LOC113524239


Basic Information

Item Value
gene id LOC113524239
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17535427 ~ 17544583 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300507.1
CGCATTTACCCGCGCGAGCCGAGGTGCGTTACACGCAGAAGCACTCTTACGGATAAAACTTGTTAAATTAAGCTTTTTACACGCTATAACGCATCATTTACAGaCATTGAATGCAAAGGATGGCTGAAGAACAACGCTGTGCTGCCTTTATTGATGACATGAGGGACGAGCTTATCCAGAAATTTCACTCAGTGATGCCTCTGGCTGATAAGCTGTTGCAAATGAAGCATATCGATCAAGAGGCCTATGCAGATATTTCTGTACAAAGTACCAACCAAAATAAGATGAGAGAACTCTATAAGTCGTTAAACAACGCAGCAAGCAAAGCTGCATTTTATGAAGCCCTGCGCCACTTAGATTTTTACCTCTTTAAGGACCTGGAGGAGAAATACAGCAGAAAAGGCTCACAGAGAGCGGATAATGAAACCGGCACGAATCTTAAAGAACGATggcaaaaaaacagcaaaaaacatAGAACCAAATTTGAGGACCTCCTCAAAGATCCTGAACTGGAGAGCCTAGGAAACGGGAAACTTTTCCTGTGTGCAAAGAGTGAATACAAGATAGGAAGTGGAGCAGAAGGAACCCATGTATATATAGGAATGAGGGATGATGGTACTGAGGTAGCAGTTAAACGAATGATCAAGGATAACCATAAACAGCTGAAGGATGAGATGAACATACTGCGAGACCCAAAGCTGGAGCACAAGAACATCGTGAAATATCTAGATTTCACAGAAGACCGGCATTTTGATTACCTCTGTCTCCAACTCTGTGAGTATGATTTTGAAGActacaagaaaacaaaagaactggacCAGGATGCTTTGAAGAAAGTGACAAACGAAGTGCTTCTTGGATTGCAAGCCCTCCACAATGCTGGTATCATCCACCGAGACTTAAAACCCAGCAATATTTTaattgATGTAGAAGGAAACGTGAGATTAGCTGACTTTGGAATAAGCCGCTTTGTAAACCAAGGTGCAAGCACGGTGCACACCTCAAGAGCCGGTACCCGAGGCTGGGAGGCGACAGAGATCCTGAAAGGGAAGGCAGATGGAAGGTGTGGATACAAAACAAGCACCGACATTCAGGTGGCTGGAATGTTGGGGTATTACATCCTCTCTGGCGGTAATCATCCTTTCGGCACATCTTATGAAGTAGAAGATAATATTCGGAAAGGAAATTACCAACTGGATGAAAGAACTGATGTGGAAGCAAAAGATCTGATTGAGAAAATGATTGCACATGAACCACAAGACAGGCTGAGTGTCAAAGAGGCAGTAGAGCATCCTTATTTCTGGAACGATGATGGGAGAGATTCATTTTTGAGAATCATCGGCGACAACGAAGCCGTCCAGAATTACAAAGCACCAGATGCTAAGCTTCTTGAAGCTGTGGGAAAATACAAAAAGTTTTCTGAATGGAAATCTaagattacagatttaCAAAAACGTGAAATAAACATTCGAGATGATTTACTTGGCCTGCTGCGTTTTCTGCGTAACAGATTGGTGCATCAACAAGCCAAATTCTATGAAAACAACATGTATAAGGATTTGTTTCCAGAATTCTATATCAGCGCAAACCAGTTGGCCAAAGATATGGGTTGGAAATAGCAAGCTGCATCAGGGACATCATTTATGTTTTCATCTTTGACCTCCCCAGACTTCCCTTAGGCCAGTGTTGCAGCTTTTAACTATACATaccttttcactttcttttttttttttgcccaccaCCACCAGTATTTGTGGCAAAAATCTTCTCTGGGTGTGATTGCTAGTTCATCTTCCCATTTTTTTACTTGGTGTGGTAATTGTAGACTTGGATttggatattattttatatattttggatAGGACTTTAATTTGTGGTGAGATATTCAGAAGTCCAGATACTAATGGGGCGAGGTCTAATATGTTGTCTTTTAGGTTGATTTTAGAGCATATAATGGAgtttaagtgtttattttctagTCCATGCTTCTCGGCTAGATATGTCACACTGTattgaaaaatgaatttttttttttttattaaatagctAGTTTATGGTCACATCAGGTCACAattctttaacatttttaaaattttgatcATTTCAGAATGCATCT
