si:dkey-17o15.2 (LOC108260112)


Basic Information

Item Value
gene id si:dkey-17o15.2
gene name LOC108260112
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16133103 ~ 16140365 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921779.2
GTTGCACATTTCAGCTGTTGGAGCTTGTGCTATTTTGGGCTCCAGGCACGCGGGCTCGTTAATTCACACCACATGAGGGCGAAGCACTTCTATAGCAGCGTTCCCATGTAGTAGTTCAACACGTTCACTTTCGACGACGTGACGCGAGGAGCCCTGAGCTGTAGCCTGGGCGAGCTCTCGGTTTGACTCGTCTGCAAAAACCAAACGACATCTTGCTTTTGATCGCCTAAAGTTGCATAAGTGGCAGCGCGCGCGCCAAGAACCGGAGCACAAATGGGAGACAGCGAGTTTTCCGAGCCGATGGAAGAGTCTCAAGCCGACAACGGAACGGACAAAATTGACATGTCACTCGACGAGATCATCAAGCTGAATAAAAAAGAGCAGAAAGCAAACAGAGCTGCGAACAGGGCAAGAAGCAGGCGTGTTACGAACAGGAATAATGTACTGAAGAAGCTTAACCAGACACCACAGGCACGAAGAGGCCTCAGACGCGGTTCACTGCAGTATCAGGGGCCAATCAGGTCACGTGGTCTGAACAGGAGCAGAGGTTTGGGCAGACAGAGCGGCCTGAGTCCTCTTAACAGAGCTAATACTAAGacagGAGAGCAGCAAGGTCAAAGCACAGACTCAGTGAGAGGCTCGTTCCGTGGGcgaggaagagggagaggaagaggacgAGGAGGATTGAGCAGGGGAGCTTTGTCAGTGAGAGGTCAGCGAGTTCCCCAGAGAGGTGGAAGACCATTTGCATTAGACAGAGGGttcACTGCTATGAGAGGCACTGGCAAATTGGAAAGATATCAGAAAATAAGAAGTCAGGGAACTACATCTACTCCTGGGACAACATTAACAGTGTCACTGCCCAATGCAAAATCACCACCTGTGACTCAAGCGAGGCCTCAGCGGGGTGGTACAGTGTTGAGGGGCAGGTCATCTGAGGCAGTGAGCAGCAGGCCAACACCCAAAGGCATCCCTCTGCACTTCAATTACAAAGCAACCACCaaccagACTCAGCTGTCCCTGAATGAGCGCTTCACTAGTTTGAGGATGAGAGGGCGAGGCCCAAGATTAAACAGAGAAAGTGGGAGGGGTCGAGGGCGGGGACGAGGAAGAGGAGAGATTAGTGGAGGAAGAGGTGGAGGAAGGGGTGTGATAAAAGAAGGCCCAGCTATGacaagaggaggaagaggaagaggaagaggtggagggagagggagaggatcAGGCCGAACCGTCTTTCTCCAGTGATTCCAGTTGCATGACCTGAATGCAGTAATATTTCAATCACACTACAGATAGGGAAGGAAGGAACCCTAAGTAGGGCATGTGTGTCTTTACAATCGCAGGCTGGTGGATTGCTCTATTTTTTTACCATGAGATTGGAGAAGTTGTTTTATAACCGACAAGCCACAGTGTTAAAAGTTGACACTAATGTAATTTTAAGCCCTGATTTTTAAAGCTTGTATATGGGCTCACATTTGAATGTTCTTAGATTTGGACATCACACCAAGCCTCAAAATTCAAAGTGCCTTAACacttactgtaaataaatttttgttTACAAGGTTTATATTTGGGTGTTACCAGTCTTACAAAAGtgttatatatacaaaataaaaaatttataaaaaactAAT

Function

NR:

description
PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921779.2 True 1637 mRNA 0.48 9 16133103 16140365

Neighbor

gene id symbol gene type direction distance location
si:ch211-284e13.5 LOC108260368 coding downstream 57811 16069205 ~ 16075292 (-)
hsd20b2 LOC108259770 coding downstream 100588 16021513 ~ 16032515 (-)
gnb2 gnb2,LOC108428986,LOC107663406,LOC107661206,LOC107746402 coding downstream 133468 15987177 ~ 15999635 (-)
LOC117596229 NA coding downstream 215164 15915101 ~ 15917939 (-)
mogat3b mogat3,LOC108259936 coding downstream 319573 15803020 ~ 15813530 (-)
LOC113531237 LOC108260022,LOC108260023,LOC108259952 coding upstream 73823 16214188 ~ 16215318 (-)
armh3 c28h10orf76,cunh10orf76,zgc:63733,cssa12h10orf76,LOC107551381 coding upstream 78396 16218761 ~ 16220851 (-)
wdr44 wdr44,LOC107548463,LOC107700250 coding upstream 99798 16240163 ~ 16255105 (-)
trnam-cau_50 NA coding upstream 291027 16431392 ~ 16431464 (-)
trnam-cau_51 NA coding upstream 294833 16435198 ~ 16435270 (-)
G387921 NA non-coding downstream 15047 16116621 ~ 16118056 (-)
G387911 NA non-coding downstream 37945 16094948 ~ 16095158 (-)
G387900 LOC108260367,LOC108427482 non-coding downstream 50340 16080215 ~ 16082763 (-)
G387897 si:ch211-284e13.4,LOC108260367,LOC107663370,LOC107599204,LOC107746440,LOC105906577,LOC107661201,LOC108427482 non-coding downstream 55092 16077186 ~ 16078011 (-)
LOC117596269 NA non-coding downstream 84932 16043897 ~ 16048171 (-)
G388004 NA non-coding upstream 1561 16141926 ~ 16142320 (-)
G388038 NA non-coding upstream 76653 16217018 ~ 16217648 (-)
G388039 NA non-coding upstream 77358 16217723 ~ 16218160 (-)
G388082 NA non-coding upstream 166144 16306509 ~ 16307126 (-)
G388091 NA non-coding upstream 194239 16334604 ~ 16337124 (-)
gltpd2 LOC108260402 other downstream 245044 15882338 ~ 15888059 (-)
nrgna NA other downstream 1106234 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 1209713 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 2452578 13616122 ~ 13680525 (-)
garnl3 garnl3,LOC107700942 other downstream 3241808 12807201 ~ 12891295 (-)
LOC113531235 NA other upstream 223129 16363494 ~ 16380787 (-)
fxyd2 NA other upstream 617875 16758240 ~ 16763476 (-)
crx crx other upstream 825601 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 1149979 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 1395062 17535427 ~ 17544583 (-)

Expression


Co-expression Network