G388406


Basic Information

Item Value
gene id G388406
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16945913 ~ 16951051 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU460396
TGTGTAACATCTATTTATTACCACCATAGTATGAGAAATTTGGAAAATACAAAGATCAGCTTATTTAAATTTctgaataagaaaaataaacaggaacATGAGGTTATACATGTGTATcacgagagagcgagagaatcTACACGAAGAGAGCAAAACACTCCAAAAACTaaacgtgattttttttttttttgctacaatTTTTAACAAATGCCGatctgtggagaaaaaaaaaaaaaaaaaaaaacaaaacaaaaagaaagagtggacagagaaaagggaaaagagagaagagagagggacGTGAAGAACagtgagagtgaatgagagGCTGGTTTAGAGCGCCCCCCTGTGGCTGCCTGAAAGTTAGAACAGGAGGAGCAGGATCGGCAATcaccatggaaaaaaaataaaaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU460396 True 417 lncRNA 0.35 2 16945913 16951051

Neighbor

gene id symbol gene type direction distance location
gjd1a gjd1a,LOC108259863,LOC103027887,LOC107700241,LOC107548473,LOC108437049,LOC107746368,LOC107596136 coding downstream 18734 16908561 ~ 16927179 (-)
nfkbib nfkbib coding downstream 55400 16883148 ~ 16890513 (-)
tppp2 LOC108259867,LOC108437044,LOC107548470,LOC107700244,LOC107746373,LOC107693436 coding downstream 73899 16867453 ~ 16872014 (-)
tagln2 tagln,tagl,LOC107700246,LOC107548469,LOC107746372,LOC107710578,LOC107596134 coding downstream 84713 16853464 ~ 16861200 (-)
rnf214 rnf214 coding downstream 106533 16832882 ~ 16839380 (-)
LOC113531238 NA coding upstream 330 16951381 ~ 16955173 (-)
srsf7a LOC108260117,LOC108437054,LOC103046837,LOC105006373 coding upstream 48683 16999734 ~ 17007332 (-)
slc8a2a slc8a2 coding upstream 57473 17008524 ~ 17033818 (-)
nccrp1 nccrp1 coding upstream 84407 17035458 ~ 17039552 (-)
LOC117596250 LOC108259908,LOC108260251 coding upstream 95539 17046590 ~ 17052637 (-)
G388400 NA non-coding downstream 95509 16843993 ~ 16850404 (-)
G388408 apoa4 non-coding downstream 107865 16829748 ~ 16838048 (-)
G388359 NA non-coding downstream 247134 16646975 ~ 16698779 (-)
LOC117596255 NA non-coding downstream 256868 16687035 ~ 16689045 (-)
G388134 NA non-coding downstream 510534 16429227 ~ 16435379 (-)
G388440 NA non-coding upstream 27398 16978449 ~ 16989015 (-)
G388692 NA non-coding upstream 251735 17202786 ~ 17202992 (-)
G388698 LOC100304549,LOC100690460,LOC100219516,LOC106514001 non-coding upstream 331049 17282100 ~ 17284601 (-)
G388709 NA non-coding upstream 392028 17343079 ~ 17355359 (-)
G388754 NA non-coding upstream 458952 17410003 ~ 17411908 (-)
fxyd2 NA other downstream 182437 16758240 ~ 16763476 (-)
LOC113531235 NA other downstream 565126 16363494 ~ 16380787 (-)
gltpd2 LOC108260402 other downstream 1057854 15882338 ~ 15888059 (-)
nrgna NA other downstream 1919044 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 2022523 14916662 ~ 14923390 (-)
crx crx other upstream 14915 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 339293 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 584376 17535427 ~ 17544583 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 717317 17668368 ~ 17727825 (-)
G389092 NA other upstream 923864 17874915 ~ 18277958 (-)

Expression


Co-expression Network