RNA id: XM_026921627.2


Basic Information

Item Value
RNA id XM_026921627.2
length 3838
RNA type mRNA
GC content 0.52
exon number 19
gene id rabep1
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14757702 ~ 14777689 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgcgcagtgcgcCTTGTTTCTACAATGACGTTGCCTAGTCTATGGTCGCTTGTTTTGTTTGGCACTCCCTAGTTTTGTTTCTTCGAGCCGACGATTAAAAGTCTGCCCCGGAGAAGCTATGGCCGAAGAGGCCTCGGGAGCCGCCCGGCCGCCTGAGCACGACGGGCTTCTCCAGCAGCGTATTGAGGATCTGGAGCAGGAGCGGGCTGAGATCCTCAAGCTCAAACAGCAGCTGGAGATGGAGTTCAACCAGAAGCGTGCCAAGTTCAAGGAGCTCTATTTGTCTAAAgaagAGGAGCTGAAGCGTCAGGCAGCATCTCTGGAGAGCGCCCAGGCAGAGCTGAGCCATGTGCAGACCCAGCTGGCTGAGGCCAAGGCCGAGATGGAGAACATCAAAGCCGTGGCCACCGTCTCGGAGAACACCAAGCAGGAGGCCATCGACCAGGTCAAGCAGCAGTGGCAGGAGGAGGTGGCGTCTTTACAGGCAATCATGAAAGACACGTTGCAGGAATACGAGGTGCAATTCCACCAACGACTAGAGCAGGAACGAACGCAGTGGGCACAGTATCGCGAAGGGGTCGAGAGAGAACTGGCCGAACTGCGGCGCCGCCTCTCTGAGGGCCAGGTggaggagaacctggagaacgAGATGAAGAAGGCCCAGGAGGATGCTGAGAAACTTCGCTCTGTGGTGATGCCGATGGAGCATGAAATCGCCGCCCTGAAGGCCAAGCTGACGAGCGCAGAGGAGCGGGTTAAAGAGCTCGAAGCAGCTAAGGTGAAGGAGCTCAACCATGTTCTCGAGGCTGAGAAGTCATGCCGGACTGATTTGGAGATGTATGTTGCTGTCCTCAATACCCAGAAATCTGTCCTCCAGGAGGATGCAGAAAAACTTCGGAAAGAGCTCCATGAAGTGTGTCATATGTTGGAGCTCGAGCGGCAGCAGCACAACCAGTTGAAGCACACTTGGCAGCGTGCCAACGACCAGTTCCTGGAGTCGCAGCGGCTGCTGATGCGAGATATGCAACGCATAGAGAGTGTGCTGAGCTCTGAACAGCTGCGCCAGGTCGAGGAGATGAAGAGGAGGGACCAGgaggaggatgagaaggAACGGCTTAGTCAGGCTCAAGAAGCTGGCGAGGATGATGGCGCAGACCACACGGATGCTGCAGAGGACTCTTTCTTCGGTCTTTCTATAGAGGAGTCCCACCTGAACCACAGCATCCACAGCTCTATACACTCGCTGGACGAGGACAGGCCAGACTCGTGCGACCCCTGTAGAGATGGCCTCCGTCGCGTCCAGTCCACAGACAGCTTGGGCTCTTCCGGAAACGCCCTGCAACCCCAAGGACTCAACCACAAAGCCAAATCAGCCAGCAACCTGGACGAGTCTGAGTTCGGCCCGCTGGTCGGGGCCGAGTACAGCCCTTCTGTGGCACCCTCTATCGGCTCCTTGCCTTTCCTCCTCACCAAGGACCAGGAGAAGGCCATCAAGGCCATGACACCCGAGCAGGAGGAGACGGCGTCACTGCTCTCGAGCATCTCACAGCGGCTCGATGCCACGTACCTGCCTCCAGCCGGCTACCGATTGGTCAGCGACTCGGAGTGGAACCTGCTTCAGCAGGAGCTGAAGAACGCAGGGAGGAAGTTGGGCCGGCGTTGTGACATGTGCTCCAATTATGAGAAGCAGCTTCAGGTCATTCAGGGGCAGGAGGCGGAGACGCGAGATCAGGTGAAGAAGCTGCAGGCCATGCTTCGGCAGGCCAACGATCAGCTAGAGAGGACGATGAACGAGAAGCAGGAGTTGGAAGACTCAGTGAAGCAGGGCCATGAAGAAACCAACACTAAGGTCTCAGCACTGATGCAGAAAGTCCAGGAGTCGGAGTCGATGCTGAGCGCGCTCCAGCAAGCCTTCAGCCAGGCCAAGAGGAACACCCAGGAACAGATGGCTGTGTTGCTGAAATCCCGGGAACAGGTGGCTGAGGAGCTGAGCAGGCTGCAGAGAGACAACGAGAGTCTACAGGGCAAACACAGACTTCACCTGACGTTGCAGCAGGAGGAGAACTTCCAGATGCCCACAACCACCCAGGAGCTCCAGTCTTTGGTGCAGCAGTACCGCGAGGACATCGTCTCAGTGCGCACGGCATCAGAGCACCTGGAAGAGAAGCTGAAGGCCGAGATCTTGTTCCTGAAGGAGCAGATCCAGGCAGAGCAGTGCCTCAAAGAGAACCTAGAGGACACACTACAGCTGGAGATCGAGGGATGCAAAGAGGAGAttgACATCCTGGAAGCGTCTTTCTCCAGCCTGAAGACGGAGTTGGAGCGAGTCAAGACTGAAAAAGAGCAGCTAGAGAGCAGCCTGGCGGAGAAGAGCCAAGCATTAGAGAGTGTCCAGGGTCTGAAAAGCAGCTTGGAGGAACAGCTCAAAGACGCACTCTCCAGCAAGACTGCCCTGGAGAGTCAAGTGTTCGATGAGAAGGACAAAGCACAGAGACTACAGACAGAGCTGGATGTCAGCGAGCAGGTCCAGAGAGACTTTGTCAAGCTTTCACAGACTCTGCAGgTCCAGTTGGAGAGAATCCGGCAGGCGGACTCTTTAGAGCGAATCCGCGCCATCCTCAATGACACCAACCTGACAGACATCAGCCAGCTTCCTGAGACATGATACTCCTCATCCAgcatccttctttctttccctttcttccttcacacacatacatccacacacactcacacacaaacacttttgtCCCTATGTTTCTCAGACCTCCCACCACCTCACTGCGTCTGCTCTGGGGCAGGACACTGGCGTGAGGCGACCTGGGCTTTTTAAAAACACTCCAATGtacctccaaaaaaaaaaaaaaaaaaaaaggctctgaCACGTGAGAGAACACTACGACTATTTACTACGGCTCTTAGAGCATGTGACTAAATGTGAaacgtctctgtgtgtctttcccATCATGCTTCACTCTGTTCTTGGCCTACTTTCTTACTTCTGCACCATCTGCTGAGCCTAAAAGATGGGGACTTATGAAGGATCTTGTACATACCTGTGTGTATAcagaatatatgtatattgcaTTAAGTTAATTTGGCCGTATGTGTGGCTTCCAGCCGTTTTCCTGCGTCCGTGACTCATTTCATAATTATAACTCGTGCTGTGTCAGTATTCCTCCCTTTTGTCcttttgtcctttttctttaaaagactTACCGGACAAATCGAGGACCTCCACCACTCAGTCAGGCGACTGCGATTTTTCAAAATCGTGGTCCGTTTGGTGGGTCTGATGACATTTGTGGTTTTCCTGTTCTCTATGTCTGAACCTGGCAATTCTTTCCATCATTGATTCACGACAAACTGAGATCTGCAGAGATGGCTTTAAGGTCGGACGGGAAGACACTAAGTGTGTAGCCGCTGCTATGTTCCAATGTCCAGTAACACTGTAAAGCTCAGTGAGGTGAGTACCATGTTCATCATTACTATATGAAAACTGTGCAGCATGAGATGAATTAATACTGCACACGAGGAATTCTGAACCAAAGGCAAGCGAAATGAGGTTTGATTTGAGTAGAAAAATATGACAATTTTGTCTGCTTCTTAAACACCTGAATTAGTTCGGGATCAtttcaggggtggacaaatcataaatttattcgTCTCTAATAAAGTCATGTTTTGAGGCTGAGAAACCTAAGAGgcttttttaacaaataaaaatttaaaaaagctaacttaaaaaaaagctaatgtaatgtaaaaacatATCCCAGGCTTGTTTGCTAGTTATGTAtgtaaattcaaaaaaaaaaaaatcagcatcgAGGAGAAG

