G388082


Basic Information

Item Value
gene id G388082
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16306509 ~ 16307126 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU459986
ACATGCACACAGTATCAGCCCACTGCATAATAAGTGCACCCAGGATCAGTTCACTGAATGAAAATGTGCCTAAAACATCAGCTCACTAAGTAATAAGGtactcacacacagaggatcAGCTCACTAAGTAATAAAGtactcacacacagaggatcAGCTCACTAAGTAATAAGCTACCCACATAGAGGATCAGCTCACTAAGTAATAAGGTACTCTCACACAGAGGATCAGCTCACTAAGTAATAAGGTACTCTCACACAGAGGATCAGCTCACTAAGTAataaggtacacacacacagaggatcaGCTCACTAAGTAataaggtacacacacacacacagaggatcaGCTCACTAAGTAataaggtacacacacacacacagaggatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU459986 True 390 lncRNA 0.42 2 16306509 16307126

Neighbor

gene id symbol gene type direction distance location
wdr44 wdr44,LOC107548463,LOC107700250 coding downstream 51404 16240163 ~ 16255105 (-)
armh3 c28h10orf76,cunh10orf76,zgc:63733,cssa12h10orf76,LOC107551381 coding downstream 85658 16218761 ~ 16220851 (-)
LOC113531237 LOC108260022,LOC108260023,LOC108259952 coding downstream 91191 16214188 ~ 16215318 (-)
si:dkey-17o15.2 LOC108260112 coding downstream 166144 16133103 ~ 16140365 (-)
si:ch211-284e13.5 LOC108260368 coding downstream 231217 16069205 ~ 16075292 (-)
trnam-cau_50 NA coding upstream 124266 16431392 ~ 16431464 (-)
trnam-cau_51 NA coding upstream 128072 16435198 ~ 16435270 (-)
chrm1b LOC108259847 coding upstream 268652 16575778 ~ 16580533 (-)
LOC113531477 NA coding upstream 318827 16625953 ~ 16631364 (-)
LOC113531175 NA coding upstream 351525 16658651 ~ 16668248 (-)
G388039 NA non-coding downstream 88349 16217723 ~ 16218160 (-)
G388038 NA non-coding downstream 88861 16217018 ~ 16217648 (-)
G388004 NA non-coding downstream 164189 16141926 ~ 16142320 (-)
G387921 NA non-coding downstream 188453 16116621 ~ 16118056 (-)
G387911 NA non-coding downstream 211351 16094948 ~ 16095158 (-)
G388091 NA non-coding upstream 27478 16334604 ~ 16337124 (-)
G388134 NA non-coding upstream 122101 16429227 ~ 16435379 (-)
G388359 NA non-coding upstream 339849 16646975 ~ 16698779 (-)
LOC117596255 NA non-coding upstream 379909 16687035 ~ 16689045 (-)
G388408 apoa4 non-coding upstream 522622 16829748 ~ 16838048 (-)
gltpd2 LOC108260402 other downstream 418450 15882338 ~ 15888059 (-)
nrgna NA other downstream 1279640 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 1383119 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 2625984 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 3415214 12807201 ~ 12891295 (-)
LOC113531235 NA other upstream 56368 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 451114 16758240 ~ 16763476 (-)
crx crx other upstream 658840 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 983218 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 1228301 17535427 ~ 17544583 (-)

Expression


Co-expression Network