rnf214 (rnf214)


Basic Information

Item Value
gene id rnf214
gene name rnf214
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16832882 ~ 16839380 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300750.1
TAGCTAACCTCGCTTTCTGATTGGATGTTTCACTCTCGAAGCGAGAATTTCAGTTTCTGACCTGACATCTGAAATAATTATAGGTAAATTCTGACTAGACAGGAACAACAGGCAATTTAACAAGTAATAATCCGTGAAACAACTATTAGTGTCGTGTTATTTTTCTTGTAATGCCATTCGACATATTTGAATCTCGCGAGATTTGACTCTACAAGGAACTCGCTCCACAAGACAGGGAGAGAATAATTGTTGTACCATTTTGGGAGGTGGTGGATGGTTTTTGGTTCAGTCCATATCCGTCGGAAGGTGGAGTGGACATACCGGAAGTGGAGCTGGATAACTCTGGGGTACTGAATACAATGCCAATCAATGGAGAGACCAGAGAGCAGGATGTTCAGACTGATGACTGGACGCAAGAAAAAAGTGTCAACACAAATGAAAGCTGGGAACACTTAATGagcGTCCTGGTGGAACAGAGTGCCGAGCTGGCGGAGGAGTGCGAGTCTCTGGAGAAACAGCAGGCTACTGAAGAGAGCGAGTGCAAGAGCCAAATCGAACGTTTGGAGAAGATGAGAGACGACAAGCAGCGGCAACATCGGGCTCTCCTAGATAAGATCGAGTCAGTGCAGGTGAAACTGGATCTAAACAGCAGCAAGACCACGCGGAAAAACTTCACCGCCAAAGTCGAGGAGCTCACCGCCGAGAGGGATCAAAAGCTGGAGGTGAAGAGAAGattgaCCCAAGAGTTGGAGGACATTGATGGGAGACTGAAGTTGCATAAGGAagagcaaagaaatgaaaaGCTTTCTTGGGAACAGGAGATTGCTGCTTTGCAGCATGAGATGGAGAGACTCTCTAGACAAGTTGAAGAATCCAATCAGGCAGCTCTGAAGGATGAGatcgcTGCTCTAGAGTCTCAGAAAGAGCTGGCAATTTCTCAGCTAGAAGACTGGATTGCAGAAGCTGAAAGATATCTAAACACTGTCAGGTCAGACACTTCACCTCAGAGCAGCCGGCATCGACTTGAATGGGAGAAAAATGTGGTGATGGTTCGTAACAGCTTGGGAAAACTACAGTCATTATATAATGAAAACCTTAAGCAGCTTCACAAAGGGCAGCAGCTGGACAGTTTGCCTAAAATCCCCCTGCCTCATCTCCCTCACATACCCATGatcGATTTGCTGAATTTCACATCGTATGCTGCGATCCGCCCCCCAGTGACCCAGCCTCAGTTTCACTCAGCCCAGAGATCCACCCCCCCTCCGCGTTCTGCACAAAACCCAGTGGCCTTCACGCCACACACGCTCGAACAGAACGTGGCCGTACCGAGGCTGGCCACGCCCACCGCCATCCGTGCCCCCACAATGCCCTACACTCATCCAACATACACATTACCGTACTCTGTCCCTACAGCCCAGGTGAGCGTCCCGGTTAGTCTCGCAGCAGCAATGGGAGCGTCACAAGGGGCAGGGCCAGTGGCCGCAGTACGAAACCCCGCCTCCCAGGTGCTTCCGTCAAACCCACAACCTGCAGGCAAGCTGGATAAGCTGCTGGAGATACTGGGCACGCAGTTCCCACAATGCACGAGAACTCAAATAATGGCTGTGCTGCAGCAGGTTAAGAGTGAGCGTGGCACTATGGCTGGCATGTCTGTAGAGGACATCAAACAGCAAGTGGAACAGAGACTCGCACAAAATGAACGCCCGCCTCCAGGCCCCATAGCGCCCCCTGCAGGCTCCAGACACTCACACAGAGGTCCTGTCCAGCCCGCGCTGTCCCCCCGTCCCTCTCTCCATGCTCCCAGCGCTCACGTCTTCCAGTCCCGAGTCCCACAGGCAGCTCCATCTGTGCGTaagctgtgtttaatgtgtcaGAACCATGTAGAACCCGGAACCCAATACCAAACAAACTGCCCTCATACGCTACACAAAGAGtgCATCAGTGTGTGGCTGCAGTCCAGCAAGAACAACTCCTGTCCCTTCTGTCCCAGCAAATAAACCCATGAGGCTCTTTCTTTCACGTCACATGACCATGTGTCGTTGCTGATTTAACACATCGTGCGCACAAGATCAGGTGATTTACAGATACAGTTCATCATCGACACTGAGACctgctgggattttttttttttcctttcgtTCCTTTTGTTATATTCTTTGATTTGTgattaatatttttagaaatatttttttacatgaatcCAAACAGGGGGAAAATATGTTATATGTTTATCTCTCTTCCTACAGAGAGATAAACATTGTAGAGCTCTCTGTAAttaaattatgtatattttctaataaatgataattaatA
