rasa4 (rasa4,LOC108260369,LOC108428505,LOC107744328,LOC107709756,LOC107561580,LOC107691765)


Basic Information

Item Value
gene id rasa4
gene name rasa4,LOC108260369,LOC108428505,LOC107744328,LOC107709756,LOC107561580,LOC107691765
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14659002 ~ 14689482 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922374.2
AGCGTGTCGTCCTGAGGTAAATCTGTCTGTGCTGACCAGCGcgcgcgtgtatgtgtgtgccagCTGTGTGTCAGCTGCTTGACTGATATGAGTTGTGTAGATATTTGCCATGTTTACAATATCACCTGTTAGTGTATCCAAACACGCCGAGCTGTGAGAGCTGGTACACCGGTACAGATGGCCAAGAGGAACACTCTCTTCATCCGTATTGTGGAAGGCAAAAATTTGCCCATCAAAGATATAACCGGAAGCAGTGACCCATACTGCATCGTGAGAATTGACAACGAGGCCATTATAAGGACAGCAACAATATGGAAGACGCTGTCCCCTTTCTGGGGAGAGGAATACAATGTCCATGTTCCACCTTCCTTTCACAACGTGTCCTTGTATGTGATGGATGAGGACAATCTCAGCCGTGATGACGTCATCGGAAAAGTTTCGATTAGCAAAGAGGCACTCAGTGTCAAACCACAAGGTCTGGATGGCTGGATGAACCTGACTGAAATAGATCCCGATGAGGAGGTTCAGGGAGAGATTCACCTGCAGATTTCACTCCTGGGGGACAGCGACGTGCCACGCAAACTGCGCTGTCGAGTTCTGGAGGCCAGgGATCTTGCCAAAAAAGACCGCAATGGAGCATCGGATCCATTTGTCCGAGTCAGATATAATGGCAAAACCCACGAAAGTGCAGTGGTGAAAAAGTCTTGCTATCCACGCTGGAATGAGAGTTTTGAGTTCGAGCTGGATGACACTCTGGCCGACAGTCTGCTCAGCGTGGAGGTGTGGGACTGGGACCTGGTGAGCAGAAACGACTTCCTCGGAAAGGTCCTGTTCAACATTAACAGGCTTCAGTCAGCGCAGCAAGAAGAGGGCTGGTTTCGCCTGGGGCCTGACAAACCCAAACACAGCCAGTACGAaGGTACTCTGGGCTCCTTGCGGCTGCAGCTGCGTCTCAGAGACGAGACAGTCCTGCCGTCCAGCCATTACCAACCGCTCACCGAATTACTGTGCCAGTCCGTCGAGACTCACCTCAACGGCAACTGGCCTGATCTGATCATGCTAATTGATGAGACAACGACGTCTGAGAACAGGCAGGAAGTAGCCACTAACCTGGTGAAGCTCTTCCTGGGTCAAGGACTTATCAAGGAGTTCCTGGATGTGCTTTTCAAACTGGAGCTGGAAAAGAATACCGAACCCAACACCTTATTCAGGAGCAACTCTTTAGCTTCCAAGTCCATGGAGTCCTTTCTCAAGGTGGCCGGGATGCAGTATCTCCACAGGCTTCTGGGCCCCATCATCAATCGCATTTTTGAGGAGAAGAAGTACGTGGAACTGGATCCTAACAAGGTGGAACTGAAAGAAGCTGGGTGCACAGGACTGCATCGTCTACAGACAGAAGCCGATGTGATCCAGCAGAGCTCCAGCCTGCTCCAGTCATACCTGTCTGAGCTGATGGCTGCTATCCTGCAGTCCTCCTCTTACTGCCCACTGCTCCTCTGCCAGGCCTTCCAGCAGCTCTACCAGCGAGTACAAGCTCGTTTCCCAGACCCAGAGTACAGGAAAGTGAAGTTCATTGCTGTGACCAGCTTCCTGTGCCTACGCTTCATTTCTCCTGCCATCATGTCGCCTAAGCTCTTCCACCTGAGGGAGAAACACGCCGATGCCCGAACCAGCCGCACTCTTCTGCTCCTGGCTAAAGCTGTTCAGACCATTGGCAATATGGACACACTGGTATGTTGCTCTAAGGAGCCGTGGATGGTGCCACTGCAGCCTGCCATTCAGCAGGGTATCGCCCAACTCAAAGACTTCATCACCCGCCTGGTTAGCTGCCATGACTCGGAAGATCTCGGTTTGCAAACTCGTATGAGTCTCCAGTGCGGCTCAATGGAAAAAGAAGGCTTCCTCCTCCTGCATAAGACCAAAGACAAGTGCATTCTCATGACCTCTCCCTTTAAGAAATATTATGTCACGCTCAGCAAAGACATGCTGTCTTACTCACGGACACAGCATTCCAAGAAGAACTCGTTCATCTCCCTGCCCAAGATCCGTGCAGTGGAGAAGGTGGAGGAGAAGTGCTTCGGCAGTGCCAATGTCATGCAGATCATTTCGAGCGATGACTCCGGGCAGCAGGAGACACTCTACCTGGACTGCAAGAGTGTAAATGAACTGAATCAGTGGCTCTCAGCTTTACGGAAAGCGTGCAGtcacaacaccaacaccatgAGCTGTTATCATCCAGGCATCTACAAAGCTGACAGATGGAGCTGCTGCCACCAAAAGGAGAAAACAGACCCAGGCTGCGATAAGACCAGACATGGTGTCACCCTGCAGGAATGGTATGACCCGCTGGATCCAGACCTGGAAGCTCAACTGATTTACCGCCACCTGAGCAGTGTTCAACACACCATGAGTGATAAATATTATGAACTGATAAAGCAAGAAGCTGATGACGCAAATGCTGACCAAGATCCAAAGAAGGTGGACAGTATAACGAGACTTTTCACGATTCTCCAAGATCTGCATGACGCTCACACGGCACTAGAAGAGGAGGAACGTTTGAAAAACAAGAATGTTTTCCTCGAATTACAGACGTAAACAGAGGCTCcctaaaaaaagacaaaagatgtTTAATACTAGGTCAAACACTGACTTCATTTACAGGGTTTATTATGTGAACCTACtaaactgaaacacacagcaaGTCCAAATTTTGGAAAGGTTTGAGAGCAGGTTTGCTTTCCATGGTTCTTATTTGAGGTGAATGAGTTTTCATAATTAGTGGGCTGCCTTCGAAAACTCATATGCATCAAAGATAGGTCTAATAGTGTTAATAATAGTGGTTAATAGGTCTAATagtgttaataatattttacgAGTGTATAAGTGTCACAGCTAAATAAGGTCATTAGTGCGAAGGTTTGGCTGGTTATTCTTGCTTATAGGCACTTTATCACGCTTGTATATTATCATTGTGTTATTTAATCATACAAGCattactttttttcctttgtaaaTAAGCAAAGGGTCAACAAGTTTACAGTATAGactcttattttaaaatattacacaagtAGACTTCCTGTTTaccatttttatgtattttttga

