si:ch211-26b3.4 (si:ch211-26b3.4,LOC108260033,LOC108442048,LOC107597246,LOC107756552,LOC107565423,LOC107741180)


Basic Information

Item Value
gene id si:ch211-26b3.4
gene name si:ch211-26b3.4,LOC108260033,LOC108442048,LOC107597246,LOC107756552,LOC107565423,LOC107741180
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17412935 ~ 17446306 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300803.1
CATCGGCCATGCTCCAGTCGCGCGCGCCTCCTGCACCTTTCCAATGGAATTCCACGTGCCGCACGGATTAACCCCCGTTCAGCTTGGATGATTCGCGTCAGGGACGTTCACGCGCTCCGGTGGCCATGGCTCTCGTGATGGACCCCATCAGCAAATGGAGCCCGAAGCAGGTGCTCCAGTGGAtgagaggactGGACGACTGTTTGCTGCagtatgtgcgtgtgtttgaAAGAGAGAGGATTTCTGGCGAGCAGCTGCTGCACATCACCCATCAGGAACTCGAGGAGCTCGGAGTCACGCGCATCGGCCATCAGGAGCTCATCCTCGAAGCAGTGGACCTGCTCTGTGCCCTGAACTATGGTCTGGAGACGGAGAACCTGCGCTCTCTCTCCCATAAACTCAACGCTTCAGCTAAAAACCTGCAGAACTTCATCACGGGCCGGCGGCGCGGCGGTCACTACGATGGCCGGGTGTGTCGACGGCTGCCCAACGACTTCCTCACAAGCGTGGTGGATCTGATCGGAGCCGCCAAGAACCTGCTGGCCTGGCTGGACAGGTCACCGTTTGTCAGTGTCACTGAGTATTCAGTGCTGAAGAACAACATTGTCCAACTCTGTCTCGAGTTAACCACCATAGTGCaacagGACTGTACCGTGTATGAAACGGAGAATAAAATACTCCATGTGtgtAAGACTCTGTCAGGAATCTGTGAGCACATCATCTCTCTGTCGTCTGATTCGTTGGTGTCGCAGTCCGCCCACCTGGAGGTCGTCCATCTCACCAACGTCTTGCCCAACGAGGGTCTGggCATGTATATTAAATCCACGTATGACGGACTACACGTGATCACCGGCACCACAGAGAACTCTCCCGCTGATCTCTGTAAGAAGATTCATGCAGGTGATGAGGTCATTCAGGTCAACTACCAAACTGTGGTGGGATGGCAGTTGAAGAACTTGGTGAATTCTCTGCGTGAGGATCCGAGTGGAGTCGTTCTCACGCTGAAGAAAAGACCCCAGAACACACTGAGCTCAGCGCCGGGCCTGCTCAAGAACACTCGCTGGAAACCCCTCgcactgcagCCCCTCTCCACCAGTCCGTGTAGCGAGTCTACCACGCCCCCCAGCACTCTGGGAGTCTCACCTGGTTTGGACACACCCTCAGGACATGATGTGTTTATACTGTCCCCTGCATATGGacacagggACGATGAGTTGGACCGGGCTGGTTTTGGTGTTTTCGGCTCTGAAGGGTTCTTCATGGATCAGGAGGCTTTAGTGGGACCTCACTTCCCCCTGCTGGACGATGAAATGGGCAGAAACGCTGGATTACGACGCCGAGACCGAACCCCAACACGGGGTGACCCCCGGCAGGTGTCTCACGCGTCCGAGTGGCTCGCTGAGCCTCAGGAGTCTGGAGTTTACAAGCGAGGAAGCAGAGACTCGGACTCCTCCCTCATGCGCTTCCTGAGCGACGACAGGATGCTGGTCTTACAGGAAGAGGTGGAGTTTTCCCAGCGCGACACTAGCCGGCGGACCAGGAAGAAGAGCCGCAATCCCAGCAGCCCCAGTTTTCCCATCAGCCCCTCCATGCTGGCCCCGCCCGTGCGGCTGGACTCAGGACCCCCGGATGGGCTGCCCTTCTCTCTGCCCGATACCAGCACTATGCCACATTACCATAGAGCCACAGACACGCTGCGAGCCGACACTGACAGGTATGCCGGTTCTGCTGGGGATCGACAAGCAGGCGCATCCATGAGGAAGTCAGTGCATTATGCCTCCTTAAGGACCAAGACCAAGAAGAAAAGCAGAGggtctCAGAGTAACTCGAGCAGGAGGCGTATTGCCTGTAAGGATCTGGGACATGGCGACTGTGAAGGCTGGCTGTGGAAGAAGAAGGACGCTTCAGGCTACTTCACccagaaatggaagaaatactGGTTCGTCCTCAAGGACTCGGATCTCTACTGGTACACCAACCAGAACGACGAGAAGGCAGAAGGCTTCATCAGTCTGCCGGAGTTTCGGATCGACAGAGCGATCGAATGCAGGAGGAAACAtgCCTTCAAGGCTTGCCATCCTAAAATTAAGAGCTTCTTTTTTGCAACGGATCACCTGGAGGAGATGAACAGGTGGATGAATCGTCTCGGCTTGGCTGCGATTGGCTACACTCCGGATGACCCAGTGCCCCGCCCAGATGAAGATTACTGGAGCGAGAGCGATCAGGAGGAGATCGATGGATCCATGACGCTCAAACAGGAGTCGACTTACCACTGCAATCCTGCCGCAAGCTCGTCCAGCGCGTTTGGCGAGCGCCATTTCTCCAGCGGCTCCACCTTCTCACACTCATCCGCCGAGGACTCGCACTCATCCTGTCGCTCCACCCATCGCGAGCGTGAGCGCCGCTCCTGGCAGGACCTGATCGAGACCCCCGTGGGCTCTTCAGGGCTTCACTACCTCCAGACGGGCGCGGGAGGGGACGGACGTGTACCGATCTCACCCGAGAGGTTGCGCCAGGCCACGCTGCCCGCCAGACGCCGACGCCCACCCCGAAACGACGGGCCGTTCCCGCTGACGGACAGCGAAGAGCCCCGCCCACGCGGCCACTCCCACAAACAGAGGAGTCAGAGCCTTCCGAGGCACCGCTCACACGGCACGCTGTGCCCTCGCACCCGGCTTcacgaggaagaggaggaggatgaggaggaggaaagtgtgtgtgaggtccgGCAGCGAGTGTGTGAGGCTCCGAAGCGTGTGTCTGAGGAAGCAGACCCACTGGAAGAGCTGTATCGCTCTCTGGAGCAAGCGAGCGTGTCTGCGTTCGGACACCAGCGGCCCTCCACGCGCCAGGAGTTCCGCCGCTCGTTCGTCAAGCGCTGCAACGACCCGGCCACTAACGAAAAACTCCACCGCATCCGCGCGCTCCGATCCACGCTAAAGgCTAAAGAAGGAGACCtggctgtgattggtcaggtgctGGATGACCCCTGCCTGACCTCTCGCAAGTTCCGCGAGTGGAAGCAGAGGAACCAAGAGCTCTTCCTGGATATCTGCGAGTTTAGCTCCGCCCCTCTGGAACTGCCCTCTGAGCCCGGTGACCTTTCACCTCTGTCTCCGACACTgctgatgcacacacactcctttataGAGACACacgtctgaaacacacacacacacacacacacatacactccaaCAGACGCCTACAGACATTCAGCGGTGTATCTGCAACGAACTCGGAGGACAACACACACGTTGGCACAGAAGACAACgtgaaaatgaaacactgtGGCCCCTCCTCTTCCCTCTGATTGGGTATCTGACCTTTAACTGACAGCTGACTGAGCCACTGTTTTTGCAAAGACTCCAGAACGTGTCCTGGACAAACACAccgcttcttcttcttcttcttctttcgtcAGACAGCTTCACAGTCGTGTatatcactgctcacacacgGATCTTCTCCACACCTTAAAGGAACAATTTAGCCAGAAATCAAACGTACACAATGTCCCTCTTACATCAGAAGTCGTCAATCGACCGAAACGTGTTGAGTGtctgaggctaatgtagctaatgtagctaacaaataataGAAGCTTGCTAATCTGTCAGATCCTGAACTCATGGCAGCTTCTGAATACAACTAGCCTACACTGTCTTCTTAaaaacatagctagctagctaagtaacTAAGGCTAACTAGCAATTCAGCAAATTAAAACTTAGCCGTATAAGCTAGCTACATACGTTGTAAGGTACAATTACATTAGCAAGGTGATAAACACGCTAATAATCAGAAAAACGTTAGACACTTCAAAGCAGCAGTTTTTAATCCACAAAATCTGTGTCATCAGCTTTCCAGAACTCTAGTGCAGAGAAGAGAATTATGGGATTGACCACATCAGGAAGAACACCCGCGACAATTCCCTTAAATTTGCCGAAGATAAGCAGCTGCCTCCCAAACGTCCGCACTTGGTAGGGAACTCGGTCGGCAGCGTCATAATCCCCATGAAATAGAATAatctttaggccacgcctcctaccaGATGATAGCTTAATGCTAGCTATAAGTTTCCCTGaactgttagctacattagcctgtAAAGTAGCTTCAGATACTTGGACTACGTTTGatgtaaattgtgtaaatttgatttttttttccttccacctTTCGATTTAACGAACTTCTCCATCCGTTCATCTGCTCGTATCATCTCCAGGATCTAAAGACGGCTTTATTTTTTCTCGTCTCTTTTCCtgctggagttttttttttcgattGTTTTCTTGGGActcgtttgtttgtttactcGTTTTTTCCCTTCCCTCGGGATGCTGCAGGACGAGCGCTCATGTAGCCATGGGCAACGGGCTTCACTCTGTTACCAAGCAACACCGCCCTACTGTGTTAACTCTCAGAGCatgcaagagtgtgtgtgtgagtgtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgtatttgagAGAGAGACTTAGAGAAGACTGATGAGACTGATGCACTTCCTGTAGGATCGCGAGCCTACGATGCGTCTGTAATCAAACTTGGGTTCTTTCGAATATTTAGAACATAGCTGAACTCCTGCATGGTTTAAAAGTTATTAATCTACGCCGAATGAGCTGATGAAGAGTCTGTATATAAGAGAAATATCCTTTGCCTAGCTGCATCCTCTGTTCAAAACTGTGAACTTTTAATTGTGAATGCAATCTTCTGGCACTGCAAAGACAGAAGCTTtctaattttcttttctaaaaaaaaaaaaacacaaaagactaAAGCTTTGCTTCTCTGGTATCCTGACTGTTTTTG

