rabep1 (rabep1,LOC107664300)


Basic Information

Item Value
gene id rabep1
gene name rabep1,LOC107664300
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14757702 ~ 14777689 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921627.2
tgcgcagtgcgcCTTGTTTCTACAATGACGTTGCCTAGTCTATGGTCGCTTGTTTTGTTTGGCACTCCCTAGTTTTGTTTCTTCGAGCCGACGATTAAAAGTCTGCCCCGGAGAAGCTATGGCCGAAGAGGCCTCGGGAGCCGCCCGGCCGCCTGAGCACGACGGGCTTCTCCAGCAGCGTATTGAGGATCTGGAGCAGGAGCGGGCTGAGATCCTCAAGCTCAAACAGCAGCTGGAGATGGAGTTCAACCAGAAGCGTGCCAAGTTCAAGGAGCTCTATTTGTCTAAAgaagAGGAGCTGAAGCGTCAGGCAGCATCTCTGGAGAGCGCCCAGGCAGAGCTGAGCCATGTGCAGACCCAGCTGGCTGAGGCCAAGGCCGAGATGGAGAACATCAAAGCCGTGGCCACCGTCTCGGAGAACACCAAGCAGGAGGCCATCGACCAGGTCAAGCAGCAGTGGCAGGAGGAGGTGGCGTCTTTACAGGCAATCATGAAAGACACGTTGCAGGAATACGAGGTGCAATTCCACCAACGACTAGAGCAGGAACGAACGCAGTGGGCACAGTATCGCGAAGGGGTCGAGAGAGAACTGGCCGAACTGCGGCGCCGCCTCTCTGAGGGCCAGGTggaggagaacctggagaacgAGATGAAGAAGGCCCAGGAGGATGCTGAGAAACTTCGCTCTGTGGTGATGCCGATGGAGCATGAAATCGCCGCCCTGAAGGCCAAGCTGACGAGCGCAGAGGAGCGGGTTAAAGAGCTCGAAGCAGCTAAGGTGAAGGAGCTCAACCATGTTCTCGAGGCTGAGAAGTCATGCCGGACTGATTTGGAGATGTATGTTGCTGTCCTCAATACCCAGAAATCTGTCCTCCAGGAGGATGCAGAAAAACTTCGGAAAGAGCTCCATGAAGTGTGTCATATGTTGGAGCTCGAGCGGCAGCAGCACAACCAGTTGAAGCACACTTGGCAGCGTGCCAACGACCAGTTCCTGGAGTCGCAGCGGCTGCTGATGCGAGATATGCAACGCATAGAGAGTGTGCTGAGCTCTGAACAGCTGCGCCAGGTCGAGGAGATGAAGAGGAGGGACCAGgaggaggatgagaaggAACGGCTTAGTCAGGCTCAAGAAGCTGGCGAGGATGATGGCGCAGACCACACGGATGCTGCAGAGGACTCTTTCTTCGGTCTTTCTATAGAGGAGTCCCACCTGAACCACAGCATCCACAGCTCTATACACTCGCTGGACGAGGACAGGCCAGACTCGTGCGACCCCTGTAGAGATGGCCTCCGTCGCGTCCAGTCCACAGACAGCTTGGGCTCTTCCGGAAACGCCCTGCAACCCCAAGGACTCAACCACAAAGCCAAATCAGCCAGCAACCTGGACGAGTCTGAGTTCGGCCCGCTGGTCGGGGCCGAGTACAGCCCTTCTGTGGCACCCTCTATCGGCTCCTTGCCTTTCCTCCTCACCAAGGACCAGGAGAAGGCCATCAAGGCCATGACACCCGAGCAGGAGGAGACGGCGTCACTGCTCTCGAGCATCTCACAGCGGCTCGATGCCACGTACCTGCCTCCAGCCGGCTACCGATTGGTCAGCGACTCGGAGTGGAACCTGCTTCAGCAGGAGCTGAAGAACGCAGGGAGGAAGTTGGGCCGGCGTTGTGACATGTGCTCCAATTATGAGAAGCAGCTTCAGGTCATTCAGGGGCAGGAGGCGGAGACGCGAGATCAGGTGAAGAAGCTGCAGGCCATGCTTCGGCAGGCCAACGATCAGCTAGAGAGGACGATGAACGAGAAGCAGGAGTTGGAAGACTCAGTGAAGCAGGGCCATGAAGAAACCAACACTAAGGTCTCAGCACTGATGCAGAAAGTCCAGGAGTCGGAGTCGATGCTGAGCGCGCTCCAGCAAGCCTTCAGCCAGGCCAAGAGGAACACCCAGGAACAGATGGCTGTGTTGCTGAAATCCCGGGAACAGGTGGCTGAGGAGCTGAGCAGGCTGCAGAGAGACAACGAGAGTCTACAGGGCAAACACAGACTTCACCTGACGTTGCAGCAGGAGGAGAACTTCCAGATGCCCACAACCACCCAGGAGCTCCAGTCTTTGGTGCAGCAGTACCGCGAGGACATCGTCTCAGTGCGCACGGCATCAGAGCACCTGGAAGAGAAGCTGAAGGCCGAGATCTTGTTCCTGAAGGAGCAGATCCAGGCAGAGCAGTGCCTCAAAGAGAACCTAGAGGACACACTACAGCTGGAGATCGAGGGATGCAAAGAGGAGAttgACATCCTGGAAGCGTCTTTCTCCAGCCTGAAGACGGAGTTGGAGCGAGTCAAGACTGAAAAAGAGCAGCTAGAGAGCAGCCTGGCGGAGAAGAGCCAAGCATTAGAGAGTGTCCAGGGTCTGAAAAGCAGCTTGGAGGAACAGCTCAAAGACGCACTCTCCAGCAAGACTGCCCTGGAGAGTCAAGTGTTCGATGAGAAGGACAAAGCACAGAGACTACAGACAGAGCTGGATGTCAGCGAGCAGGTCCAGAGAGACTTTGTCAAGCTTTCACAGACTCTGCAGgTCCAGTTGGAGAGAATCCGGCAGGCGGACTCTTTAGAGCGAATCCGCGCCATCCTCAATGACACCAACCTGACAGACATCAGCCAGCTTCCTGAGACATGATACTCCTCATCCAgcatccttctttctttccctttcttccttcacacacatacatccacacacactcacacacaaacacttttgtCCCTATGTTTCTCAGACCTCCCACCACCTCACTGCGTCTGCTCTGGGGCAGGACACTGGCGTGAGGCGACCTGGGCTTTTTAAAAACACTCCAATGtacctccaaaaaaaaaaaaaaaaaaaaaggctctgaCACGTGAGAGAACACTACGACTATTTACTACGGCTCTTAGAGCATGTGACTAAATGTGAaacgtctctgtgtgtctttcccATCATGCTTCACTCTGTTCTTGGCCTACTTTCTTACTTCTGCACCATCTGCTGAGCCTAAAAGATGGGGACTTATGAAGGATCTTGTACATACCTGTGTGTATAcagaatatatgtatattgcaTTAAGTTAATTTGGCCGTATGTGTGGCTTCCAGCCGTTTTCCTGCGTCCGTGACTCATTTCATAATTATAACTCGTGCTGTGTCAGTATTCCTCCCTTTTGTCcttttgtcctttttctttaaaagactTACCGGACAAATCGAGGACCTCCACCACTCAGTCAGGCGACTGCGATTTTTCAAAATCGTGGTCCGTTTGGTGGGTCTGATGACATTTGTGGTTTTCCTGTTCTCTATGTCTGAACCTGGCAATTCTTTCCATCATTGATTCACGACAAACTGAGATCTGCAGAGATGGCTTTAAGGTCGGACGGGAAGACACTAAGTGTGTAGCCGCTGCTATGTTCCAATGTCCAGTAACACTGTAAAGCTCAGTGAGGTGAGTACCATGTTCATCATTACTATATGAAAACTGTGCAGCATGAGATGAATTAATACTGCACACGAGGAATTCTGAACCAAAGGCAAGCGAAATGAGGTTTGATTTGAGTAGAAAAATATGACAATTTTGTCTGCTTCTTAAACACCTGAATTAGTTCGGGATCAtttcaggggtggacaaatcataaatttattcgTCTCTAATAAAGTCATGTTTTGAGGCTGAGAAACCTAAGAGgcttttttaacaaataaaaatttaaaaaagctaacttaaaaaaaagctaatgtaatgtaaaaacatATCCCAGGCTTGTTTGCTAGTTATGTAtgtaaattcaaaaaaaaaaaaatcagcatcgAGGAGAAG
