCCCGCAGAAATCTGATCCGGGTGTCTCAAGCCCAAGGTGCGTGAAAATGAACACTCCTGAGGCGGGTCAGAGGAAATCCAGTCGCCCACAAAACACCCCAAAAAAAGCAACAGTGGCACAGGTTGCCGTGACGCCCACCGCAAAGGGAGCAAAGAAAAATCTCAAAGTTCAGCTTACGACTCCGCAAGCATGCAGCTCCaccaaaacagaaaaagaaacaatctGCAAAGCGAGTAAATACCAAGTTCCAAAGGAGCCGGTCAGTCTGCAGCCTCTTCACGTCCTGCAGTGTCACAGTAAACATGACAGTCCGGAGGATTTCAGCACCCAGTTGTGGGCCTGCGCCTTCGAGCCCGCTCACAACAACAatgcaGGTGCCTGGGCACAGTCAGTGGCTACCTGTGGAGGGGAGACGGTGTGTGTGATAGACTGCGAGTCTGGCCATGTACTGAAGAAATACAAGGTCCCTGGTGAGGAGTTCTTTACGCTGGCCTGGACCACGGTGTTGATGGCGCGTGAGGGTGGCTGCGCTCGATCCTGCAGCATCCTCGCCGCAGGAGGAAAGAGGGGCATGGTGAAACTCATCCACCCCAGAGCCAACCTGGCATACGGCGAGTTCCGCGCCAGCCGCCGAGCCATATCGATGCTACGCTTCAGCCCGTGCCATTCCAGCTTCCTGTTCAcTGGCGCGTATGATAACAAGATCATCATGTGGGATATCGGCGGGCTGGACCGAGACTACAACTTCAAAACCAGTCAGCTGCTAGTAATGGAGACCTGCTCCACTCCACTGCACCTCTCCTTTCCACCCTGCTCCCCAGACACGCACCTTATCTCAGGCTGTGACAACGGGCTTTACAGCTTCGACATCCAGCTTAGCAAGAACACACAGAAGAGGGCGGAGGAGATGGAGATTGTATTTCCTGTGTACAAGAAGAGTAATAAGAGCAATAACTACCGCACTATCGATGGACTCAGCTTCCTTACAGAAGACATAATAGcaTCTAAGAGCCACATGCAGGGCTCTATCTACTTATGGAGCTGGAGTGGTACGAGGGCGTTGCGCCAGGGGAGGAAGAAGGAGGTGCCTGCTGTGATCCTGGCTGAACTGCAGTGGTCCAACACAGACATCCCGTACCTGTCTCTAAACACCTGCCCCGGCTTCGGCTACGTGGTGTGTGGAGATGAGAAAGGCCGGCTGTGGACGTATCACATCACAGACCTTGCGAAGGCCAACTTCAAGAGTGGAAAAGCAGTTCCTGCAACAGAGGTGCTGGAGTGGCCGTCTCCGGTGCGAAGCGGAGTCGGCCCAGTCGAGGGGCCGTCCATCAACAGCGTTGCCATGGATCCCGAGCTTCGTTATTTGGTTGCTTTAAGTGACAAGAACATGGTGGTGGTTTGGAAACGAGAATCTGCGCCATGAACTGATCCAGTTTTATGTTCCTACCATGTTTCAGGacgtgcttcagactttgtaaCCCGCCAACGCAAGTGCTAAAGGAAATAATGAGCACTGATGAGTCTTAACAAGAGACTAATTACTACTGGAGCATCACTAATGTCACATCATGTTCATGTGTCTGAGCTCCAGACAGAAAAGTGATTTATTCTAGACAGGATTTGTTGGGGTGATATCAATAGAtgaagtgttttaatttttaattgtgctttttattttttttattccaaatactgttttgttttgggaaaaaaaaaatgtacatatgtaaTGACTGTAAATTGTGTTTTCCTTCCATATgttacacacgtgtgtgtgttaatatctaTGTGAGACTGCACAACATTTTTCACCTTAtattatatcacacacacttacaaatcTATATAGTACTGTATAGTGAAAATGTGATGTATGCGATATGATTATTCCGTATATAACATGGTTTCATAATTCTAGTCATGGGAACTCACTAAGCTGAACTTTCAACACATCAGATCCAGCTCACAACTCATTATTAAACAATTCTTgactttca

Function

symbol description
lrwd1 Predicted to enable chromatin binding activity; methyl-CpG binding activity; and methylated histone binding activity. Predicted to be involved in chromatin organization and establishment of protein localization to chromatin. Predicted to act upstream of or within DNA replication. Predicted to be located in chromosomal region and nucleus. Predicted to be part of nuclear origin of replication recognition complex. Is expressed in blastomere. Orthologous to human LRWD1 (leucine rich repeats and WD repeat domain containing 1).