>XM_034300508.1
CGCATTTACCCGCGCGAGCCGAGGTGCGTTACACGCAGAAGCACTCTTACGGATAAAACTTGTTAAATTAAGCTTTTTACACGCTATAACGCATCATTTACAGGAGCGAGAAAATCCGAAAGCGAAAAAGTTTTACTGGGATAAGGAAGTCAGAGaCATTGAATGCAAAGGATGGCTGAAGAACAACGCTGTGCTGCCTTTATTGATGACATGAGGGACGAGCTTATCCAGAAATTTCACTCAGTGATGCCTCTGGCTGATAAGCTGTTGCAAATGAAGCATATCGATCAAGAGGCCTATGCAGATATTTCTGTACAAAGTACCAACCAAAATAAGATGAGAGAACTCTATAAGTCGTTAAACAACGCAGCAAGCAAAGCTGCATTTTATGAAGCCCTGCGCCACTTAGATTTTTACCTCTTTAAGGACCTGGAGGAGAAATACAGCAGAAAAGGCTCACAGAGAGCGGATAATGAAACCGGCACGAATCTTAAAGAACGATggcaaaaaaacagcaaaaaacatAGAACCAAATTTGAGGACCTCCTCAAAGATCCTGAACTGGAGAGCCTAGGAAACGGGAAACTTTTCCTGTGTGCAAAGAGTGAATACAAGATAGGAAGTGGAGCAGAAGGAACCCATGTATATATAGGAATGAGGGATGATGGTACTGAGGTAGCAGTTAAACGAATGATCAAGGATAACCATAAACAGCTGAAGGATGAGATGAACATACTGCGAGACCCAAAGCTGGAGCACAAGAACATCGTGAAATATCTAGATTTCACAGAAGACCGGCATTTTGATTACCTCTGTCTCCAACTCTGTGAGTATGATTTTGAAGActacaagaaaacaaaagaactggacCAGGATGCTTTGAAGAAAGTGACAAACGAAGTGCTTCTTGGATTGCAAGCCCTCCACAATGCTGGTATCATCCACCGAGACTTAAAACCCAGCAATATTTTaattgATGTAGAAGGAAACGTGAGATTAGCTGACTTTGGAATAAGCCGCTTTGTAAACCAAGGTGCAAGCACGGTGCACACCTCAAGAGCCGGTACCCGAGGCTGGGAGGCGACAGAGATCCTGAAAGGGAAGGCAGATGGAAGGTGTGGATACAAAACAAGCACCGACATTCAGGTGGCTGGAATGTTGGGGTATTACATCCTCTCTGGCGGTAATCATCCTTTCGGCACATCTTATGAAGTAGAAGATAATATTCGGAAAGGAAATTACCAACTGGATGAAAGAACTGATGTGGAAGCAAAAGATCTGATTGAGAAAATGATTGCACATGAACCACAAGACAGGCTGAGTGTCAAAGAGGCAGTAGAGCATCCTTATTTCTGGAACGATGATGGGAGAGATTCATTTTTGAGAATCATCGGCGACAACGAAGCCGTCCAGAATTACAAAGCACCAGATGCTAAGCTTCTTGAAGCTGTGGGAAAATACAAAAAGTTTTCTGAATGGAAATCTaagattacagatttaCAAAAACGTGAAATAAACATTCGAGATGATTTACTTGGCCTGCTGCGTTTTCTGCGTAACAGATTGGTGCATCAACAAGCCAAATTCTATGAAAACAACATGTATAAGGATTTGTTTCCAGAATTCTATATCAGCGCAAACCAGTTGGCCAAAGATATGGGTTGGAAATAGCAAGCTGCATCAGGGACATCATTTATGTTTTCATCTTTGACCTCCCCAGACTTCCCTTAGGCCAGTGTTGCAGCTTTTAACTATACATaccttttcactttcttttttttttttgcccaccaCCACCAGTATTTGTGGCAAAAATCTTCTCTGGGTGTGATTGCTAGTTCATCTTCCCATTTTTTTACTTGGTGTGGTAATTGTAGACTTGGATttggatattattttatatattttggatAGGACTTTAATTTGTGGTGAGATATTCAGAAGTCCAGATACTAATGGGGCGAGGTCTAATATGTTGTCTTTTAGGTTGATTTTAGAGCATATAATGGAgtttaagtgtttattttctagTCCATGCTTCTCGGCTAGATATGTCACACTGTattgaaaaatgaatttttttttttttattaaatagctAGTTTATGGTCACATCAGGTCACAattctttaacatttttaaaattttgatcATTTCAGAATGCATCT