>XM_026921628.2
tgcgcagtgcgcCTTGTTTCTACAATGACGTTGCCTAGTCTATGGTCGCTTGTTTTGTTTGGCACTCCCTAGTTTTGTTTCTTCGAGCCGACGATTAAAAGTCTGCCCCGGAGAAGCTATGGCCGAAGAGGCCTCGGGAGCCGCCCGGCCGCCTGAGCACGACGGGCTTCTCCAGCAGCGTATTGAGGATCTGGAGCAGGAGCGGGCTGAGATCCTCAAGCTCAAACAGCAGCTGGAGATGGAGTTCAACCAGAAGCGTGCCAAGTTCAAGGAGCTCTATTTGTCTAAAgaagAGGAGCTGAAGCGTCAGGCAGCATCTCTGGAGAGCGCCCAGGCAGAGCTGAGCCATGTGCAGACCCAGCTGGCTGAGGCCAAGGCCGAGATGGAGAACATCAAAGCCGTGGCCACCGTCTCGGAGAACACCAAGCAGGAGGCCATCGACCAGGTCAAGCAGCAGTGGCAGGAGGAGGTGGCGTCTTTACAGGCAATCATGAAAGACACGTTGCAGGAATACGAGGTGCAATTCCACCAACGACTAGAGCAGGAACGAACGCAGTGGGCACAGTATCGCGAAGGGGTCGAGAGAGAACTGGCCGAACTGCGGCGCCGCCTCTCTGAGGGCCAGGTggaggagaacctggagaacgAGATGAAGAAGGCCCAGGAGGATGCTGAGAAACTTCGCTCTGTGGTGATGCCGATGGAGCATGAAATCGCCGCCCTGAAGGCCAAGCTGACGAGCGCAGAGGAGCGGGTTAAAGAGCTCGAAGCAGCTAAGGTGAAGGAGCTCAACCATGTTCTCGAGGCTGAGAAGTCATGCCGGACTGATTTGGAGATGTATGTTGCTGTCCTCAATACCCAGAAATCTGTCCTCCAGGAGGATGCAGAAAAACTTCGGAAAGAGCTCCATGAAGTGTGTCATATGTTGGAGCTCGAGCGGCAGCAGCACAACCAGTTGAAGCACACTTGGCAGCGTGCCAACGACCAGTTCCTGGAGTCGCAGCGGCTGCTGATGCGAGATATGCAACGCATAGAGAGTGTGCTGAGCTCTGAACAGCTGCGCCAGGTCGAGGAGATGAAGAGGAGGGACCAGgaggaggatgagaaggAACGGCTTAGTCAGGCTCAAGAAGCTGGCGAGGATGATGGCGCAGACCACACGGATGCTGCAGAGGACTCTTTCTTCGGTCTTTCTATAGAGGAGTCCCACCTGAACCACAGCATCCACAGCTCTATACACTCGCTGGACGAGGACAGGCCAGACTCGTGCGACCCCTGTAGAGATGGCCTCCGTCGCGTCCAGTCCACAGACAGCTTGGGCTCTTCCGGAAACGCCCTGCAACCCCAAGGACTCAACCACAAAGCCAAATCAGCCAGCAACCTGGACGAGTCTGAGTTCGGCCCGCTGGTCGGGGCCGAGTACAGCCCTTCTGTGGCACCCTCTATCGGCTCCTTGCCTTTCCTCCTCACCAAGGACCAGGAGAAGGCCATCAAGGCCATGACACCCGAGCAGGAGGAGACGGCGTCACTGCTCTCGAGCATCTCACAGCGGCTCGATGCCACGTACCTGCCTCCAGCCGGCTACCGATTGGTCAGCGACTCGGAGTGGAACCTGCTTCAGCAGGAGCTGAAGAACGCAGGGAGGAAGTTGGGCCGGCGTTGTGACATGTGCTCCAATTATGAGAAGCAGCTTCAGGTCATTCAGGGGCAGGAGGCGGAGACGCGAGATCAGGTGAAGAAGCTGCAGGCCATGCTTCGGCAGGCCAACGATCAGCTAGAGAGGACGATGAACGAGAAGCAGGAGTTGGAAGACTCAGTGAAGCAGGGCCATGAAGAAACCAACACTAAGGTCTCAGCACTGATGCAGAAAGTCCAGGAGTCGGAGTCGATGCTGAGCGCGCTCCAGCAAGCCTTCAGCCAGGCCAAGAGGAACACCCAGGAACAGATGGCTGTGTTGCTGAAATCCCGGGAACAGGTGGCTGAGGAGCTGAGCAGGCTGCAGAGAGACAACGAGAGTCTACAGGGCAAACACAGACTTCACCTGACGTTGCAGCAGGAGGAGAACTTCCAGATGCCCACAACCACCCAGGAGCTCCAGTCTTTGGTGCAGCAGTACCGCGAGGACATCGTCTCAGTGCGCACGGCATCAGAGCACCTGGAAGAGAAGCTGAAGGCCGAGATCTTGTTCCTGAAGGAGCAGATCCAGGCAGAGCAGTGCCTCAAAGAGAACCTAGAGGACACACTACAGCTGGAGATCGAGGGATGCAAAGAGGAGAttgCGTCTTTCTCCAGCCTGAAGACGGAGTTGGAGCGAGTCAAGACTGAAAAAGAGCAGCTAGAGAGCAGCCTGGCGGAGAAGAGCCAAGCATTAGAGAGTGTCCAGGGTCTGAAAAGCAGCTTGGAGGAACAGCTCAAAGACGCACTCTCCAGCAAGACTGCCCTGGAGAGTCAAGTGTTCGATGAGAAGGACAAAGCACAGAGACTACAGACAGAGCTGGATGTCAGCGAGCAGGTCCAGAGAGACTTTGTCAAGCTTTCACAGACTCTGCAGgTCCAGTTGGAGAGAATCCGGCAGGCGGACTCTTTAGAGCGAATCCGCGCCATCCTCAATGACACCAACCTGACAGACATCAGCCAGCTTCCTGAGACATGATACTCCTCATCCAgcatccttctttctttccctttcttccttcacacacatacatccacacacactcacacacaaacacttttgtCCCTATGTTTCTCAGACCTCCCACCACCTCACTGCGTCTGCTCTGGGGCAGGACACTGGCGTGAGGCGACCTGGGCTTTTTAAAAACACTCCAATGtacctccaaaaaaaaaaaaaaaaaaaaaggctctgaCACGTGAGAGAACACTACGACTATTTACTACGGCTCTTAGAGCATGTGACTAAATGTGAaacgtctctgtgtgtctttcccATCATGCTTCACTCTGTTCTTGGCCTACTTTCTTACTTCTGCACCATCTGCTGAGCCTAAAAGATGGGGACTTATGAAGGATCTTGTACATACCTGTGTGTATAcagaatatatgtatattgcaTTAAGTTAATTTGGCCGTATGTGTGGCTTCCAGCCGTTTTCCTGCGTCCGTGACTCATTTCATAATTATAACTCGTGCTGTGTCAGTATTCCTCCCTTTTGTCcttttgtcctttttctttaaaagactTACCGGACAAATCGAGGACCTCCACCACTCAGTCAGGCGACTGCGATTTTTCAAAATCGTGGTCCGTTTGGTGGGTCTGATGACATTTGTGGTTTTCCTGTTCTCTATGTCTGAACCTGGCAATTCTTTCCATCATTGATTCACGACAAACTGAGATCTGCAGAGATGGCTTTAAGGTCGGACGGGAAGACACTAAGTGTGTAGCCGCTGCTATGTTCCAATGTCCAGTAACACTGTAAAGCTCAGTGAGGTGAGTACCATGTTCATCATTACTATATGAAAACTGTGCAGCATGAGATGAATTAATACTGCACACGAGGAATTCTGAACCAAAGGCAAGCGAAATGAGGTTTGATTTGAGTAGAAAAATATGACAATTTTGTCTGCTTCTTAAACACCTGAATTAGTTCGGGATCAtttcaggggtggacaaatcataaatttattcgTCTCTAATAAAGTCATGTTTTGAGGCTGAGAAACCTAAGAGgcttttttaacaaataaaaatttaaaaaagctaacttaaaaaaaagctaatgtaatgtaaaaacatATCCCAGGCTTGTTTGCTAGTTATGTAtgtaaattcaaaaaaaaaaaaatcagcatcgAGGAGAAG