NR:

description
leucine-rich repeat and WD repeat-containing protein 1

GO:

id name namespace
GO:0071169 establishment of protein localization to chromatin biological_process
GO:0006260 DNA replication biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0031933 obsolete telomeric heterochromatin cellular_component
GO:0005664 nuclear origin of replication recognition complex cellular_component
GO:0005721 pericentric heterochromatin cellular_component
GO:0005737 cytoplasm cellular_component
GO:0035064 methylated histone binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008327 methyl-CpG binding molecular_function

KEGG:

id description
K24733 LRWD1; leucine-rich repeat and WD repeat-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922270.2 True 2976 mRNA 0.49 16 13843178 13852283
XM_034300485.1 False 2974 mRNA 0.48 16 13843178 13852167
XM_034300486.1 False 2886 mRNA 0.49 16 13843178 13852184

Neighbor

gene id symbol gene type direction distance location
bckdk bckdk,LOC107685622,LOC107681895,LOC106603456 coding downstream 1844 13823386 ~ 13841334 (-)
orai2 LOC108259892,LOC108428392,LOC103026696,LOC107685638,LOC107595471,LOC107710735 coding downstream 22347 13813104 ~ 13820831 (-)
ap2b1 ap2b1,LOC107681897,LOC101171688 coding downstream 29595 13778536 ~ 13813583 (-)
LOC113531678 NA coding downstream 29849 13813233 ~ 13813329 (-)
LOC113531537 rasl10b,LOC107685904,LOC107595522,LOC107681887,LOC107710719,LOC107587740 coding downstream 67140 13766176 ~ 13776038 (-)
alkbh4 alkbh4 coding upstream 2936 13855219 ~ 13858118 (-)
polr2j polr2j,LOC107587688,LOC107595521 coding upstream 6856 13859139 ~ 13862155 (-)
castor2 gatsl2,LOC107685562,LOC107595468,LOC107587690,LOC107681899 coding upstream 39929 13892212 ~ 13908457 (-)
LOC113531503 doc2b,LOC107685552,LOC107681901,LOC106603746 coding upstream 69457 13921740 ~ 13989353 (-)
LOC113531468 LOC108260357,LOC108428416,LOC107714896,LOC107691814,LOC107572424 coding upstream 205122 14057405 ~ 14070855 (-)
G386845 pex12,LOC107587685,LOC107681885,LOC107710733 non-coding downstream 15324 13809601 ~ 13827854 (-)
G386814 NA non-coding downstream 171038 13671223 ~ 13672140 (-)
G386763 NA non-coding downstream 319856 13523086 ~ 13523322 (-)
G386730 NA non-coding downstream 493975 13327325 ~ 13349203 (-)
G386705 NA non-coding downstream 520186 13293523 ~ 13322992 (-)
G386849 NA non-coding upstream 1554 13853837 ~ 13854055 (-)
LOC117596230 NA non-coding upstream 23734 13876017 ~ 13876806 (-)
G386868 NA non-coding upstream 58979 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding upstream 63081 13915364 ~ 13915497 (-)
G386873 NA non-coding upstream 78204 13930487 ~ 13930698 (-)
selenow1 LOC103044489 other downstream 162653 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 951883 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 2144634 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 2215492 11546309 ~ 11627686 (-)
G384960 NA other downstream 2759237 11078712 ~ 11083941 (-)
ccdc84 ccdc84 other upstream 1064379 14916662 ~ 14923390 (-)
nrgna NA other upstream 1166610 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 2030055 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 2511211 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 2905957 16758240 ~ 16763476 (-)

Expression


Co-expression Network