>XR_004577381.1
CGCATTTACCCGCGCGAGCCGAGGTGCGTTACACGCAGAAGCACTCTTACGGATAAAACTTGTTAAATTAAGCTTTTTACACGCTATAACGCATCATTTACAGaCATTGAATGCAAAGGATGGCTGAAGAACAACGCTGTGCTGCCTTTATTGATGACATGAGGGACGAGCTTATCCAGAAATTTCACTCAGTGATGCCTCTGGCTGATAAGCTGTTGCAAATGAAGCATATCGATCAAGAGGCCTATGCAGATATTTCTGTACAAAGTACCAACCAAAATAAGATGAGAGAACTCTATAAGTCGTTAAACAACGCAGCAAGCAAAGCTGCATTTTATGAAGCCCTGCGCCACTTAGATTTTTACCTCTTTAAGGACCTGGAGGAGAAATACAGCAGAAAAGGCTCACAGAGAGCGGATAATGAAACCGGCACGAATCTTAAAGAACGATggcaaaaaaacagcaaaaaacatAGAACCAAATTTGAGGACCTCCTCAAAGATCCTGAACTGGAGAGCCTAGGAAACGGGAAACTTTTCCTGTGTGCAAAGAGTGAATACAAGATAGGAAGTGGAGCAGAAGGAACCCATGTATATATAGGAATGAGGGATGATGGTACTGAGGTAGCAGTTAAACGAATGATCAAGGATAACCATAAACAGCTGAAGGATGAGATGAACATACTGCGAGACCCAAAGCTGGAGCACAAGAACATCGTGAAATATCTAGATTTCACAGAAGACCGGCATTTTGATTACCTCTGTCTCCAACTCTGTGAGTATGATTTTGAAGActacaagaaaacaaaagaactggacCAGGATGCTTTGAAGAAAGTGACAAACGAAGTGCTTCTTGGATTGCAAGCCCTCCACAATGCTGGTATCATCCACCGAGACTTAAAACCCAGCAATATTTTaattgATGTAGAAGGAAACGTGAGATTAGCTGACTTTGGAATAAGCCGCTTTGTAAACCAAGGTGCAAGCACGGTGCACACCTCAAGAGCCGGTACCCGAGGCTGGGAGGCGACAGAGATCCTGAAAGGGAAGGCAGATGGAAGGTGTGGATACAAAACAAGCACCGACATTCAGGTGGCTGGAATGTTGGGGTATTACATCCTCTCTGGCGGTAATCATCCTTTCGGCACATCTTATGAAGTAGAAGATAATATTCGGAAAGGAAATTACCAACTGGATGAAAGAACTGATGTGGAAGCAAAAGATCTGATTGAGAAAATGATTGCACATGAACCACAAGACAGGCTGAGTGTCAAAGAGGCAGTAGAGCATCCTTATTTCTGGAACGATGATGGGGGGTGGAATTCATGTTGAAAGTGACCAATCATAGGCGTGAAGACATGAACCAGTTTGCTCTCCATCCCCGCCCTCAAAGTGACAAAAATCAGTTTGACTTGTGCAAGCAAAGAGGCCCAATCAAAGCTATACCCAAGCAGCATTCCACTCACCTTGTTATTCGTTTCTTGTGCACAGTAACTTGTTATGCTCTCAAGTTTAAAATTTGCACATGAAAGTATTTTTGTGCTCATGCACCGTATCCTTGCATACACTGAATTTTGTCATTGATATGATGCTACATGTCTGTCCTTTTTTGCTTTGCATCTTTTGCTTTCttggtctgtctctctgttttctggCTCTGGCATTTGACTCTTTAAGTCTCTTTTCTGCTTTCCTGCCTGGGAATCAATGATAGAAGAATCAGAAGGCTTAGGAGAGATTCATTTTTGAGAATCATCGGCGACAACGAAGCCGTCCAGAATTACAAAGCACCAGATGCTAAGCTTCTTGAAGCTGTGGGAAAATACAAAAAGTTTTCTGAATGGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300507.1 False 2116 mRNA 0.40 9 17535427 17544583
XM_034300508.1 True 2168 mRNA 0.40 10 17535427 17544583
XR_004577381.1 False 1849 misc_RNA 0.43 8 17537435 17544583

Neighbor

gene id symbol gene type direction distance location
LOC117595671 LOC108262359,LOC108260034,LOC108262004,LOC108260038 coding downstream 9091 17520856 ~ 17526336 (-)
