LOC113531503 (doc2b,LOC107685552,LOC107681901,LOC106603746)


Basic Information

Item Value
gene id LOC113531503
gene name doc2b,LOC107685552,LOC107681901,LOC106603746
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13921740 ~ 13989353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922275.2
ctcctctgtctctctccacttATTCCAGTGGCTGGTGCTTGGACAGCCTCAGTGCATTTTGTAGCGCTTTGAGCAGAGCTCTGAGGCAGACGGCATGCTTACAGCTTGCAGTACCACTCCGCTGGCACTCTCCATGTAGTTGCAACTGCTTActctcatctcacacacacacacacttacacacacacacacacactcacccggGCACCCACAGCATCGTGCTCCATCTCATCAGGGCTTTTCGTTTTCCTTTCTTCAGGGGCGTACTTTACACTTGGAGACCTTTAGAAGCTAGGTAGACAAGCAAGGTGGACattttttgtaagttttttttagaaaaaaaattcctgacTTTTCCTTGAGTCGTTTGCCGATCTCTACACCCGCCCCGCCTCCTGGGGGGCGTCGCCCGCACGGCCGCATGCATGACACAGCGCCGAGGCGAAAAGCCCACCATCAGCATCCAGGAGCACATGGCTATTGATGTGTGCCCGGGCCCCATCCAGCCCATCAAGCAGATCTCTGACTATTTCCCCCGCTACCCGCGGGGTTTCCCTCCCACAGCAGCCCCGGTCCTGAGGCGCGCCGGCTCGCAGcgctcttcctcctcatcctcgtcCTCCGCCCCGGCCACCGCCTCCTCAGCCACCGAAACGGGCCGAGAAAAGAACGACAACGATGACGACCTGGACCGGGCCTTCAGCGCCGCCTCCGCCTCTGCCTCCGCCTCCGCCCTGCCTCCACCCAGCAGGAAGGAGGAAGAGCCCGACATGGAGGGCTACGACTCGGACGACTCCACCACTCTTGGCACTCTGGACTTCAGCCTGTTGTATGATCAAGAGAACAATGCCCTGCACTGCACCATCAATAAAGCGAAGGGACTCAAACCCATGGATCACAACGGGCTGTCAGATCCCTATGTTAAACTGCACCTGCTACCTGGCGCCAGCAAAGCCAATAAGCTCCGGACCAAGACTCTGCGTAACACCCTCAACCCCGTATGGAGCGAGACGCTGACCTACTACGGCATCACCGATGAGGATATGGTCCGCAAAACACTCAGGATTTCCGTGTGTGACGAGGACAAATTCCGGCACAATGAATTCATCGGCGAGACTCGAATCCCCCTGAAAAAGCTCAAGCCCAACCAGACCAAGAACTTCTACAACTGCCTGGAGAAACAGCTGCCTATCGATAAGACGGACGATAAGTCTCTGGAGGAGCGCGGGCGCATCATGATCTCGCTGAAGTACAGCTCGCAGAAGTGTGGCCTGGTGGTGGGCATCATCCGCTGCGCTCACCTCGCTGCCATGGACGCAAACGGCTTCTCCGACCCTTACGTTAAGACATACCTGAAGCCGGATgagaacaaaaagtcaaagcACAAGACTGCTGTCAAGAAGAAGACCCTTAATCCAGAGTTTAATGAGGAGTTCTTCTATGAGATTAAGTATACAGAACTGAGCAAGAAAACCCTTGAGGTGACAGTGTGGGACTACGATATTGGCAAATCCAATGATTTTATAGGTGGAGTGTCTCTAGGCATCAATGCCAACGGCGAGCGTCTGAAACACTGGTTCGACTGTCTCAAAAACAAGGACAAGAAAATCGAGCGTTGGCACACACTCACTAACGAACTCCCTGGGTCAGGCTTCAATGACTGATGACTGACACGCCAGCACGTGTTCCCCTTCCTGCGAGAACGTAACGCTTGGCCTTTAATCGTCACCTCCAACACTACAGTCCAGAGATGGGTACCAAAGTGACCTCTTTTCCCGTAATCCCCAAATCTGTCCCTGTATGTACTTCCCCTGGTGTTGACCTTACTGTTCGATGTGGCTTTTGAGCTTCTTGGGCCAGCTTGTGTTGCTCTGAAGAGGTGTTTTCCCTCACAAATAGCAGGGGATCGTGTACAAACGTATAAATACTGTTCAACTTGCTGTTCTCTCTGCTCTTTCgattcattctgatgtttagtATGTGTTCAAGAATGTTGTTTACACGAGCTGTCGGTGGATGTTCAAGATCACTTCAGTTAGACCTTGAAAGATTTTGGACAGAGTTGATCAAGAAACTGTCGATTGTTTACATCTAGAATccagttcatttaaaaaaaaaaaaaaaaaaaagatgctacaTATGCTACAATATGATAgtgaaaaaaagacagtttgATGGATTTTGGatgttctatttttatttcattttatcctAGCAAAgtcttggtgtttttttttttaaattcacgtAAGAACCCAGTGTCAGTGCAGATTgatgaatgtgttttatttagccACACCATTGAGAATGTGATGCTGAAAAAGCGATGGACCAACGTCTACCCTGTTTACATATACAAACATTTGAAATGCCTCCAAGCAGAAATTCTACTCCAGGTAAGCGATTGTAGTTTTTGGACCATCCTCGAATCATTCTGGTAATGTACAGTAACGTAGGTGTAGATGTTTTCGAGCCCTGTCCGCATTCGTATGGTGCTACGAATCATTTCTTTAGACTGTTAGTTCAGATAGTAAATGATTCCTAGAACCACGCTGAATGtgagggtttaaaaaaaaatgtatgattatgtatgtatatttttttaaaatatcatttcttCATCCACTAAAGAGATCTTCTGgcacaatataaaaacatatttagcaTGCATTCAGTGGTTTTCTTAGTTGTTATTACTGGACTTTTAATACCTATTTATTTTCCAGctagtatttatatatttttttgtgtagtACACTTTAAATTGATGTGAACGTCCACTTTCGAGTAGTTTTAGAGCTCTAGGAATGTCGATATCTTCATATGCCCAGGCATGTGTATCTGAGGTCTTAGTACGTCGACCTTGCTCAGTAAGCACTCGGTGCAACAGCCAGACTTGTGACATCTTTTGTAATCTGTTGCCTTTGTACTCAAAGCTCTATGgcgtaaaaaaaaataaataaaaaatgcatgcaaTGTTCTTAAACGGTCATTAAAACTGACTTTGCTTAACGCCCTTTGATGGACTTTGCTTAATGTTTGATACTCTTCTCCTGTAAAAGAGAAACCGTCGACGCTAAAAGATCATGGAATGTCCGTCTTTTCTTCTTGGACGTTTTTTGTACCCTTGAACGCTGTCTCATTGCCTGTCCGGCTGCTCTATCTTCCGGAAAAACATGATCGCatgtaacaggaaaaaaaatcttgtctTGTTCTGTttccttgttcttttttttttttccaatctcaGGCGATTGTTTGCATTTCTAGTGGTTCTCTGATGAAATTTCTATGTTCCTACTCCTCTTTCACCATCACCTCTTGCACCGAATGGCAGAATTATCGTGCCTTTTCTTTTCTAACAGtgtagtttttctttttgcacCGCTCACTTTACAAGGATTCCTAGACGGATATTAGCTTTTAATATGGAAACTATATGATAACATCTGGCATATTTCTATTCCTGTCCGTGTCAGAATATTGTATCAGTGGGAATATTATCACTCaatgagacgtgtgtgtgtgtgtgtgtgtgtccttacaCTGTGTGTGGCTGGGGTGCTGGGTTCAAGTGGAAGACGTTTAAAGTGTGAAACTACACATTCTggtttctactttttttttttcttttttttttaaataacgcCGCAAATTAAACTAAAGATAAACTAGAGTTAGTACTATTTATAGAAATAGTAACCACACAACATATCATATACTCCAACACTTCCTAGTCTTCTTAATAAATGacacacaaattaattatttaataaaacatctgatatcatttttaacactttaactaTTACACGCTTTACTTAAGTTAGAATTTGAATCTACACTTAAAAAtccaattaaaaaataaaacaccagaaACCAGAATGTGTCATTTCCTTTatgtctgtttaaaaaaaaaaaaatgttcaagtaTTATACCTTGCGTGTTTTTTACTCTGGCGAAGGATGTGCTATTTATATATGTTCTGATTTGGAAAACCATGTCTAATAAAGTAGAGAACCAACCTATAA