>XM_034300751.1
CACTTAGCTAACCTCGCTTTCTGATTGGATGTTTCACTCTCGAAGCGAGAATTTCAGTTTCTGACCTGACATCTGAAATAATTATAGTGTTGTACCATTTTGGGAGGTGGTGGATGGTTTTTGGTTCAGTCCATATCCGTCGGAAGGTGGAGTGGACATACCGGAAGTGGAGCTGGATAACTCTGGGGTACTGAATACAATGCCAATCAATGGAGAGACCAGAGAGCAGGATGTTCAGACTGATGACTGGACGCAAGAAAAAAGTGTCAACACAAATGAAAGCTGGGAACACTTAATGagcGTCCTGGTGGAACAGAGTGCCGAGCTGGCGGAGGAGTGCGAGTCTCTGGAGAAACAGCAGGCTACTGAAGAGAGCGAGTGCAAGAGCCAAATCGAACGTTTGGAGAAGATGAGAGACGACAAGCAGCGGCAACATCGGGCTCTCCTAGATAAGATCGAGTCAGTGCAGGTGAAACTGGATCTAAACAGCAGCAAGACCACGCGGAAAAACTTCACCGCCAAAGTCGAGGAGCTCACCGCCGAGAGGGATCAAAAGCTGGAGGTGAAGAGAAGattgaCCCAAGAGTTGGAGGACATTGATGGGAGACTGAAGTTGCATAAGGAagagcaaagaaatgaaaaGCTTTCTTGGGAACAGGAGATTGCTGCTTTGCAGCATGAGATGGAGAGACTCTCTAGACAAGTTGAAGAATCCAATCAGGCAGCTCTGAAGGATGAGatcgcTGCTCTAGAGTCTCAGAAAGAGCTGGCAATTTCTCAGCTAGAAGACTGGATTGCAGAAGCTGAAAGATATCTAAACACTGTCAGGTCAGACACTTCACCTCAGAGCAGCCGGCATCGACTTGAATGGGAGAAAAATGTGGTGATGGTTCGTAACAGCTTGGGAAAACTACAGTCATTATATAATGAAAACCTTAAGCAGCTTCACAAAGGGCAGCAGCTGGACAGTTTGCCTAAAATCCCCCTGCCTCATCTCCCTCACATACCCATGatcGATTTGCTGAATTTCACATCGTATGCTGCGATCCGCCCCCCAGTGACCCAGCCTCAGTTTCACTCAGCCCAGAGATCCACCCCCCCTCCGCGTTCTGCACAAAACCCAGTGGCCTTCACGCCACACACGCTCGAACAGAACGTGGCCGTACCGAGGCTGGCCACGCCCACCGCCATCCGTGCCCCCACAATGCCCTACACTCATCCAACATACACATTACCGTACTCTGTCCCTACAGCCCAGGTGAGCGTCCCGGTTAGTCTCGCAGCAGCAATGGGAGCGTCACAAGGGGCAGGGCCAGTGGCCGCAGTACGAAACCCCGCCTCCCAGGTGCTTCCGTCAAACCCACAACCTGCAGGCAAGCTGGATAAGCTGCTGGAGATACTGGGCACGCAGTTCCCACAATGCACGAGAACTCAAATAATGGCTGTGCTGCAGCAGGTTAAGAGTGAGCGTGGCACTATGGCTGGCATGTCTGTAGAGGACATCAAACAGCAAGTGGAACAGAGACTCGCACAAAATGAACGCCCGCCTCCAGGCCCCATAGCGCCCCCTGCAGGCTCCAGACACTCACACAGAGGTCCTGTCCAGCCCGCGCTGTCCCCCCGTCCCTCTCTCCATGCTCCCAGCGCTCACGTCTTCCAGTCCCGAGTCCCACAGGCAGCTCCATCTGTGCGTaagctgtgtttaatgtgtcaGAACCATGTAGAACCCGGAACCCAATACCAAACAAACTGCCCTCATACGCTACACAAAGAGtgCATCAGTGTGTGGCTGCAGTCCAGCAAGAACAACTCCTGTCCCTTCTGTCCCAGCAAATAAACCCATGAGGCTCTTTCTTTCACGTCACATGACCATGTGTCGTTGCTGATTTAACACATCGTGCGCACAAGATCAGGTGATTTACAGATACAGTTCATCATCGACACTGAGACctgctgggattttttttttttcctttcgtTCCTTTTGTTATATTCTTTGATTTGTgattaatatttttagaaatatttttttacatgaatcCAAACAGGGGGAAAATATGTTATATGTTTATCTCTCTTCCTACAGAGAGATAAACATTGTAGAGCTCTCTGTAAttaaattatgtatattttctaataaatgataattaatA
