arhgap35b (arhgap35,LOC108260288,LOC108437035,LOC107596120,LOC107734134,LOC107663410)


Basic Information

Item Value
gene id arhgap35b
gene name arhgap35,LOC108260288,LOC108437035,LOC107596120,LOC107734134,LOC107663410
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16744036 ~ 16756136 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921699.2
GGGAGCTGATCCGGGCGGAGGGGCCGCCATTACCGGGGAAGCAAGAGAAGcccactttcacacacacacactcacacacacaccctgtgctCCTACACGCTAGCACACATTTCGGTGTGGTTTGGGAATTCGGTGGTTATTTATTCCACAGCTATGAAGCGTTAGAGCGGGATTTACCGGAATGTCAGCGCCGCGCGTGCTCGCCGCATAGGATGAAATGAGCGCATATTTattacaactacaacaacaaagGACATCATGATTGATCAGGAGAAGCGTGGGACAGCCGGAGGAAGCCAATGAGGCGAGGATTGTGTGCCCTGGCGGAGAATAGCGCTACATATCCAGCTGTAATCACTTCCTCCGTCCGACGTCGCCGTTCATGGCTGCTGGGAAGCCGCGGTTCTCGAAACCGAGCCTGAGCCCCAGGAGCCGGGTCAAACCCAACACGAAATACTGCTTTTTTAACCCCGAGGAGCTGCTTGTCCGTGTTATATCCCCTCAGAATCAGTTTAAATCTTTAATCTGTGCTATACACATGTTTTTTGGGGCATTGTTCATGgtttaaagtgtataaaagctACAGAAGCggctgaaataaataaagcctcACGCCGCCGGCCTGGACTCGGACGAGCCACGGATAGAACCAAATGATGgaTGGACATCAGTAAAGAACAACTCTGAAACATTTGATATTTACTGTCGAGCCACTCCCACCCGATTGTCACTTTTGTTTCTGTACCCTACATTCTATAATATGGGCAAGAAGCACACAATCTAAATTAGTCTGATGTAAAGCCAGAGAAAACACTGCAGCAGATATGATTGAATAAATCTATTTATAAACACGTCGAAGAGTGAAGCCTGTGTTAACCCTTACGGCATGGCAAGATGAGTGCCTGCAAACGATGATGGCTAAAAAGCAAGATTCCCGGGTGCCTACCTACAACCTAGTTGTAGTTGGTCTGTCAGGCACTGAGAAAGAGAAGGGCCCATGCGGAGTTGGCAAGTCTTGCCTTTGTAATCGCTTTGTCCGCCCTAGTGCAGATGACTTTCACCTTGATCACACATCTGTGTTGAGTACCAGTGATTTTGGTGGCCGAGTTGTCAACAATGACCATTTCCTGTTCTGGGGAGAGGTGGAGCGAGTCTTGGAGGATGGCACTGAGTGTAGGATGCATGTGGTGGAGCAGACCGAGTTTATTGATGACCAGACCTTTCAGCCACATCGTAGCACAGCTTTACAGCCTTACATCAAAAGAGCTGCCTCCACAAAACTGGCCTCTGCAGAAAAACTCATGTACTTTTGTACAGACCAGTTGGGCCTGGAACAGGACTTTGAGCAAAAACAGATGCCTGAGGGAAAGCTGCAGGTAGACGGATTTCTACTCTGTGTTGATGTAAGTCGAGGGATGAACCGCAGCTTTGATGATCAAATGAAGTTTGTTACCAACCTGTATAATCATCTAGGTAAAACTAAAAAGCCTGTTGTGCTGGTTCTCACTAAGTGCGATGAAGGAGTTGAGCGATACATCAAGGACTCTCATACATTTGCCATCAACAAAAAGAACTTGCAAGTTGTTGAGACATCAGCTCGATCTAATGTCAATGTGGACTTAGCTTTCCTTACTCTGATTCAACTCATTGATAAGGGAAGGGGCAAGCATAAGATAATACCTTACTTTGAGGCTTTAAAACATCAGAGTCAAATAATTGCCACTGCAAAGGACCGATATGAATGGTTAGTGAACCACATAGTGAAGAATCACAACGAGACCTGGCCTGCTATCAGCCGACGTATGCAGCCATCACAAGAATACAAGGAATATGTCTTTTTAGAAGGTACAGCTAAAGCAAAAAAGCTTTTTCAACAGCATGTTCATAGGCTTAAACAGGAGCACATTGAGAGACGTCGTAAAGCATATTTAAGTGCTCTCCCACTGGCCTTGGGTTCCTTAGTGTCTGAATTGGCTGAAATTGAGCATTTAAGCTGGTCTGGGGTACAGAAGGTACTGGAGTCCAAAAAGGACTTTGACCATTGGTTTGTGGTTCTGGAGGATGCACCATGGGAGGACACGCCACATCTTGACAATATGGAAGATGAGCGCATACCCTTTGACGTGCTGGATACGACTGCCGCAGAGATCATATTTGATGCACATCTTGAACATTTGCGAAATGAGTGCAAGCGTGCCGAGATGCGACATGAATTTAAGATGAAGCTGGCATCCTCACCCTTTGTCACCCCTGGCAAGCCTTGGGAAGAGGCACGGAGCTTCATAATGAATGAAGACTTCTATCAGTGGTTGGAGGAGCCAGAATACTTGGATATCTACAATAGGCACCAAAAGGTGATCATAGACAGGGCAAAGGAGGATTTCCAGGAACTTCTGCTGGAGTACTCTGAGCTTTTTTATGAACTTGAAGTGGATGCTAAACCAAGTAAAGAAAAGATGGGGGCAATTCAGGAAGCACTGGGAGAAGAGCAGCGCTTCAAGGCATTACAGAAACTGCAGGCAGAAAGAGATGCCTTAGTATTAAAGCACATCCATTTTGTTTATCACCCAACCAAGGATACTTGCCCGAGCTGCCCATACTGTATTGACAACAAGATTGAGCAAATATTAGCCTTGTGCTTCCCTATGCGCTATCCTTCCTTTGGAAAGTCTCATATGCTTGAAAGCAAAGCAGAAAGGATTAACTTAGTGATTCTGGGCAAAGATGGTTTAGCAAGAGAGTTGGCTAACGAGATTCGGGCTATGTGTGCCAACGATGACTACTATGTGCTTGAAGGCAGAATATATGAGCTAATACTCAGGCCTATTGAGGGTAATGTTAGGCTTCCTGTTAACTCCTTCCATACAGCTACATTCACACCTCATGGCTGCCTGTGTTTGTACAATTCCAAGGAATCTTTGTCTTATGTTCTAGAAAGTATTGAGAAGTTGCGTGAGTCCACACTTGGCAGAAGGGATAACCACATAGCTCAGCTTCCTTTGTCTCTCTTGTTAGTCACTAAGAGAGGTGTTGGAGCTTTGAGTGACCTTGGTGGGGAGACAGCCCAAATCTTAATCACACAGGGTCAGCAGGTAGCTATGAAACTGCAATGTGAATTTTTGGAGCCAGCATCCCCTGGCTCAGGCTATGGGCGGAATGTGAATGAGAAACAGATAAACCAAGTATTAAAGGGTTTGTTAGACACAAGAAGGAATGCTGCATTTCGCAGTGGTTCCCCATCTTCACCCCCTTTGCCCCCGAGTATCAGAGACATGCAGCAGGACCAGAATCCAGAGGCAGACTTACGTATTGTCATGTGTCTAATGTGTGGAGATTCCTATGACGTAGACCAACTTCTCTCGCCCTTCTTACTGCCTCAGCATTGCAGGCCAACCAGTTCCAGTGGTAATTCAGTGGTGCTTGAGCAGACAGTCGGTGACAACAGGCTAACAATAGAGCTGTCCCTACTGTCATATCATGCTTCTTTTACCATGCGCAAGAGTCGGCTGGTACATGGGTACATAGGTGTTTACTCTGCTCGCCGCAAAGCCTCGTTGGAAACCTTGTGTGCCTTACTCTGTGAGGTTCCAGACATTGTTCCAGTCCAGCTGCTAGCTGtgggagaaacagagacagagcttACAGACTCAGAGTCTGCACGAGAGTTGTTGGTGCAGGGCGAAGAACTGGCCCATGAAATTGAGGGTCGTTTTGCTAGTGTGGTCTGTGGACCAGGTGGAGTTGTGGGAGGCCTGCACAGAATAGACCTTTTACAACCTTTCTTCATGGAGGTAGCAGAGAAGAAGACTCTTGTTGAGGCAACTCATGTATACGATAATGCTGCAGAGGCCTGTAGCACAAATGAGAATGTGTATTCACCCCATTGCGGTTCCCCTAGCCCTGTAACTATGCTGTTAGATTATGAGGAAGAGATGGAAGCTTCACCGCCTTACTTTGATGGCACCCTCACCTCTCATAGCGGATTCAAGCTCCCTGACTTGGACTCGGGTGACACATTCTCTGTCATCTCTGAACTCAGTACTTTTGAGAACAAGTTGAACAGCAAAGTCCCTTTACATATGAGGCCCAAACCTAGTGTCACTTTTGACTTCAGAAAGCACAACTTTAATCCCTACATGGACTCTAGCCATCGGCGGTCTCTTACCTCCAATGTCACCTGGCCTCCCTGTGGGGACGGGGTGTATGATCCATCTGACTATGCTGAGCCAATGGATGCTGTTTCCAAGCCTCGACCCAGCCATGAGGAGAACATATACTCAGTGCCACATGACAGCACACAGGGTAAGATCATCACCATAAGGAACTCCAACAGAATGCACTCTAACGGAGGTGTGAATGGCTCGGATAGTGAAGGGGATGGCAGCTCTTTGGAGCGGCGCAGGAAGTTCTCTTCTGCAGGAGTAAAACCACGATTGTACCGAGATCGATCCAAGCGCCTAGGCAAGTTCAGCAGCTTCCGTACCAGTTTCTCCATTGGCAGTGATGATGAGTTTGGTGGTCTTCCGAAAACAAAGGAGGATGATGTGACAGTTTTGAAAGGAGAATCGCTGATTGAGGAAGGGGATGATAAGAAAAGGAACATTCTGAGGAGCCTTCGTCGACCAGGCAAAAAAACCAGGCTAAAGCCTCGACACTCGATCTCCAAACCTCTGGAGAGTACTTACTTTGGGGTGCCATTAGTTAATGTTGTGTCACCTGACAAACCCATCCCAGTGTTCATCGACAAATGTATCCGCTTCATTGAGGCCACAGgctTGACTACGGAGGGTATATATAGAGTGAGTGGAAACAAGTCAGAGATGGAGAGCATGCAGCGACAGTTTGAGCAGGACCATGGCCTGGACTTGGTAGAGAAGGACTTTCCGGTGAACACAGTAGCTGGAGCATTAAAGAGCTTTTTCTCTGAGCTGCCTGATCCACTGGTCCCATACAGTCTACAAGTGGAGCTGGTGGAAGCTTTCAAGATAAATGACCGAGAGCAGAGACTGCAGACCATGAAGGATGTGCTGAGGAGATTTCCTCGTGAGAATTATGAAGTTTTCAAACATGTCATGGGCCACCTGAACAAGGTTAGCCAGTGGAACAGAGTCAATCTGATGACCAGCGAGAACCTGTCCATCTGCTTCTGGCCCACGCTCATGCGACCTGACTTCACCACCATGGACGCTCTCACGGCCACACGCACCTACCAGACCATCATCGAGACGTTCATCCATCAGTGCGCCTTTTTCTTCTACAACCAAGCTCCCGCTGAATCTCCCACAGGCCTCTACGGCACTGCTGTGCCCTCTGCCCTGCCCCCTTCGCCCAGCGCCGCGCCTTTGTGCACCCCTCCACCTCCGCACTTCAGCCCGGCTCTGCATTCGCCCCCCAGCTCGCCCCCTCAGAGCCCCCTCACCGTCCccgcagagacacacacactgtgagacagggaaacacacacagctaaagaTTGCTCGTATTTACTCACACGTACCGTATATGCTGCAGTCTTTACATAGACACTTCATATGTAAACACGATTACACACAAGATGTGTGCATATTTAAATTTGCATGTAGCGACTGGATTCAACGCTGTCTGAGAGTTTGTGAATGATTTCCGTTTTGCACACACTTGAAACTGTAGCGTGCTGATGAcgcacacggacacacacagtgctcctTTCTCGGTGTGGACATTCGTCACTGTTAAGGGGGACCAGAACTTCTTAATCCAAGTCCACGTTCTGCAGTTTAGCAGACTTCTAAGTGTGCAGTTTTCCTGTTCTTGTTGTGTctctccatttaaaaaaaaaaaataattctctcACTCTATCGCTTAACTCCATCCATTCCTGCTTTCCTGATCTCAGACTGTAGCTGCTTTTTTCAGCCACACATGAAGGAAATACAGTAGGGAGACGCACTACAAACGGAAATCCATCCAAGCACTTATTCGAACGCTCTTTGATGAAGTTAAACAGACACTTTGAGAGAgtgctgattttaaaaaaaagagagagagataaatagaATTACTATTGCTGCATGCTTATTTGCAAAGACAAACTTTTTTCCAGTGTTGATTTAATCTCCCTGATCCCTTGTTAAAAGACAGCATggatttgagaaaaaaaaaaaaaaacattgaagaTGTCATGAaagttttgattttgttttcttctctctgtgaTATGAAGCTTTGACGGTTTTGCTTTTATTGGTTCCTGTGGATCTGTGCTCTTTTTATGAGATTTGATTGGATGAATCTGGAACTCCAGAGGGTTTGACCGCTCCGAGACATTTAATGACTTTGAACTTTGATATTTAACCTCTAAACCTTTAACCTTTTAGTCAAGGGTGAACCCAGAAGCCTCCCACCCTAAAAAAATGggacgttaaaaaaaaaaagacacacacacatatacacacacatacacacacgggCCTTCTTTGGACGTCCTCTGTTTTTGTCACTTACTAATATAagcactttgattttttttttttttttgatgttttatttaggCCTGATTTTGTGAAGCGTAACACTGAATTGCATTTGGCTTAGCCTGTGTCGGGGGAAGTTTATTATCCTCATGAAGCATCTGTTCATCTCTGTACTGGATTTTCCTTGTATGTCTGTGACATTAAGACTAAACTGCAACTAATGTA