Function

GO:

id name namespace
GO:0005096 GTPase activator activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K12480 RABEP1; Rab GTPase-binding effector protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458748 lncRNA downstream 417506 14339316 ~ 14340196 (-) True G387048
TU458569 lncRNA downstream 827004 13930487 ~ 13930698 (-) True G386873
TU458563 lncRNA downstream 840901 13911262 ~ 13916801 (-) True G386868
TU458564 lncRNA downstream 840901 13911262 ~ 13916801 (-) False G386868
XR_004577399.1 lncRNA downstream 880896 13876017 ~ 13876806 (-) True LOC117596230
TU459030 lncRNA upstream 92830 14870519 ~ 14877458 (-) True G387277
TU459094 lncRNA upstream 241328 15019017 ~ 15026847 (-) False nrgna
TU459229 lncRNA upstream 420917 15198606 ~ 15204665 (-) True G387434
TU459231 lncRNA upstream 420917 15198606 ~ 15204665 (-) False G387434
XR_004577373.1 lncRNA upstream 443091 15220780 ~ 15234734 (-) False LOC117596201
XM_026921590.2 mRNA downstream 12079 14720013 ~ 14745623 (-) True vps37d
XM_034300901.1 mRNA downstream 23440 14720013 ~ 14734262 (-) False vps37d
XM_026921589.2 mRNA downstream 48397 14704887 ~ 14709305 (-) True prkrip1
XM_026921657.2 mRNA downstream 55651 14694162 ~ 14702051 (-) True upk3b
XM_026922374.2 mRNA downstream 68220 14659002 ~ 14689482 (-) True rasa4
XM_026921635.2 mRNA upstream 11171 14788860 ~ 14791859 (-) True derl2
XM_026921575.2 mRNA upstream 139381 14917070 ~ 14923390 (-) False ccdc84
XM_026921638.2 mRNA upstream 146651 14924340 ~ 14927859 (-) True foxr1
XM_026921640.2 mRNA upstream 151801 14929490 ~ 14931720 (-) False zgc:194948
XM_026921639.2 mRNA upstream 151801 14929490 ~ 14931720 (-) True zgc:194948
XR_003403286.1 other downstream 842205 13915364 ~ 13915497 (-) True LOC113531684
XR_003403280.1 other downstream 944373 13813233 ~ 13813329 (-) True LOC113531678
XR_003403212.2 other downstream 3059158 11691234 ~ 11698544 (-) False LOC113531030
XR_004577405.1 other downstream 3130120 11621662 ~ 11627582 (-) False map1b
TU459046 other upstream 138973 14916662 ~ 14923384 (-) True ccdc84
XR_003403223.2 other upstream 1599896 16377585 ~ 16380787 (-) False LOC113531235
trnam-cau_50 other upstream 1653703 16431392 ~ 16431464 (-) True trnam-cau_50
trnam-cau_51 other upstream 1657509 16435198 ~ 16435270 (-) True trnam-cau_51
TU460427 other upstream 2188599 16966288 ~ 16970026 (-) False crx

Expression Profile