Function

symbol description
rabep1 Predicted to enable GTPase activator activity and growth factor activity. Acts upstream of or within cilium assembly. Predicted to be located in early endosome. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in ciliated epithelial cell; otic vesicle; and retinal pigmented epithelium. Orthologous to human RABEP1 (rabaptin, RAB GTPase binding effector protein 1).

NR:

description
PREDICTED: rab GTPase-binding effector protein 1-like isoform X3

GO:

id name namespace
GO:0005096 GTPase activator activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K12480 RABEP1; Rab GTPase-binding effector protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921627.2 True 3838 mRNA 0.52 19 14757702 14777689
XM_026921628.2 False 3826 mRNA 0.52 18 14757702 14777689

Neighbor

gene id symbol gene type direction distance location
vps37d vps37d,LOC108428528,LOC103041644 coding downstream 12079 14720013 ~ 14745623 (-)
prkrip1 prkrip1,LOC107600793 coding downstream 48397 14704887 ~ 14709305 (-)
upk3b NA coding downstream 55651 14694162 ~ 14702051 (-)
rasa4 rasa4,LOC108260369,LOC108428505,LOC107744328,LOC107709756,LOC107561580,LOC107691765 coding downstream 68220 14659002 ~ 14689482 (-)
clip2 clip2 coding downstream 105519 14617170 ~ 14652183 (-)
derl2 derl2,LOC106567674 coding upstream 11171 14788860 ~ 14791859 (-)
foxr1 foxr1 coding upstream 146651 14924340 ~ 14927859 (-)
zgc:194948 NA coding upstream 151801 14929490 ~ 14931720 (-)
pou2f3 pou2f3,LOC107691752,LOC107600771,LOC107712933,LOC107556425 coding upstream 160363 14938052 ~ 14947598 (-)
oafb LOC108260356 coding upstream 174734 14952423 ~ 14959553 (-)
G387048 NA non-coding downstream 417506 14339316 ~ 14340196 (-)
G386873 NA non-coding downstream 827004 13930487 ~ 13930698 (-)
G386868 NA non-coding downstream 840901 13911262 ~ 13916801 (-)
LOC113531684 NA non-coding downstream 842205 13915364 ~ 13915497 (-)
LOC117596230 NA non-coding downstream 880896 13876017 ~ 13876806 (-)
G387277 NA non-coding upstream 92830 14870519 ~ 14877458 (-)
G387434 NA non-coding upstream 420917 15198606 ~ 15204665 (-)
LOC117596201 NA non-coding upstream 443091 15220780 ~ 15234734 (-)
G387465 NA non-coding upstream 504159 15281848 ~ 15282052 (-)
G387467 NA non-coding upstream 504765 15282454 ~ 15282756 (-)
selenow1 LOC103044489 other downstream 1077177 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 1866407 12807201 ~ 12891295 (-)
LOC113531030 NA other downstream 3059158 11691234 ~ 11698544 (-)
map1b map1b,LOC107597920 other downstream 3130016 11546309 ~ 11627686 (-)
G384960 NA other downstream 3673761 11078712 ~ 11083941 (-)
ccdc84 ccdc84 other upstream 138973 14916662 ~ 14923390 (-)
nrgna NA other upstream 241204 15018893 ~ 15026869 (-)
gltpd2 LOC108260402 other upstream 1104649 15882338 ~ 15888059 (-)
LOC113531235 NA other upstream 1585805 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 1980551 16758240 ~ 16763476 (-)

Expression


Co-expression Network