Function

symbol description
arhgap35 Enables GTPase activator activity and phospholipid binding activity. Predicted to be involved in several processes, including axon development; establishment or maintenance of actin cytoskeleton polarity; and regulation of plasma membrane bounded cell projection organization. Predicted to act upstream of or within several processes, including negative regulation of Rho protein signal transduction; negative regulation of vascular permeability; and nervous system development. Predicted to be located in ciliary basal body and cytoplasm.

NR:

description
PREDICTED: rho GTPase-activating protein 35-like

GO: NA

KEGG:

id description
K05732 ARHGAP35, GRLF1; glucocorticoid receptor DNA-binding factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921699.2 True 6677 mRNA 0.46 7 16744036 16756136

Neighbor

gene id symbol gene type direction distance location
LOC113531483 NA coding downstream 2944 16712149 ~ 16741092 (-)
LOC113531479 NA coding downstream 40768 16694308 ~ 16703268 (-)
LOC113531175 NA coding downstream 75788 16658651 ~ 16668248 (-)
LOC113531477 NA coding downstream 112672 16625953 ~ 16631364 (-)
chrm1b LOC108259847 coding downstream 163503 16575778 ~ 16580533 (-)
tmprss13b LOC108259860 coding upstream 13630 16769766 ~ 16780055 (-)
scn4bb LOC108259866,LOC108437026 coding upstream 33018 16789154 ~ 16803393 (-)
mpzl2b LOC108259864 coding upstream 52356 16808492 ~ 16818245 (-)
rnf214 rnf214 coding upstream 76746 16832882 ~ 16839380 (-)
tagln2 tagln,tagl,LOC107700246,LOC107548469,LOC107746372,LOC107710578,LOC107596134 coding upstream 97328 16853464 ~ 16861200 (-)
G388359 NA non-coding downstream 45257 16646975 ~ 16698779 (-)
LOC117596255 NA non-coding downstream 54991 16687035 ~ 16689045 (-)
G388134 NA non-coding downstream 308657 16429227 ~ 16435379 (-)
G388091 NA non-coding downstream 406912 16334604 ~ 16337124 (-)
G388082 NA non-coding downstream 436910 16306509 ~ 16307126 (-)
G388408 apoa4 non-coding upstream 73612 16829748 ~ 16838048 (-)
G388400 NA non-coding upstream 87857 16843993 ~ 16850404 (-)
G388406 NA non-coding upstream 189777 16945913 ~ 16951051 (-)
G388405 NA non-coding upstream 192839 16948975 ~ 16950536 (-)
G388440 NA non-coding upstream 222313 16978449 ~ 16989015 (-)
LOC113531235 NA other downstream 363249 16363494 ~ 16380787 (-)
gltpd2 LOC108260402 other downstream 855977 15882338 ~ 15888059 (-)
nrgna NA other downstream 1717167 15018893 ~ 15026869 (-)
ccdc84 ccdc84 other downstream 1820646 14916662 ~ 14923390 (-)
selenow1 LOC103044489 other downstream 3063511 13616122 ~ 13680525 (-)
fxyd2 NA other upstream 2104 16758240 ~ 16763476 (-)
crx crx other upstream 209830 16965966 ~ 16970026 (-)
G388705 nono,LOC103047741,LOC107672625,LOC107741185,LOC107756548 other upstream 534208 17290344 ~ 17328020 (-)
LOC113524239 NA other upstream 779291 17535427 ~ 17544583 (-)
LOC117596207 LOC108262004,LOC108262359,LOC108260034,LOC108260038 other upstream 912232 17668368 ~ 17727825 (-)

Expression


Co-expression Network