sptbn4a (LOC108259765,LOC108414461,LOC107565414)


Basic Information

Item Value
gene id sptbn4a
gene name LOC108259765,LOC108414461,LOC107565414
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17242034 ~ 17272607 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300960.1
cacacacacacaccgttggCTCCTCCTACCCTGCCCCTTCTGTCTCAGCTCGACATTGGGACAGTGTAGTGAGCGGACGTGGCGCAGGACCCAGAGCatcttcataaacacacacattgccatttttttccttccatccCATCTGTTGGAGCCTCTTCACCATGTGAATGCATCAGTGATATTCTTTTTTTGGAGGCAGCCGGATACAGCAGTACCGTGTGTTTCCTTTCGGAACGCTCTGgcgcgcgtgtgtgtttttggagcGACGTCCTGACGTGTGGATACTGCAGCACTCTGCTGTGGAGTCGAACCTGGATGGCATGAGGACCCAGAGGAGCTCCAGGCTCTGAGCTCCCTATCATCATTGCTGCTATTGCTGCTGCTGATACTGCCAAGgatgctcATGCCTCGTGAGGGCGGGCGGGATGAGGCTCAGAAGCTgcacagaaaatggatgaaacACCAGGCCTTCATGGCCGAACTGGCTCGCAACAAAGAATGGCTGGCCAAAATCGAACAGgaGGGCAAGGAGCTGATCGAGGAGCAGCCTGAGCTTGGGCCCGTCGTGCACCAGAAGCTGAAGGAGATGAGGGAATGCTGGACACATCTGGAGAGCACCACCAAGGCCAAAGCTCGCCAGCTGTTCGAGACACAGAACCACAGAACCACAGATGTTCCACCGCACAGCCTTTTGGATCTGGACAAGCACCTCAGCATGCTCCAAGACGAGCCACCACATTCGTCACACTCCTCACAATCCTCACATGCAGCGtactccacacacaccagccCCTCGGCCAGCGCTGCCATCCTGAGCCCTCGAACCACATTTAGCCAGCAGCTGCAAAGGATACAGtcaatGGAAGCTCAGATGCAGCTCTATCCTGGTTTGATGCAGCTGAATTCCGACATTAGCGGACAGAGTGATGCAGACGGAGTCGACATGCTGCACCGTGGACCAATGGGTATCGAGGTCCAGGGCTCAGGGGGCGTGGCTGAGACACGAATTGTGCGTCTGATTGAGCCCCTGAAAGAAAGGAGGCGAATCCTTCTGGCCTCCAAAGAAATGCACCAAGTCACGCAGGACCTGGAAGACGAGATCGTGTGGATTCAGGAGCGATTACCGTTGGCCTCCTCTACAGAATACGGCACCAATATACAGAGCGTTCAGCAGCTTGTTAAAAACCACGAGGCTTTGCAGATGGAGATGCAGGCCAGAAAGGGGCGTGTCGAGGAGGTGCTGGAGAGAGCCGAGGCAGTCGCCGCCCTTCGCACTCCTGAGGTGGAGATCATCAGAGAGGGAGCGATGCATGTGAGGCAGCTGTGGGAGGTGCTACAGGTGGAGGTAGAGCGTCGTACAGTGATGCTGGATGCAGTAAGCCATGCCCAGCAATACTACACAGAGGCAGCGAAGGCGGAGTCATGGCTCAGTGGGCAAAAGCTTCACGTTCTCAATGAGGAGAATGGCCACGATGAAGCGAGCACATTAAGGCTACTGAAGGAGCAGTTGGCTTTAGAGCAGAAGGTGGAGAATTACGCAGAGACTGTGGGCTTCCTGTCACAGCAGTGCCGCCGCATGTTGGAGCTGGGACACCCTGACAGTGAGCAGATCACTAAGCAGCAGGCGCACATCGACCGGCTCTACGTCTCCCTGAAGGACCTGGTGGAGCAGAAGAAGACCAAGCTGGAGCAGCAGTACTGGCTCTACCAGCTGAAGAAGGAGGTGGAGGCTCTGGAGAAGTGGATCTCTGAGAGAGAGGCTGTAGCCAGCTCCACTGAGCTCGGCCAGGACCTGGAGCACGTCACGGCGCTGCAGGAGAGGTTCACCGAGTTTCGGGCCGAAACGAGCACCGCAGGTCAGAGGCAGATGGACTCGGTGAACAAGATGGTGAATGAGATGATCGACTGCGGCCACGCAGATGCTGCCACCATCGCCGAGTGGAAGGACGGCCTGAATGAGTCATGGGCCGACCTGCAGGAGCTGATGGAGACCAGAGCACAGATGCTCGCTGCCTCACACCAGCTCCACAAGTTCTTCACCAACTGCCAGGAGgtgctGTTGCAGATTGAGGGGAAGATGAGGCAGTTACCAGAGGTGCGTTCGTGTCAGGTCAGCACCGCCAACCCCGGCACACTACAGAGACTGCTACACTCCTTTGAACACTCTCTGCAGCTGCTTGTCACAcagGTGCGTCAGCTGCAAGAGAATGCCTCTCAGCTCCGTGCAATCTACGCTGGCGAGAAGGCCGACACCATCTTGGTCCGTGAGCAGGAAGTGATGCATGCGTGGAAGGAGCTCCTCGTGGCGTGTGAGGGCAGCCGTGTGCAGGTTACCACCGTGACAGACAAAATCCAGTTCTTTGCCATGGTGCGTGAGCTCAGCATGTGGACAGATGGGATCATGGGACAAATCGGCCCGGTCGAGGATGCACGGGACGTGGCCACTCTGGAGTGCATGATCTCCCAGCACCAAAACCTGAAGAGTAAAATGGAGAGCAAAAGCAAGAGTTTCATGCACTGTGTGGAGATGGGCAAGATGCTGCTCGCAGCACACAATCCTGCAGCTGAGGAGGTGAAGGAGAAGTTGGAGTATGTGATGGTGAAGCAGAAAGATCTGAATGATAAGTGGGAGCATCACTGGGAGAAACTCCAGCGCATGCAGCAGCGGCTACAGTCTGCACAAACAAGCAAGCCTGAAGGGACATGGCACACGACCAAGGAGTCGCTGAGCAGCGGTGGTGAGGCAGAGGGCGGGGCCGACGAGGTGGAGCAGCTGATTCGCCGACATGAAGCGTTCCGTAAGGCGGCATCTACGTGGAAGGAGCACTTCAGCTCCTTACGACAGGCAGAGAAATTGAAAGAAGAGCAAATCAAGCACTCCACCACCTCGTCTCTCCTCAACAGACAGATGTTTCCTCTGTCCTGCCTGGTGCCCAGCTCTTCCtcgtcctcctcttcctcatctcttTTCCGGAGCCCTCTGCAGGACATGCTCCATGAGCCCAAATCTGGTCCAGACCTTACACATACCCCACACACTTTTGCCCAGAGGCTCGGTTCCGCACTGAATCCCTATTCTCCAGTCATGAATGGCTCCCCCTACCACAGGCTCAACCAACAAGTCGGGGCGTTGGGCACAAACAGCTCCAGTCAAACTGGGTTAAACCAACAGGGTGTTTTTGGGGGGGACAGCTCGAGTTACACTGGCCTAAACCAAGTTGGCATGTTAGGTTCAGACAGCTCCAGCTACACTGGATTAAACCAACAGGGTGTCACAGGAGCTAATGGCCTGAACCCCCTCAGTGCTATGGGTGTGACTGAACCCAAGACCGCATTTGCCTGGCAGCAGCTCAAAGCTGACTTTCAGCCCAGGATCAACCACATGCACAAGGCTGTAGGTCCTCTGCTGGAGGCCCATGCTGGGCACCTGGTCCCAGTGGGTGTGCCACCGGGCACCGAGGCATCCCTGGAGCTGCTCCACGGGCGGCTACAGAGGGACCCTCGCGGCAGCCGCTCAGACCCACAGATGGACCATCTGCGCAGGGAGAGGGAGTACCGGCTCGGGCGCCACACCTCCAGTGAGCAGGAGATCCAGGCGCGGCTCAATGAGCTGCCCATGATCGTGCGCCAGGAGAGGCACCAGCGGCGCAGACTAGAGCGCCAGTCGTCCAGTGAGCATGAGGGCAGCGGCAGGCACAGACTTCAGAAACAGGACTCCAGTGACCAGGAGTCGGGGAAAGAAGGGTCAGACAAGAAGCAGACAGGGGAAAAACGCTCCACCATGGCTGAGATTGTTGAACAGGTGCAGGAGAGAGAAGCATGCCATgcaAGGGGAGAGGTGTATCGTCCTCCCAGCAGTCTCTCCGCCCCTGTCTCCCGTCTTGACCGGCCTCGAGCTCGTGATCGACCAAAACCACGCCGACGACCGCGTCCCAAAGAACCCGAGGAGACGCGGCGGTCACGGTCAGCACCGGCTCAGAGTGCGCCGAGCACGCCACAGCCGCCCACGCATACCGTTCACCAGGAGGGCTTCCTGTACCGCAAACATGAAGAGGAGGGCAAGGAAAAGAGCCCCAACAGCAAGTCGTGGGTGAATCTGTACTGCGTACTCAACAAAGGCGAGATCGGCTTCTATAAGGACGCCAGGAACACAACGACCCCATACAACGACGAGCCGCTCCTCAACCTAGCCATCTGTACCTTCGACACCACCAACGGctacaagaagaagaagaacgtCTTCATCTTGAGGAGTGAAACCGACGGGGACTATATCTTCCTGGCCAAAGACGAGgaggaCCTGAAGCGTTGGGTGAACAGCATAAACGCCAGCCTGAGTGAGATTGAGGAGATTGCCAAGTGGGAGAAAcccaccacctcctccaccgACCCCGACAAATCAGAACGCAAGGAGCGCTCCGAGGGGGCGGAGCCATCGGAGAAGTCGGAACGCTCGGATCGATCGGACAAGCGAGAGGGGGAGAAAAGCTCCGAAAGCTCAGAAAAGAGGGACACGttggagagagacaggatggagcgacgagggagggagagaggagagaaggagagaggagagagggagaggagagaaagaggagagaGGGCTCGACCCCCAGCAAAAAGGACTggtgattatgatgatgatgatgatgatgagaaagGGTAA

