LOC113531237 (LOC108260022,LOC108260023,LOC108259952)


Basic Information

Item Value
gene id LOC113531237
gene name LOC108260022,LOC108260023,LOC108259952
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16214188 ~ 16215318 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300834.1
GTAGCTCTCGACTCGGAAACAGAGCAACTGCACCATTAAACTTCCTGCTGTAACGGACTAAAACAGGGGGAATATATGTGTTTTTAGACAGAGGACATTTTAATCACGGGGTTTAAACTGTAATGaggtaaatatgaatatgagccGCTCTGAAATGTGGACACACttcagctaaagcagcagatatatttatatgagGAACAGAAAAGgatttTATTAGTTTGAATCtacagaaagagataaagatggCGACTGCAAGCAATGAGTTTAAACTCATTGGTCCCAGTGATATAGAGTGGTATAATCCCTCTGCTGTCACTCTCTCATGTCGTCTGTCTCCTGAAATCAGTGCTGTTAACATGGAGATCCGGTGGTTTAAGGGGACagactgtgtttgtgtctatAAGAACAGACAGGTGACAGAGGGGAGAGGTTACGAGGGCAGAGTGAGTCTGTTCACTCAGGAGCTGGAGAGAggaaacgtctccttacagctGAGAGACTGTGAATGGTCAGATGAAGGACATTACCTGTGTCAGGTCACTGATGGAGACAGAACAGAGGAGATTACAGTATACATGGGTAAGTGTTCCTGACCTCCACACTGCATAAACTCCACATCATCATCTGTGCTTCTCATCTCAgtacatgaaacacacactcagtattcAGTATGAGGTTCAGTATACAGGCTGCTAATGTGGAGTGAAGTTCATTTTAGTTGAATAAACAGTAACTGTGTTTTTCACTCTGCTCCACACCTGCACAAGGGCCTAAAAGCTGCAGCTTGtacaaatatgaattaaatagtgatttaaaatgtatttaattttatttatttacgaaTCAGAGCTTGGCTCAATGTCAGTTGAAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300834.1 True 876 mRNA 0.41 3 16214188 16215318

Neighbor

gene id symbol gene type direction distance location
si:dkey-17o15.2 LOC108260112 coding downstream 73823 16133103 ~ 16140365 (-)
si:ch211-284e13.5 LOC108260368 coding downstream 138896 16069205 ~ 16075292 (-)
hsd20b2 LOC108259770 coding downstream 181673 16021513 ~ 16032515 (-)
gnb2 gnb2,LOC108428986,LOC107663406,LOC107661206,LOC107746402 coding downstream 214553 15987177 ~ 15999635 (-)
LOC117596229 NA coding downstream 296249 15915101 ~ 15917939 (-)
armh3 c28h10orf76,cunh10orf76,zgc:63733,cssa12h10orf76,LOC107551381 coding upstream 3443 16218761 ~ 16220851 (-)
wdr44 wdr44,LOC107548463,LOC107700250 coding upstream 24845 16240163 ~ 16255105 (-)
trnam-cau_50 NA coding upstream 216074 16431392 ~ 16431464 (-)
trnam-cau_51 NA coding upstream 219880 16435198 ~ 16435270 (-)
chrm1b LOC108259847 coding upstream 360460 16575778 ~ 16580533 (-)
G388004 NA non-coding downstream 71868 16141926 ~ 16142320 (-)
G387921 NA non-coding downstream 96132 16116621 ~ 16118056 (-)
G387911 NA non-coding downstream 119030 16094948 ~ 16095158 (-)
G387900 LOC108260367,LOC108427482 non-coding downstream 131425 16080215 ~ 16082763 (-)
G387897 si:ch211-284e13.4,LOC108260367,LOC107663370,LOC107599204,LOC107746440,LOC105906577,LOC107661201,LOC108427482 non-coding downstream 136177 16077186 ~ 16078011 (-)
G388038 NA non-coding upstream 1700 16217018 ~ 16217648 (-)
G388039 NA non-coding upstream 2405 16217723 ~ 16218160 (-)
G388082 NA non-coding upstream 91191 16306509 ~ 16307126 (-)
G388091 NA non-coding upstream 119286 16334604 ~ 16337124 (-)
G388134 NA non-coding upstream 213909 16429227 ~ 16435379 (-)
gltpd2 LOC108260402 other downstream 326129 15882338 ~ 15888059 (-)
nrgna NA other downstream 1187319 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 1290798 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 2533663 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 3322893 12807201 ~ 12891295 (-)
LOC113531235 NA other upstream 148176 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 542922 16758240 ~ 16763476 (-)
crx crx other upstream 750648 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 1075026 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 1320109 17535427 ~ 17544583 (-)

Expression


Co-expression Network