LOC113531479


Basic Information

Item Value
gene id LOC113531479
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16694308 ~ 16703268 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300825.1
TTCAGCTGTCACTTCCTCAACACAAGCTAAAGAGACACAGTGATGGAGTGTGCAGCCAGCATTTCAAAAgagaagaataagaaaaaaatggattcaaAGATGCTACCAAAAGTGGAAAAGAAGATGAGAGAAGAGGACAATGGAACATTGGAATCCTGGGTAAATCATGAGTTTGAGTCACTGTCTGTGCAGCCTATTCCTCATGACCACATCAAAagacatgcagAGAATTTTGGTGAACAtagttgcacatttgcactgcACCCTGATCCTGGACATACCTCAGCAGACCCTGAACCATTTACTCCTGAATTGGTTGAAAACTGTGCTGAGGATAGGAGCACGGATGAATACAGgtttctctGCCCTCATGCTGGTCAGTTTATGTGCAAACTGACCAAACTTGTGTTAGAGATGGAAGGGAAAGGGGAAGTGCTGTACAGAATAGTGTCCTGGGACAGCAGTCAATTGGATGAATTAGGCCAAAAGGAGCCTGCAGGGCCTCTGTACAATATTGACTGCCCTGAAGGTTCAATCCGTCACCTGCATCTTCCACACTGTGAGACCCGCAAAGACAAGGTTAAACTGACTGTGGCACATGTGCACAGTGGTAATGTGGAGACCATTCAGCCACTAACagtaacaaacacacatgtgATCATACACATTCAGAGTCTCTCCTGCTTTTGTTTAACATTGCGAAGGAATAGTTCTCCCATCAGAGCCCAAGTTCTACTGTTCTACAAAAAAGATACAGAGCACAGGAAGAGTAAACTGCACATCCACCTGTTGCCAGCAAATGTCTCAGTTAAAGAGGTGCAGAATCAACACAAGAGCTACACATACATTGAGACAACCTCCAATTGTGATCTGATCCCTGGTAAAAAATACAGACTATGCTATAAAACTACTGACGGTGATTGTGCACCCAAACCAGAGGGTGTGAAATTTCATCGTGACTATGGCCCCAACTTTCACCCTACATTTGAGGTGCTCTTAAATATCGAAGCTTCTGAAGTCACGTTAATTCTTTTGGATAAAAAAGGCAAGGAGGTGTGGACACCACCTGTAGTCTTGCTTACAGGTACAGGGGCAGACCCACTCAAAATGGAAATAATAGGTGCTGACTTTGTGGATCAACACAGAGAAACGCTCATTCGGAGATTTTCTTCAGTAATGGAGGTTGCAGACTGTCTAAAAAGCAAGCACATGATTACTGATGAAATGTACAGTAACATTCAGACAAAGTCAACACCTCAGGATAAAATGAGAGATCTGTACACATGTCTCAACTCAGCGGGAAGAGCTGTGAAACAAGAATTCTATGACATACTTGTAAAGAAgcacagtgtgttagtgcatgaTTTGATGTCTGTATCCGGTCAGGCTTAGTGAACAATTAATGGACTAAATCTCACACTCTGAGTAAATCACACACATAGTAAAGATCCATGTAGCTGTTaatacacgcacacacttctAACAACatgtgttttcatttctgtctttgtgtagcagaaataataatacataaatattttattatgattataattttcAGTTATGCTATTATGAATAtgttatataaaagtaaatcTTCCAAtcttattttgaaataatttccATATCTTAGCGATACAAAAAGGCTTACATTTGTGATTATTGTGATTATCATGTGATTATCATGtgattattatgtaattattctAGTATTTTTCCTTGATGAAGTACTTCATATAGACAGTTAATTATTGTAGAGATGATTATTGTTGATTTAATTAttgtatgttgtatattttaattgCATTATCTGAATTTTTAGAGCAGAGGTGTCAAACAACAAATCTCTTTTATTGATCAATAACATCACCAACTCCTCTTAAACGTGTTCATTggcatttatctgaaaggtacATTCTTAATGCATAAACGGATTGTAGGTTTCAccaaaacattcaaatgttcTAAGCTAGTTACTCATGTATGCATCTTGTTTCATTGCCTTTGCTTGAAATTATTATACTGAGAGTCTGAAAAGGGCTCTGTCAAATTTCTTCACTATAAGTGTGCTATGCTATGTTCCCATGTTCCTCGCCTATTTAACAGCACTGTTATGCTAAATATGTGTTTCATTTATGGTTAAGACATTGgccttctgatcggaaggttgagagttcaaatcccagcaccaccaagctgccactgctgggcccttgagcagggcccttgagcaaggcccttaaccctcaactgctcagtt

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300825.1 True 2260 mRNA 0.39 11 16694308 16703268

Neighbor

gene id symbol gene type direction distance location
LOC113531175 NA coding downstream 26060 16658651 ~ 16668248 (-)
LOC113531477 NA coding downstream 62944 16625953 ~ 16631364 (-)
chrm1b LOC108259847 coding downstream 113775 16575778 ~ 16580533 (-)
trnam-cau_51 NA coding downstream 259038 16435198 ~ 16435270 (-)
trnam-cau_50 NA coding downstream 262844 16431392 ~ 16431464 (-)
LOC113531483 NA coding upstream 8881 16712149 ~ 16741092 (-)
arhgap35b arhgap35,LOC108260288,LOC108437035,LOC107596120,LOC107734134,LOC107663410 coding upstream 40768 16744036 ~ 16756136 (-)
tmprss13b LOC108259860 coding upstream 66498 16769766 ~ 16780055 (-)
scn4bb LOC108259866,LOC108437026 coding upstream 85886 16789154 ~ 16803393 (-)
mpzl2b LOC108259864 coding upstream 105224 16808492 ~ 16818245 (-)
LOC117596255 NA non-coding downstream 5263 16687035 ~ 16689045 (-)
G388134 NA non-coding downstream 258929 16429227 ~ 16435379 (-)
G388091 NA non-coding downstream 357184 16334604 ~ 16337124 (-)
G388082 NA non-coding downstream 387182 16306509 ~ 16307126 (-)
G388039 NA non-coding downstream 476148 16217723 ~ 16218160 (-)
G388408 apoa4 non-coding upstream 126480 16829748 ~ 16838048 (-)
G388400 NA non-coding upstream 140725 16843993 ~ 16850404 (-)
G388406 NA non-coding upstream 242645 16945913 ~ 16951051 (-)
G388405 NA non-coding upstream 245707 16948975 ~ 16950536 (-)
G388440 NA non-coding upstream 275181 16978449 ~ 16989015 (-)
LOC113531235 NA other downstream 313521 16363494 ~ 16380787 (-)
gltpd2 LOC108260402 other downstream 806249 15882338 ~ 15888059 (-)
nrgna NA other downstream 1667439 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 1770918 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 3013783 13616122 ~ 13680525 (-)
fxyd2 NA other upstream 54972 16758240 ~ 16763476 (-)
crx crx other upstream 262698 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 587076 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 832159 17535427 ~ 17544583 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 965100 17668368 ~ 17727825 (-)

Expression


Co-expression Network