Function

NR:

description
PREDICTED: spectrin beta chain, non-erythrocytic 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300960.1 True 4666 mRNA 0.57 21 17242034 17272607

Neighbor

gene id symbol gene type direction distance location
micu2 micu2 coding downstream 3081 17227450 ~ 17238953 (-)
nova1 LOC108260001,LOC103044679,LOC108444022,LOC103394980,LOC107596194,LOC105901513,LOC107379798,LOC107655909,LOC107757545,LOC102216529,LOC107746355,LOC103138289 coding downstream 14968 17194315 ~ 17227066 (-)
alkbh6 alkbh6 coding downstream 55359 17181191 ~ 17186675 (-)
capns1a capns1,LOC107700232,LOC107548486,LOC107655908,LOC105909712,LOC105011036 coding downstream 61598 17171198 ~ 17180436 (-)
zgc:153990 LOC108260006 coding downstream 71873 17164803 ~ 17170161 (-)
glra4b glra4b,LOC108259905,LOC108442052,LOC107741187,LOC107565418,LOC107680382 coding upstream 16466 17289073 ~ 17299481 (-)
aifm1 aifm1 coding upstream 27917 17300524 ~ 17316242 (-)
nono nono,LOC103047741,LOC107672625,LOC107756548,LOC107741185,LOC107597250 coding upstream 50455 17323062 ~ 17328055 (-)
apool NA coding upstream 130177 17402784 ~ 17408212 (-)
si:ch211-26b3.4 si:ch211-26b3.4,LOC108260033,LOC108442048,LOC107597246,LOC107756552,LOC107565423,LOC107741180 coding upstream 140328 17412935 ~ 17446306 (-)
G388692 NA non-coding downstream 39042 17202786 ~ 17202992 (-)
G388440 NA non-coding downstream 253019 16978449 ~ 16989015 (-)
G388406 NA non-coding downstream 290983 16945913 ~ 16951051 (-)
G388405 NA non-coding downstream 291498 16948975 ~ 16950536 (-)
G388400 NA non-coding downstream 391630 16843993 ~ 16850404 (-)
G388698 LOC100304549,LOC100690460,LOC100219516,LOC106514001 non-coding upstream 9493 17282100 ~ 17284601 (-)
G388709 NA non-coding upstream 70472 17343079 ~ 17355359 (-)
G388754 NA non-coding upstream 137396 17410003 ~ 17411908 (-)
G388785 NA non-coding upstream 279588 17552195 ~ 17552678 (-)
G388781 LOC108443758 non-coding upstream 297008 17569615 ~ 17590207 (-)
crx crx other downstream 272008 16965966 ~ 16970026 (-)
fxyd2 NA other downstream 478558 16758240 ~ 16763476 (-)
LOC113531235 NA other downstream 861247 16363494 ~ 16380787 (-)
gltpd2 LOC108260402 other downstream 1353975 15882338 ~ 15888059 (-)
nrgna NA other downstream 2215165 15018893 ~ 15026869 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 17737 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 262820 17535427 ~ 17544583 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 395761 17668368 ~ 17727825 (-)
G389092 NA other upstream 602308 17874915 ~ 18277958 (-)
smarca1 LOC108260009,LOC103034185,LOC105028962,LOC106603320,LOC106567799 other upstream 801105 18073712 ~ 18094773 (-)

Expression


Co-expression Network