>XM_034300752.1
TTTGGTTCAGTCCATATCCGTCGGAAGGTGGAGTGGACATACCGGAAGTGGAGCTGGATAACTCTGGGGTACTGAATACAATGCCAATCAATGGAGAGACCAGAGAGCAGGATGTTCAGTACTCTTCAGGGACCAGGTGACTGATAACTGATGTGGTGTGTCTTACGCGTGCCGTTCTCTCCAACACAGACTGATGACTGGACGCAAGAAAAAAGTGTCAACACAAATGAAAGCTGGGAACACTTAATGagcGTCCTGGTGGAACAGAGTGCCGAGCTGGCGGAGGAGTGCGAGTCTCTGGAGAAACAGCAGGCTACTGAAGAGAGCGAGTGCAAGAGCCAAATCGAACGTTTGGAGAAGATGAGAGACGACAAGCAGCGGCAACATCGGGCTCTCCTAGATAAGATCGAGTCAGTGCAGGTGAAACTGGATCTAAACAGCAGCAAGACCACGCGGAAAAACTTCACCGCCAAAGTCGAGGAGCTCACCGCCGAGAGGGATCAAAAGCTGGAGGTGAAGAGAAGattgaCCCAAGAGTTGGAGGACATTGATGGGAGACTGAAGTTGCATAAGGAagagcaaagaaatgaaaaGCTTTCTTGGGAACAGGAGATTGCTGCTTTGCAGCATGAGATGGAGAGACTCTCTAGACAAGTTGAAGAATCCAATCAGGCAGCTCTGAAGGATGAGatcgcTGCTCTAGAGTCTCAGAAAGAGCTGGCAATTTCTCAGCTAGAAGACTGGATTGCAGAAGCTGAAAGATATCTAAACACTGTCAGGTCAGACACTTCACCTCAGAGCAGCCGGCATCGACTTGAATGGGAGAAAAATGTGGTGATGGTTCGTAACAGCTTGGGAAAACTACAGTCATTATATAATGAAAACCTTAAGCAGCTTCACAAAGGGCAGCAGCTGGACAGTTTGCCTAAAATCCCCCTGCCTCATCTCCCTCACATACCCATGatcGATTTGCTGAATTTCACATCGTATGCTGCGATCCGCCCCCCAGTGACCCAGCCTCAGTTTCACTCAGCCCAGAGATCCACCCCCCCTCCGCGTTCTGCACAAAACCCAGTGGCCTTCACGCCACACACGCTCGAACAGAACGTGGCCGTACCGAGGCTGGCCACGCCCACCGCCATCCGTGCCCCCACAATGCCCTACACTCATCCAACATACACATTACCGTACTCTGTCCCTACAGCCCAGGTGAGCGTCCCGGTTAGTCTCGCAGCAGCAATGGGAGCGTCACAAGGGGCAGGGCCAGTGGCCGCAGTACGAAACCCCGCCTCCCAGGTGCTTCCGTCAAACCCACAACCTGCAGGCAAGCTGGATAAGCTGCTGGAGATACTGGGCACGCAGTTCCCACAATGCACGAGAACTCAAATAATGGCTGTGCTGCAGCAGGTTAAGAGTGAGCGTGGCACTATGGCTGGCATGTCTGTAGAGGACATCAAACAGCAAGTGGAACAGAGACTCGCACAAAATGAACGCCCGCCTCCAGGCCCCATAGCGCCCCCTGCAGGCTCCAGACACTCACACAGAGGTCCTGTCCAGCCCGCGCTGTCCCCCCGTCCCTCTCTCCATGCTCCCAGCGCTCACGTCTTCCAGTCCCGAGTCCCACAGGCAGCTCCATCTGTGCGTaagctgtgtttaatgtgtcaGAACCATGTAGAACCCGGAACCCAATACCAAACAAACTGCCCTCATACGCTACACAAAGAGtgCATCAGTGTGTGGCTGCAGTCCAGCAAGAACAACTCCTGTCCCTTCTGTCCCAGCAAATAAACCCATGAGGCTCTTTCTTTCACGTCACATGACCATGTGTCGTTGCTGATTTAACACATCGTGCGCACAAGATCAGGTGATTTACAGATACAGTTCATCATCGACACTGAGACctgctgggattttttttttttcctttcgtTCCTTTTGTTATATTCTTTGATTTGTgattaatatttttagaaatatttttttacatgaatcCAAACAGGGGGAAAATATGTTATATGTTTATCTCTCTTCCTACAGAGAGATAAACATTGTAGAGCTCTCTGTAAttaaattatgtatattttctaataaatgataattaatA