LOC113531111 LOC108262359,LOC108262004,LOC108260034,LOC108260038 coding downstream 20309 17506787 ~ 17515118 (-)
LOC113531290 LOC108260034,LOC108262004,LOC108260038 coding downstream 52464 17467743 ~ 17482963 (-)
si:dkey-237j10.2 LOC108260035 coding downstream 82017 17449753 ~ 17453410 (-)
si:ch211-26b3.4 si:ch211-26b3.4,LOC108260033,LOC108442048,LOC107597246,LOC107756552,LOC107565423,LOC107741180 coding downstream 89121 17412935 ~ 17446306 (-)
uprt uprt,LOC107733222 coding upstream 82947 17627530 ~ 17634061 (-)
LOC113544925 NA coding upstream 146680 17691263 ~ 17694474 (-)
LOC117596209 LOC108262359,LOC108262004,LOC108260034,LOC108260038 coding upstream 199584 17744167 ~ 17749190 (-)
iqcd NA coding upstream 233878 17778461 ~ 17782652 (-)
tenm1 NA coding upstream 304764 17849347 ~ 17993048 (-)
G388754 NA non-coding downstream 123519 17410003 ~ 17411908 (-)
G388709 NA non-coding downstream 180068 17343079 ~ 17355359 (-)
G388698 LOC100304549,LOC100690460,LOC100219516,LOC106514001 non-coding downstream 250826 17282100 ~ 17284601 (-)
G388692 NA non-coding downstream 332435 17202786 ~ 17202992 (-)
G388440 NA non-coding downstream 546412 16978449 ~ 16989015 (-)
G388785 NA non-coding upstream 7612 17552195 ~ 17552678 (-)
G388781 LOC108443758 non-coding upstream 25032 17569615 ~ 17590207 (-)
G388814 NA non-coding upstream 57359 17601942 ~ 17620793 (-)
G388757 NA non-coding upstream 59943 17604526 ~ 17609434 (-)
G388824 NA non-coding upstream 76353 17620936 ~ 17641169 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other downstream 207407 17290344 ~ 17328020 (-)
crx crx other downstream 565401 16965966 ~ 16970026 (-)
fxyd2 NA other downstream 771951 16758240 ~ 16763476 (-)
LOC113531235 NA other downstream 1154640 16363494 ~ 16380787 (-)
gltpd2 LOC108260402 other downstream 1647368 15882338 ~ 15888059 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 123785 17668368 ~ 17727825 (-)
G389092 NA other upstream 330332 17874915 ~ 18277958 (-)
smarca1 LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799 other upstream 529129 18073712 ~ 18094773 (-)
las1l las1l other upstream 671634 18216217 ~ 18230970 (-)
fdx1b LOC108259761 other upstream 995747 18540330 ~ 18630565 (-)

Expression


Co-expression Network