RNA id: trnam-cau_51


Basic Information

Item Value
RNA id trnam-cau_51
length 73
RNA type tRNA
GC content 0.60
exon number 1
gene id trnam-cau_51
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16435198 ~ 16435270 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCTCGTTGGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACACGGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459998 lncRNA downstream 98074 16334604 ~ 16337124 (-) True G388091
TU459986 lncRNA downstream 128072 16306509 ~ 16307126 (-) True G388082
TU459935 lncRNA downstream 217038 16217723 ~ 16218160 (-) True G388039
TU459934 lncRNA downstream 217550 16217018 ~ 16217648 (-) True G388038
TU459900 lncRNA downstream 292878 16141926 ~ 16142320 (-) True G388004
TU460340 lncRNA upstream 211705 16646975 ~ 16698779 (-) True G388359
XR_004577437.1 lncRNA upstream 251765 16687035 ~ 16689045 (-) True LOC117596255
TU460375 lncRNA upstream 322970 16758240 ~ 16763476 (-) True fxyd2
TU460398 lncRNA upstream 394478 16829748 ~ 16838048 (-) True G388408
TU460385 lncRNA upstream 408723 16843993 ~ 16850404 (-) True G388400
XM_026921813.2 mRNA downstream 54445 16363494 ~ 16380753 (-) True LOC113531235
XM_026921722.2 mRNA downstream 180093 16240163 ~ 16255105 (-) True wdr44
XM_034300433.1 mRNA downstream 214347 16218761 ~ 16220851 (-) True armh3
XM_034300834.1 mRNA downstream 219880 16214188 ~ 16215318 (-) True LOC113531237
XM_026921779.2 mRNA downstream 294833 16133103 ~ 16140365 (-) True si:dkey-17o15.2
XM_026921751.2 mRNA upstream 140508 16575778 ~ 16580533 (-) True chrm1b
XM_026922247.2 mRNA upstream 190683 16625953 ~ 16631364 (-) True LOC113531477
XM_026921725.2 mRNA upstream 223381 16658651 ~ 16668248 (-) True LOC113531175
XM_026921724.2 mRNA upstream 223381 16658651 ~ 16668212 (-) False LOC113531175
XM_034300825.1 mRNA upstream 259038 16694308 ~ 16703268 (-) True LOC113531479
trnam-cau_50 other downstream 3734 16431392 ~ 16431464 (-) True trnam-cau_50
XR_003403223.2 other downstream 54411 16377585 ~ 16380787 (-) False LOC113531235
TU459046 other downstream 1511814 14916662 ~ 14923384 (-) True ccdc84
XR_003403286.1 other downstream 2519701 13915364 ~ 13915497 (-) True LOC113531684
XR_003403280.1 other downstream 2621869 13813233 ~ 13813329 (-) True LOC113531678
TU460427 other upstream 531018 16966288 ~ 16970026 (-) False crx
LOC117596251 other upstream 620313 17055583 ~ 17057882 (-) True LOC117596251
TU460777 other upstream 855074 17290344 ~ 17328020 (-) True G388705
XR_004577381.1 other upstream 1102165 17537435 ~ 17544583 (-) False LOC113524239
TU460953 other upstream 1233098 17668368 ~ 17727818 (-) False LOC117596207

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) unassigned_transcript_1561 True 73 tRNA 0.60 1 NC_053135.1 4223852 ~ 4223924 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_1561 True 71 tRNA 0.56 1 NC_056709.1 1146971 ~ 1147041 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_2538 True 73 tRNA 0.60 1 NC_056720.1 2130069 ~ 2130141 (+)
mexican tetra (Astyanax mexicanus) trnam-cau_89 True 73 tRNA 0.60 1 NW_019172716.1 228464 ~ 228536 (-)