Function

symbol description
rasa4 Predicted to enable GTPase activator activity; metal ion binding activity; and phospholipid binding activity. Predicted to act upstream of or within several processes, including cellular response to calcium ion; negative regulation of Ras protein signal transduction; and regulation of GTPase activity. Orthologous to human RASA4 (RAS p21 protein activator 4).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0046580 negative regulation of Ras protein signal transduction biological_process
GO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17630 RASA4, CAPRI; Ras GTPase-activating protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922374.2 True 3107 mRNA 0.48 21 14659002 14689482

Neighbor

gene id symbol gene type direction distance location
clip2 clip2 coding downstream 6819 14617170 ~ 14652183 (-)
gtf2ird1 gtf2ird1,LOC107600764 coding downstream 44820 14593785 ~ 14614182 (-)
dtx2 dtx2,LOC108260301,LOC102304721,LOC101480294 coding downstream 67046 14580868 ~ 14591956 (-)
tmem132e tmem132e,LOC107691770,LOC107689377 coding downstream 249662 14171302 ~ 14409340 (-)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding downstream 555438 14093564 ~ 14103564 (-)
upk3b NA coding upstream 4680 14694162 ~ 14702051 (-)
prkrip1 prkrip1,LOC107600793 coding upstream 15405 14704887 ~ 14709305 (-)
vps37d vps37d,LOC108428528,LOC103041644 coding upstream 30531 14720013 ~ 14745623 (-)
rabep1 rabep1,LOC107664300 coding upstream 68220 14757702 ~ 14777689 (-)
derl2 derl2,LOC106567674 coding upstream 99378 14788860 ~ 14791859 (-)
G387048 NA non-coding downstream 318806 14339316 ~ 14340196 (-)
G386873 NA non-coding downstream 728304 13930487 ~ 13930698 (-)
G386868 NA non-coding downstream 742201 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding downstream 743505 13915364 ~ 13915497 (-)
LOC117596230 NA non-coding downstream 782196 13876017 ~ 13876806 (-)
G387277 NA non-coding upstream 181037 14870519 ~ 14877458 (-)
G387434 NA non-coding upstream 509124 15198606 ~ 15204665 (-)
LOC117596201 NA non-coding upstream 531298 15220780 ~ 15234734 (-)
G387465 NA non-coding upstream 592366 15281848 ~ 15282052 (-)
G387467 NA non-coding upstream 592972 15282454 ~ 15282756 (-)
selenow1 LOC103044489 other downstream 978477 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 1767707 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 2960458 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 3031316 11546309 ~ 11627686 (-)
G384960 NA other downstream 3575061 11078712 ~ 11083941 (-)
ccdc84 ccdc84 other upstream 227180 14916662 ~ 14923390 (-)
nrgna NA other upstream 329411 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 1192856 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 1674012 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 2068758 16758240 ~ 16763476 (-)

Expression


Co-expression Network