Function

symbol description
doc2b Predicted to enable calcium ion binding activity and calcium-dependent phospholipid binding activity. Predicted to act upstream of or within chemical synaptic transmission; intracellular protein transport; and regulation of calcium ion-dependent exocytosis. Predicted to be located in membrane. Orthologous to human DOC2B (double C2 domain beta).

GO: NA

KEGG:

id description
K19917 DOC2B; double C2-like domain-containing protein beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922275.2 True 4032 mRNA 0.44 9 13921740 13989353

Neighbor

gene id symbol gene type direction distance location
castor2 gatsl2,LOC107685562,LOC107595468,LOC107587690,LOC107681899 coding downstream 13283 13892212 ~ 13908457 (-)
polr2j polr2j,LOC107587688,LOC107595521 coding downstream 59585 13859139 ~ 13862155 (-)
alkbh4 alkbh4 coding downstream 63622 13855219 ~ 13858118 (-)
lrwd1 lrwd1 coding downstream 69457 13843178 ~ 13852283 (-)
bckdk bckdk,LOC107685622,LOC107681895,LOC106603456 coding downstream 80406 13823386 ~ 13841334 (-)
LOC113531468 LOC108260357,LOC108428416,LOC107714896,LOC107691814,LOC107572424 coding upstream 68052 14057405 ~ 14070855 (-)
tmem248 tmem248,LOC107714897,LOC107572429,LOC107691774 coding upstream 85188 14074541 ~ 14085085 (-)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding upstream 104211 14093564 ~ 14103564 (-)
tmem132e tmem132e,LOC107691770,LOC107689377 coding upstream 181949 14171302 ~ 14409340 (-)
dtx2 dtx2,LOC108260301,LOC102304721,LOC101480294 coding upstream 591515 14580868 ~ 14591956 (-)
G386868 NA non-coding downstream 4939 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding downstream 6243 13915364 ~ 13915497 (-)
LOC117596230 NA non-coding downstream 44934 13876017 ~ 13876806 (-)
G386849 NA non-coding downstream 67685 13853837 ~ 13854055 (-)
G386845 pex12,LOC107587685,LOC107681885,LOC107710733 non-coding downstream 93886 13809601 ~ 13827854 (-)
G387048 NA non-coding upstream 349963 14339316 ~ 14340196 (-)
G387277 NA non-coding upstream 881166 14870519 ~ 14877458 (-)
G387434 NA non-coding upstream 1209253 15198606 ~ 15204665 (-)
LOC117596201 NA non-coding upstream 1231427 15220780 ~ 15234734 (-)
G387465 NA non-coding upstream 1292495 15281848 ~ 15282052 (-)
selenow1 LOC103044489 other downstream 241215 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 1030445 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 2223196 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 2294054 11546309 ~ 11627686 (-)
G384960 NA other downstream 2837799 11078712 ~ 11083941 (-)
ccdc84 ccdc84 other upstream 927309 14916662 ~ 14923390 (-)
nrgna NA other upstream 1029540 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 1892985 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 2374141 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 2768887 16758240 ~ 16763476 (-)

Expression


Co-expression Network