Function

symbol description
rnf214 Predicted to enable ubiquitin-protein transferase activity. Orthologous to human RNF214 (ring finger protein 214).

NR:

description
RING finger protein 214-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300750.1 True 2313 mRNA 0.48 15 16832882 16839376
XM_034300751.1 False 2153 mRNA 0.49 15 16832882 16839380
XM_034300752.1 False 2104 mRNA 0.50 14 16832882 16839013

Neighbor

gene id symbol gene type direction distance location
mpzl2b LOC108259864 coding downstream 14637 16808492 ~ 16818245 (-)
scn4bb LOC108259866,LOC108437026 coding downstream 29489 16789154 ~ 16803393 (-)
tmprss13b LOC108259860 coding downstream 52827 16769766 ~ 16780055 (-)
arhgap35b arhgap35,LOC108260288,LOC108437035,LOC107596120,LOC107734134,LOC107663410 coding downstream 76746 16744036 ~ 16756136 (-)
LOC113531483 NA coding downstream 91790 16712149 ~ 16741092 (-)
tagln2 tagln,tagl,LOC107700246,LOC107548469,LOC107746372,LOC107710578,LOC107596134 coding upstream 14084 16853464 ~ 16861200 (-)
tppp2 LOC108259867,LOC108437044,LOC107548470,LOC107700244,LOC107746373,LOC107693436 coding upstream 28073 16867453 ~ 16872014 (-)
nfkbib nfkbib coding upstream 43768 16883148 ~ 16890513 (-)
gjd1a gjd1a,LOC108259863,LOC103027887,LOC107700241,LOC107548473,LOC108437049,LOC107746368,LOC107596136 coding upstream 69181 16908561 ~ 16927179 (-)
LOC113531238 NA coding upstream 112001 16951381 ~ 16955173 (-)
G388359 NA non-coding downstream 134103 16646975 ~ 16698779 (-)
LOC117596255 NA non-coding downstream 143837 16687035 ~ 16689045 (-)
G388134 NA non-coding downstream 397503 16429227 ~ 16435379 (-)
G388091 NA non-coding downstream 495758 16334604 ~ 16337124 (-)
G388082 NA non-coding downstream 525756 16306509 ~ 16307126 (-)
G388400 NA non-coding upstream 4613 16843993 ~ 16850404 (-)
G388406 NA non-coding upstream 106533 16945913 ~ 16951051 (-)
G388405 NA non-coding upstream 109595 16948975 ~ 16950536 (-)
G388440 NA non-coding upstream 139069 16978449 ~ 16989015 (-)
G388692 NA non-coding upstream 363406 17202786 ~ 17202992 (-)
fxyd2 NA other downstream 69406 16758240 ~ 16763476 (-)
LOC113531235 NA other downstream 452095 16363494 ~ 16380787 (-)
gltpd2 LOC108260402 other downstream 944823 15882338 ~ 15888059 (-)
nrgna NA other downstream 1806013 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 1909492 14916662 ~ 14923390 (-)
crx crx other upstream 126586 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 450964 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 696047 17535427 ~ 17544583 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 828988 17668368 ~ 17727825 (-)
G389092 NA other upstream 1035535 17874915 ~ 18277958 (-)

Expression


Co-expression Network