G387048


Basic Information

Item Value
gene id G387048
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14339316 ~ 14340196 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU458748
CATGTACGCAGAAGAGGGCGTGTAtactcatgtatgcggaagagggcctGTAtactcatgtatgtggaagagggcgtgtatactcatgtatgcggaagagggcctGTAtactcatgtatgcggaagagggcgtgTATACTCatgtatgcggaagagggcgtgtatactcatgtatgcggaagagggcgtgTATACTCATGTATCGCGGAAGAGGGCGTGTAtactcatgtatgcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU458748 True 235 lncRNA 0.50 2 14339316 14340196

Neighbor

gene id symbol gene type direction distance location
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding downstream 235752 14093564 ~ 14103564 (-)
tmem248 tmem248,LOC107714897,LOC107572429,LOC107691774 coding downstream 254231 14074541 ~ 14085085 (-)
LOC113531468 LOC108260357,LOC108428416,LOC107714896,LOC107691814,LOC107572424 coding downstream 268461 14057405 ~ 14070855 (-)
LOC113531503 doc2b,LOC107685552,LOC107681901,LOC106603746 coding downstream 349963 13921740 ~ 13989353 (-)
castor2 gatsl2,LOC107685562,LOC107595468,LOC107587690,LOC107681899 coding downstream 430859 13892212 ~ 13908457 (-)
dtx2 dtx2,LOC108260301,LOC102304721,LOC101480294 coding upstream 240672 14580868 ~ 14591956 (-)
gtf2ird1 gtf2ird1,LOC107600764 coding upstream 253589 14593785 ~ 14614182 (-)
clip2 clip2 coding upstream 276974 14617170 ~ 14652183 (-)
rasa4 rasa4,LOC108260369,LOC108428505,LOC107744328,LOC107709756,LOC107561580,LOC107691765 coding upstream 318806 14659002 ~ 14689482 (-)
upk3b NA coding upstream 353966 14694162 ~ 14702051 (-)
G386873 NA non-coding downstream 408618 13930487 ~ 13930698 (-)
G386868 NA non-coding downstream 422515 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding downstream 423819 13915364 ~ 13915497 (-)
LOC117596230 NA non-coding downstream 462510 13876017 ~ 13876806 (-)
G386849 NA non-coding downstream 485261 13853837 ~ 13854055 (-)
G387277 NA non-coding upstream 530323 14870519 ~ 14877458 (-)
G387434 NA non-coding upstream 858410 15198606 ~ 15204665 (-)
LOC117596201 NA non-coding upstream 880584 15220780 ~ 15234734 (-)
G387465 NA non-coding upstream 941652 15281848 ~ 15282052 (-)
G387467 NA non-coding upstream 942258 15282454 ~ 15282756 (-)
selenow1 LOC103044489 other downstream 658791 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 1448021 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 2640772 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 2711630 11546309 ~ 11627686 (-)
G384960 NA other downstream 3255375 11078712 ~ 11083941 (-)
ccdc84 ccdc84 other upstream 576466 14916662 ~ 14923390 (-)
nrgna NA other upstream 678697 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 1542142 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 2023298 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 2418044 16758240 ~ 16763476 (-)

Expression


Co-expression Network