Function

symbol description
si:ch211-26b3.4 Predicted to act upstream of or within regulation of signal transduction. Predicted to be located in cytoplasm and membrane.

NR:

description
PREDICTED: connector enhancer of kinase suppressor of ras 2-like isoform X1

GO: NA

KEGG:

id description
K17536 CNKSR2, CNK2, KSR2; connector enhancer of kinase suppressor of Ras 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300803.1 True 4841 mRNA 0.53 23 17412935 17446306

Neighbor

gene id symbol gene type direction distance location
apool NA coding downstream 4723 17402784 ~ 17408212 (-)
nono nono,LOC103047741,LOC107672625,LOC107756548,LOC107741185,LOC107597250 coding downstream 84880 17323062 ~ 17328055 (-)
aifm1 aifm1 coding downstream 96693 17300524 ~ 17316242 (-)
glra4b glra4b,LOC108259905,LOC108442052,LOC107741187,LOC107565418,LOC107680382 coding downstream 113454 17289073 ~ 17299481 (-)
sptbn4a LOC108259765,LOC108414461,LOC107565414 coding downstream 140328 17242034 ~ 17272607 (-)
si:dkey-237j10.2 LOC108260035 coding upstream 3447 17449753 ~ 17453410 (-)
LOC113531290 LOC108260034,LOC108262004,LOC108260038 coding upstream 21437 17467743 ~ 17482963 (-)
LOC113531111 LOC108262359,LOC108262004,LOC108260034,LOC108260038 coding upstream 60481 17506787 ~ 17515118 (-)
LOC117595671 LOC108262359,LOC108260034,LOC108262004,LOC108260038 coding upstream 74550 17520856 ~ 17526336 (-)
uprt uprt,LOC107733222 coding upstream 181224 17627530 ~ 17634061 (-)
G388754 NA non-coding downstream 1027 17410003 ~ 17411908 (-)
G388709 NA non-coding downstream 57576 17343079 ~ 17355359 (-)
G388698 LOC100304549,LOC100690460,LOC100219516,LOC106514001 non-coding downstream 128334 17282100 ~ 17284601 (-)
G388692 NA non-coding downstream 209943 17202786 ~ 17202992 (-)
G388440 NA non-coding downstream 423920 16978449 ~ 16989015 (-)
G388785 NA non-coding upstream 105889 17552195 ~ 17552678 (-)
G388781 LOC108443758 non-coding upstream 123309 17569615 ~ 17590207 (-)
G388814 NA non-coding upstream 155636 17601942 ~ 17620793 (-)
G388757 NA non-coding upstream 158220 17604526 ~ 17609434 (-)
G388824 NA non-coding upstream 174630 17620936 ~ 17641169 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other downstream 84915 17290344 ~ 17328020 (-)
crx crx other downstream 442909 16965966 ~ 16970026 (-)
fxyd2 NA other downstream 649459 16758240 ~ 16763476 (-)
LOC113531235 NA other downstream 1032148 16363494 ~ 16380787 (-)
gltpd2 LOC108260402 other downstream 1524876 15882338 ~ 15888059 (-)
LOC113524239 NA other upstream 89121 17535427 ~ 17544583 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 222062 17668368 ~ 17727825 (-)
G389092 NA other upstream 428609 17874915 ~ 18277958 (-)
smarca1 LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799 other upstream 627406 18073712 ~ 18094773 (-)
las1l las1l other upstream 769911 18216217 ~ 18230970 (-)

Expression


Co-expression Network